CmaCh20G008170 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G008170
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	B-box zinc finger family protein
Location	Cma_Chr20 : 3862961 .. 3863605 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATCCACTGTGATGTTTGCAACAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCCGCCCTCTGCTCTGCCTGCGACCACCACGTCCACCGAGCCAACAAGCTCGCCGAGAAACACAGCCGATTCACACTCTTCCGATCCACTCCCACCGCCAATTCACCGCCGTCGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTATTCTATCTTGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACGGCGCAAGCGAACACACCCAGAAACACAGCCGGTTTCTTCTCACTGGTGTGAAGGTTTCACCGTCGCCGGCGACTTCCTCTTCCTCCTCCTCTATCTCCGGCGGCGGCGATGAAAGCGAGGAGGTCACAATTGAAGCTGAAATTGGGATCTTTAAGGCGAGATCGAGGAAGGAGGCGAAAATGGGGTCAAAAGGGTTGCTTCGAGGTCCTCTAATGGAGGATTTGCAGGCACCGATTGTGGGGAATTTTGGTGGGATGAGTGAAAATGGGGTTTCGTTTTCGACAAGTAACATATCGGAGTATTTGGAGAGCTTGCCGGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCGTGTGTTGCTGATGTTTTCTGTAAAGTTTGA

mRNA sequence

ATGAAGATCCACTGTGATGTTTGCAACAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCCGCCCTCTGCTCTGCCTGCGACCACCACGTCCACCGAGCCAACAAGCTCGCCGAGAAACACAGCCGATTCACACTCTTCCGATCCACTCCCACCGCCAATTCACCGCCGTCGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTATTCTATCTTGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACGGCGCAAGCGAACACACCCAGAAACACAGCCGGTTTCTTCTCACTGGTGTGAAGGTTTCACCGTCGCCGGCGACTTCCTCTTCCTCCTCCTCTATCTCCGGCGGCGGCGATGAAAGCGAGGAGGTCACAATTGAAGCTGAAATTGGGATCTTTAAGGCGAGATCGAGGAAGGAGGCGAAAATGGGGTCAAAAGGGTTGCTTCGAGGTCCTCTAATGGAGGATTTGCAGGCACCGATTGTGGGGAATTTTGGTGGGATGAGTGAAAATGGGGTTTCGTTTTCGACAAGTAACATATCGGAGTATTTGGAGAGCTTGCCGGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCGTGTGTTGCTGATGTTTTCTGTAAAGTTTGA

Coding sequence (CDS)

ATGAAGATCCACTGTGATGTTTGCAACAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCCGCCCTCTGCTCTGCCTGCGACCACCACGTCCACCGAGCCAACAAGCTCGCCGAGAAACACAGCCGATTCACACTCTTCCGATCCACTCCCACCGCCAATTCACCGCCGTCGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTATTCTATCTTGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACGGCGCAAGCGAACACACCCAGAAACACAGCCGGTTTCTTCTCACTGGTGTGAAGGTTTCACCGTCGCCGGCGACTTCCTCTTCCTCCTCCTCTATCTCCGGCGGCGGCGATGAAAGCGAGGAGGTCACAATTGAAGCTGAAATTGGGATCTTTAAGGCGAGATCGAGGAAGGAGGCGAAAATGGGGTCAAAAGGGTTGCTTCGAGGTCCTCTAATGGAGGATTTGCAGGCACCGATTGTGGGGAATTTTGGTGGGATGAGTGAAAATGGGGTTTCGTTTTCGACAAGTAACATATCGGAGTATTTGGAGAGCTTGCCGGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCGTGTGTTGCTGATGTTTTCTGTAAAGTTTGA

Protein sequence

MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSCDICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSSISGGGDESEEVTIEAEIGIFKARSRKEAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGVSFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV

Homology

[Close]

BLAST of CmaCh20G008170 vs. Swiss-Prot
Match: BBX20_ARATH (B-box zinc finger protein 20 OS=Arabidopsis thaliana GN=BBX20 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.3e-44
Identity = 107/215 (49.77%), Postives = 141/215 (65.58%), Query Frame = 1


Query: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSC 60
           MKI C VC+KEEASVFC +DEAALC+ CD HVH ANKLA KH RF+L  ++PT    P C
Sbjct: 1   MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSL--TSPTFKDAPLC 60

Query: 61  DICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPA----TSSS 120
           DIC  RRA LF  EDRAILCRECDIPIH A+EHT+KH+RFLLTGVK+S SP+     S+S
Sbjct: 61  DICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRASNS 120

Query: 121 SSSISGGGDESEEVTIEAEIGIFKARSRKEAKMGSKGLLRGPLMEDLQAPIVGNFGGMSE 180
           +S+ + G  ++   ++ +E+    + +  E    S           ++     N+  +S+
Sbjct: 121 NSAAAFGRAKTRPKSVSSEV---PSSASNEVFTSSSSTTTSNCYYGIEE----NYHHVSD 180

Query: 181 NGV-SFSTSNISEYL-ESLPGWCVEEFLD-SSCVA 209
           +G  S  T +ISEYL E+LPGW VE+ L+  SCV+
Sbjct: 181 SGSGSGCTGSISEYLMETLPGWRVEDLLEHPSCVS 206

[Close]

BLAST of CmaCh20G008170 vs. Swiss-Prot
Match: BBX21_ARATH (B-box zinc finger protein 21 OS=Arabidopsis thaliana GN=BBX21 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.3e-44
Identity = 99/218 (45.41%), Postives = 132/218 (60.55%), Query Frame = 1


Query: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSC 60
           MKI CDVC+KEEASVFC +DEA+LC  CDH VH ANKLA KH RF+L   + +  S P C
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query: 61  DICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSSI 120
           DICQ ++A LF  +DRAILC++CD  IH A+EHT+KH RFLLTGVK+S + +    +S  
Sbjct: 61  DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKS 120

Query: 121 SGGGDESEEVTIEAEIGIFKARSRKEAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGVS 180
           S     +++ ++              + + +   L+ PL    Q+  +  F  ++    S
Sbjct: 121 SSSSSSNQDFSVPG------------SSISNPPPLKKPLSAPPQSNKIQPFSKINGGDAS 180

Query: 181 F----STSNISEYL-ESLPGWCVEEFLDSSCVADVFCK 214
                STS ISEYL ++LPGW VE+FLDSS     F K
Sbjct: 181 VNQWGSTSTISEYLMDTLPGWHVEDFLDSSLPTYGFSK 206

[Close]

BLAST of CmaCh20G008170 vs. Swiss-Prot
Match: BBX22_ARATH (B-box zinc finger protein 22 OS=Arabidopsis thaliana GN=BBX22 PE=1 SV=2)

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-28
Identity = 65/124 (52.42%), Postives = 79/124 (63.71%), Query Frame = 1


Query: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSC 60
           MKI C+VC   EA+V C +DEAALC ACD  +H ANKLA KH R  L  S   A+S P C
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSAS---ASSIPKC 60

Query: 61  DICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKV-----SPSPATSS 120
           DICQ    F F L+DRA+LCR+CD+ IH  + H   H RFLLTG+KV        P+T S
Sbjct: 61  DICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTGPSTKS 120

[Close]

BLAST of CmaCh20G008170 vs. Swiss-Prot
Match: BBX23_ARATH (B-box zinc finger protein 23 OS=Arabidopsis thaliana GN=BBX23 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.8e-28
Identity = 70/156 (44.87%), Postives = 91/156 (58.33%), Query Frame = 1


Query: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFR---STPTANSP 60
           MKI C+VC K EA V C SDEA LC  CD  VH ANKL ++H R  L +   S  TA+  
Sbjct: 1   MKIQCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQKDAASATTASGA 60

Query: 61  PSCDICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSS 120
           P CDICQ R+ + F LEDRA+LC +CD  IH  +     H RFLL+GV+VS    T +S 
Sbjct: 61  PLCDICQERKGYFFCLEDRAMLCNDCDEAIHTCN----SHQRFLLSGVQVSDQSLTENSE 120

Query: 121 SSISGGGDESEEVTIEAEIGIFKARSRKEAKMGSKG 154
            S S     SE   I++++ +    S +E + G+ G
Sbjct: 121 CSTS---FSSETYQIQSKVSLNSQYSSEETEAGNSG 149

[Close]

BLAST of CmaCh20G008170 vs. Swiss-Prot
Match: BBX24_ARATH (B-box zinc finger protein 24 OS=Arabidopsis thaliana GN=BBX24 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.4e-27
Identity = 58/108 (53.70%), Postives = 71/108 (65.74%), Query Frame = 1


Query: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSC 60
           MKI CDVC K  A+V C +DEAALC  CD  +H ANKLA KH R  L      +   P C
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHL---NSLSTKFPRC 60

Query: 61  DICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVS 109
           DICQ + AF+F +EDRA+LCR+CD  IH A+  +  H RFL TG+KV+
Sbjct: 61  DICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVA 105

[Close]

BLAST of CmaCh20G008170 vs. TrEMBL
Match: A0A0A0LIV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G250430 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.0e-58
Identity = 131/217 (60.37%), Postives = 148/217 (68.20%), Query Frame = 1


Query: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTAN----S 60
           MKI CDVC+KEEASVFCPSDEAALC+ CD  +HRANKLA +H+RF+L  S+ +A+    S
Sbjct: 1   MKIRCDVCDKEEASVFCPSDEAALCAPCDRQIHRANKLASQHNRFSLLHSSASASAAATS 60

Query: 61  PPSCDICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSS 120
            P CDICQ+RRAFLF  EDRAILCRECDIPIH  SEHTQKHSRFLLTGVKVSPSPATSSS
Sbjct: 61  EPLCDICQIRRAFLFCREDRAILCRECDIPIHDTSEHTQKHSRFLLTGVKVSPSPATSSS 120

Query: 121 -SSSISGGGDESEEVTIEAEIGIFKARSRKEAKMG-SKGLLRGPLMEDLQAPIVGNFGGM 180
            SSS++  G+E+E        G  K  SRK +KMG SKGL+                   
Sbjct: 121 CSSSVASSGEENE--------GSLKKCSRKRSKMGFSKGLV------------------- 179

Query: 181 SENGVSFSTSNISEYLESLPGWCVEEFLDSSCVADVF 212
                      ISEYLESLPGWCVEEFLDSS    +F
Sbjct: 181 -----------ISEYLESLPGWCVEEFLDSSSSPHLF 179

[Close]

BLAST of CmaCh20G008170 vs. TrEMBL
Match: A0A0D2UQI6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G197000 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.0e-50
Identity = 116/221 (52.49%), Postives = 145/221 (65.61%), Query Frame = 1


Query: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSC 60
           MKI CDVCNKEEASVFC +DEAALC ACDH VH ANKLA KH RF+L   + ++   P C
Sbjct: 1   MKIQCDVCNKEEASVFCTADEAALCDACDHRVHHANKLASKHQRFSLLHPS-SSKQIPLC 60

Query: 61  DICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPA--TSSSSS 120
           DICQ +RAFLF  +DRAILCR+CD+PIH A+EHT+KH+RFLLTGVK+SP+ A  TSSSSS
Sbjct: 61  DICQEKRAFLFCQQDRAILCRDCDVPIHAANEHTKKHNRFLLTGVKLSPTTAIYTSSSSS 120

Query: 121 SISGGGDESEEV-TIEAEIGIFKARSRKEAKMGSKGLLRGPLMEDLQAPIVGNFGGMSEN 180
           S++   +    V   +++  +  + S     + S  L +   +    A +  N  G    
Sbjct: 121 SVASLSNLGHSVPEFKSQQSVKNSVSASTPNLNSTSLAKSSSISTTSAAVTNNKSGGDNL 180

Query: 181 GVSF---STSNISEYL-ESLPGWCVEEFLDSSCVADVFCKV 215
             S    S S+ISEYL E LPGW VE+FLDSS  +  FCKV
Sbjct: 181 LASVEGGSASSISEYLIEMLPGWHVEDFLDSSSPSFGFCKV 220

[Close]

BLAST of CmaCh20G008170 vs. TrEMBL
Match: A0A0B0NAD1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_07959 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.3e-50
Identity = 114/220 (51.82%), Postives = 145/220 (65.91%), Query Frame = 1


Query: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSC 60
           MKI CDVCNKEEASVFC +DEAALC  CDH VH ANKLA KH RF+L   + ++   P C
Sbjct: 1   MKIQCDVCNKEEASVFCTADEAALCDTCDHRVHHANKLASKHQRFSLLHPS-SSRQVPLC 60

Query: 61  DICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPA--TSSSSS 120
           DICQ +RAFLF  +DRAILCR+CD+PIH A+EHT+KH+RFLLTGVK+SP+ A  TSSSSS
Sbjct: 61  DICQEKRAFLFCQQDRAILCRDCDVPIHAANEHTKKHNRFLLTGVKLSPTTAIYTSSSSS 120

Query: 121 SISGGGDESEEV-TIEAEIGIFKARSRKEAKMGSKGLLRGPLMEDLQAPIVGNFGGMSEN 180
           S++   +    V   +++  +  + S   + +    L +   +    A +  N  G  + 
Sbjct: 121 SVASLSNVGHSVPEFKSQQSVKNSVSASTSNLNRTSLAKSSSISTTSAAVTNNKSGGDDL 180

Query: 181 GVSF---STSNISEYL-ESLPGWCVEEFLDSSCVADVFCK 214
             S    STS+ISEYL E LPGW VE+FLDSS  +  FCK
Sbjct: 181 LASVEGGSTSSISEYLIEMLPGWHVEDFLDSSSPSFGFCK 219

[Close]

BLAST of CmaCh20G008170 vs. TrEMBL
Match: B9RHB2_RICCO (Salt-tolerance protein, putative OS=Ricinus communis GN=RCOM_1449200 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 4.4e-50
Identity = 112/215 (52.09%), Postives = 143/215 (66.51%), Query Frame = 1


Query: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSC 60
           MKI CDVC+K EASVFC +DEAALC ACD HVH ANKLA KH RF+L R++  +   P C
Sbjct: 1   MKIKCDVCDKSEASVFCSADEAALCEACDRHVHHANKLASKHHRFSLLRTS--SKQSPLC 60

Query: 61  DICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSSI 120
           DICQ RRAFLF  EDRAILCRECDIPIH A+EHT+KH+RFLLTG+K+S S +   +SSS 
Sbjct: 61  DICQERRAFLFCQEDRAILCRECDIPIHKANEHTKKHNRFLLTGIKLSNSSSLYPTSSS- 120

Query: 121 SGGGDESEEVTIEAEIGIFKAR--SRKEAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENG 180
           S    +S+++T   +  + +    +       S  +L    +E   +P         ++ 
Sbjct: 121 SNSSCDSKKITTSNKKSLQQQPYVNNINTPSFSNEMLSSSSVERASSPSSTAAYNNFDDN 180

Query: 181 VSFSTSNISEYLESLPGWCVEEFLDSSCVADVFCK 214
           VS STS+ISEYLE+LPGW V++FLD +   D FCK
Sbjct: 181 VSISTSSISEYLEALPGWRVDDFLDPAIATDGFCK 212

[Close]

BLAST of CmaCh20G008170 vs. TrEMBL
Match: A0A0D2S4I9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G197000 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 5.7e-50
Identity = 115/220 (52.27%), Postives = 144/220 (65.45%), Query Frame = 1


Query: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSC 60
           MKI CDVCNKEEASVFC +DEAALC ACDH VH ANKLA KH RF+L   + ++   P C
Sbjct: 1   MKIQCDVCNKEEASVFCTADEAALCDACDHRVHHANKLASKHQRFSLLHPS-SSKQIPLC 60

Query: 61  DICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPA--TSSSSS 120
           DICQ +RAFLF  +DRAILCR+CD+PIH A+EHT+KH+RFLLTGVK+SP+ A  TSSSSS
Sbjct: 61  DICQEKRAFLFCQQDRAILCRDCDVPIHAANEHTKKHNRFLLTGVKLSPTTAIYTSSSSS 120

Query: 121 SISGGGDESEEV-TIEAEIGIFKARSRKEAKMGSKGLLRGPLMEDLQAPIVGNFGGMSEN 180
           S++   +    V   +++  +  + S     + S  L +   +    A +  N  G    
Sbjct: 121 SVASLSNLGHSVPEFKSQQSVKNSVSASTPNLNSTSLAKSSSISTTSAAVTNNKSGGDNL 180

Query: 181 GVSF---STSNISEYL-ESLPGWCVEEFLDSSCVADVFCK 214
             S    S S+ISEYL E LPGW VE+FLDSS  +  FCK
Sbjct: 181 LASVEGGSASSISEYLIEMLPGWHVEDFLDSSSPSFGFCK 219

[Close]

BLAST of CmaCh20G008170 vs. TAIR10
Match: AT4G39070.1 (AT4G39070.1 B-box zinc finger family protein)

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-45
Identity = 107/215 (49.77%), Postives = 141/215 (65.58%), Query Frame = 1


Query: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSC 60
           MKI C VC+KEEASVFC +DEAALC+ CD HVH ANKLA KH RF+L  ++PT    P C
Sbjct: 1   MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSL--TSPTFKDAPLC 60

Query: 61  DICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPA----TSSS 120
           DIC  RRA LF  EDRAILCRECDIPIH A+EHT+KH+RFLLTGVK+S SP+     S+S
Sbjct: 61  DICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRASNS 120

Query: 121 SSSISGGGDESEEVTIEAEIGIFKARSRKEAKMGSKGLLRGPLMEDLQAPIVGNFGGMSE 180
           +S+ + G  ++   ++ +E+    + +  E    S           ++     N+  +S+
Sbjct: 121 NSAAAFGRAKTRPKSVSSEV---PSSASNEVFTSSSSTTTSNCYYGIEE----NYHHVSD 180

Query: 181 NGV-SFSTSNISEYL-ESLPGWCVEEFLD-SSCVA 209
           +G  S  T +ISEYL E+LPGW VE+ L+  SCV+
Sbjct: 181 SGSGSGCTGSISEYLMETLPGWRVEDLLEHPSCVS 206

[Close]

BLAST of CmaCh20G008170 vs. TAIR10
Match: AT1G75540.1 (AT1G75540.1 salt tolerance homolog2)

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-45
Identity = 99/218 (45.41%), Postives = 132/218 (60.55%), Query Frame = 1


Query: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSC 60
           MKI CDVC+KEEASVFC +DEA+LC  CDH VH ANKLA KH RF+L   + +  S P C
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query: 61  DICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSSI 120
           DICQ ++A LF  +DRAILC++CD  IH A+EHT+KH RFLLTGVK+S + +    +S  
Sbjct: 61  DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKS 120

Query: 121 SGGGDESEEVTIEAEIGIFKARSRKEAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGVS 180
           S     +++ ++              + + +   L+ PL    Q+  +  F  ++    S
Sbjct: 121 SSSSSSNQDFSVPG------------SSISNPPPLKKPLSAPPQSNKIQPFSKINGGDAS 180

Query: 181 F----STSNISEYL-ESLPGWCVEEFLDSSCVADVFCK 214
                STS ISEYL ++LPGW VE+FLDSS     F K
Sbjct: 181 VNQWGSTSTISEYLMDTLPGWHVEDFLDSSLPTYGFSK 206

[Close]

BLAST of CmaCh20G008170 vs. TAIR10
Match: AT1G78600.2 (AT1G78600.2 light-regulated zinc finger protein 1)

HSP 1 Score: 127.9 bits (320), Expect = 7.6e-30
Identity = 65/124 (52.42%), Postives = 79/124 (63.71%), Query Frame = 1


Query: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSC 60
           MKI C+VC   EA+V C +DEAALC ACD  +H ANKLA KH R  L  S   A+S P C
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSAS---ASSIPKC 60

Query: 61  DICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKV-----SPSPATSS 120
           DICQ    F F L+DRA+LCR+CD+ IH  + H   H RFLLTG+KV        P+T S
Sbjct: 61  DICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTGPSTKS 120

[Close]

BLAST of CmaCh20G008170 vs. TAIR10
Match: AT4G10240.1 (AT4G10240.1 B-box zinc finger family protein)

HSP 1 Score: 125.2 bits (313), Expect = 4.9e-29
Identity = 70/156 (44.87%), Postives = 91/156 (58.33%), Query Frame = 1


Query: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFR---STPTANSP 60
           MKI C+VC K EA V C SDEA LC  CD  VH ANKL ++H R  L +   S  TA+  
Sbjct: 1   MKIQCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQKDAASATTASGA 60

Query: 61  PSCDICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSS 120
           P CDICQ R+ + F LEDRA+LC +CD  IH  +     H RFLL+GV+VS    T +S 
Sbjct: 61  PLCDICQERKGYFFCLEDRAMLCNDCDEAIHTCN----SHQRFLLSGVQVSDQSLTENSE 120

Query: 121 SSISGGGDESEEVTIEAEIGIFKARSRKEAKMGSKG 154
            S S     SE   I++++ +    S +E + G+ G
Sbjct: 121 CSTS---FSSETYQIQSKVSLNSQYSSEETEAGNSG 149

[Close]

BLAST of CmaCh20G008170 vs. TAIR10
Match: AT1G06040.1 (AT1G06040.1 B-box zinc finger family protein)

HSP 1 Score: 122.9 bits (307), Expect = 2.5e-28
Identity = 58/108 (53.70%), Postives = 71/108 (65.74%), Query Frame = 1


Query: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSC 60
           MKI CDVC K  A+V C +DEAALC  CD  +H ANKLA KH R  L      +   P C
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHL---NSLSTKFPRC 60

Query: 61  DICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVS 109
           DICQ + AF+F +EDRA+LCR+CD  IH A+  +  H RFL TG+KV+
Sbjct: 61  DICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVA 105

[Close]

BLAST of CmaCh20G008170 vs. NCBI nr
Match: gi|659122164|ref|XP_008461001.1| (PREDICTED: probable salt tolerance-like protein At1g75540 [Cucumis melo])

HSP 1 Score: 234.6 bits (597), Expect = 1.6e-58
Identity = 131/209 (62.68%), Postives = 144/209 (68.90%), Query Frame = 1


Query: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTA--NSPP 60
           MKI CDVC+KEEASVFCPSDEAALC ACD  VHRANKLA KHSRF+L  S  +A   S P
Sbjct: 1   MKIRCDVCDKEEASVFCPSDEAALCPACDRQVHRANKLASKHSRFSLLHSAASAAATSQP 60

Query: 61  SCDICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSS-S 120
            CD+CQ++RAFLF  EDRAILCRECDIPIH  SEHTQKHSRFLLTGVKVSPS ATSSS S
Sbjct: 61  LCDVCQIQRAFLFCREDRAILCRECDIPIHDTSEHTQKHSRFLLTGVKVSPSTATSSSCS 120

Query: 121 SSISGGGDESEEVTIEAEIGIFKARSRKEAKMG-SKGLLRGPLMEDLQAPIVGNFGGMSE 180
           SS+  GG+E+E        G+ K  SRK +KMG SKGL+                     
Sbjct: 121 SSVGSGGEENE--------GLLKKCSRKRSKMGFSKGLV--------------------- 171

Query: 181 NGVSFSTSNISEYLESLPGWCVEEFLDSS 206
                    ISEYLESLPGWCVE+FLDSS
Sbjct: 181 ---------ISEYLESLPGWCVEDFLDSS 171

[Close]

BLAST of CmaCh20G008170 vs. NCBI nr
Match: gi|449464708|ref|XP_004150071.1| (PREDICTED: B-box zinc finger protein 21-like [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 2.8e-58
Identity = 131/217 (60.37%), Postives = 148/217 (68.20%), Query Frame = 1


Query: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTAN----S 60
           MKI CDVC+KEEASVFCPSDEAALC+ CD  +HRANKLA +H+RF+L  S+ +A+    S
Sbjct: 1   MKIRCDVCDKEEASVFCPSDEAALCAPCDRQIHRANKLASQHNRFSLLHSSASASAAATS 60

Query: 61  PPSCDICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSS 120
            P CDICQ+RRAFLF  EDRAILCRECDIPIH  SEHTQKHSRFLLTGVKVSPSPATSSS
Sbjct: 61  EPLCDICQIRRAFLFCREDRAILCRECDIPIHDTSEHTQKHSRFLLTGVKVSPSPATSSS 120

Query: 121 -SSSISGGGDESEEVTIEAEIGIFKARSRKEAKMG-SKGLLRGPLMEDLQAPIVGNFGGM 180
            SSS++  G+E+E        G  K  SRK +KMG SKGL+                   
Sbjct: 121 CSSSVASSGEENE--------GSLKKCSRKRSKMGFSKGLV------------------- 179

Query: 181 SENGVSFSTSNISEYLESLPGWCVEEFLDSSCVADVF 212
                      ISEYLESLPGWCVEEFLDSS    +F
Sbjct: 181 -----------ISEYLESLPGWCVEEFLDSSSSPHLF 179

[Close]

BLAST of CmaCh20G008170 vs. NCBI nr
Match: gi|1000979738|ref|XP_015570812.1| (PREDICTED: B-box zinc finger protein 20 isoform X1 [Ricinus communis])

HSP 1 Score: 207.6 bits (527), Expect = 2.1e-50
Identity = 113/216 (52.31%), Postives = 144/216 (66.67%), Query Frame = 1


Query: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSC 60
           MKI CDVC+K EASVFC +DEAALC ACD HVH ANKLA KH RF+L R++  +   P C
Sbjct: 32  MKIKCDVCDKSEASVFCSADEAALCEACDRHVHHANKLASKHHRFSLLRTS--SKQSPLC 91

Query: 61  DICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSSI 120
           DICQ RRAFLF  EDRAILCRECDIPIH A+EHT+KH+RFLLTG+K+S S +   +SSS 
Sbjct: 92  DICQERRAFLFCQEDRAILCRECDIPIHKANEHTKKHNRFLLTGIKLSNSSSLYPTSSS- 151

Query: 121 SGGGDESEEVTIEAEIGIFKAR--SRKEAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENG 180
           S    +S+++T   +  + +    +       S  +L    +E   +P         ++ 
Sbjct: 152 SNSSCDSKKITTSNKKSLQQQPYVNNINTPSFSNEMLSSSSVERASSPSSTAAYNNFDDN 211

Query: 181 VSFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV 215
           VS STS+ISEYLE+LPGW V++FLD +   D FCKV
Sbjct: 212 VSISTSSISEYLEALPGWRVDDFLDPAIATDGFCKV 244

[Close]

BLAST of CmaCh20G008170 vs. NCBI nr
Match: gi|763791164|gb|KJB58160.1| (hypothetical protein B456_009G197000 [Gossypium raimondii])

HSP 1 Score: 207.2 bits (526), Expect = 2.8e-50
Identity = 116/221 (52.49%), Postives = 145/221 (65.61%), Query Frame = 1


Query: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSC 60
           MKI CDVCNKEEASVFC +DEAALC ACDH VH ANKLA KH RF+L   + ++   P C
Sbjct: 1   MKIQCDVCNKEEASVFCTADEAALCDACDHRVHHANKLASKHQRFSLLHPS-SSKQIPLC 60

Query: 61  DICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPA--TSSSSS 120
           DICQ +RAFLF  +DRAILCR+CD+PIH A+EHT+KH+RFLLTGVK+SP+ A  TSSSSS
Sbjct: 61  DICQEKRAFLFCQQDRAILCRDCDVPIHAANEHTKKHNRFLLTGVKLSPTTAIYTSSSSS 120

Query: 121 SISGGGDESEEV-TIEAEIGIFKARSRKEAKMGSKGLLRGPLMEDLQAPIVGNFGGMSEN 180
           S++   +    V   +++  +  + S     + S  L +   +    A +  N  G    
Sbjct: 121 SVASLSNLGHSVPEFKSQQSVKNSVSASTPNLNSTSLAKSSSISTTSAAVTNNKSGGDNL 180

Query: 181 GVSF---STSNISEYL-ESLPGWCVEEFLDSSCVADVFCKV 215
             S    S S+ISEYL E LPGW VE+FLDSS  +  FCKV
Sbjct: 181 LASVEGGSASSISEYLIEMLPGWHVEDFLDSSSPSFGFCKV 220

[Close]

BLAST of CmaCh20G008170 vs. NCBI nr
Match: gi|659094446|ref|XP_008448064.1| (PREDICTED: B-box zinc finger protein 20-like isoform X1 [Cucumis melo])

HSP 1 Score: 206.8 bits (525), Expect = 3.7e-50
Identity = 121/227 (53.30%), Postives = 143/227 (63.00%), Query Frame = 1


Query: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSC 60
           MKI CDVC++ EASVFC +DEAALC ACD HVHRANKLA KHSRF+L +  P     P C
Sbjct: 1   MKIRCDVCDQTEASVFCYADEAALCHACDLHVHRANKLAGKHSRFSLLQ--PIKKDSPPC 60

Query: 61  DICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSSI 120
           DICQ RRA +F  +DRAILCRECDI IH  +EHTQKH+RFLLTGVK+S S   S  +SS 
Sbjct: 61  DICQERRALVFCQQDRAILCRECDISIHETNEHTQKHNRFLLTGVKLS-STCFSYQTSSS 120

Query: 121 SGGGDESEEVTIEAEIGIFKARSRKEAKMGSKG--LLRGPLMEDLQAPIVGNF-----GG 180
           S G D   +  ++ + G   A   K  KM +K   +      E    P   N      G 
Sbjct: 121 SNGCD--IDAPMDVKTGSSNASCSKRPKMAAKDQQISTSHSAEKATPPSTSNHLVDQDGQ 180

Query: 181 MSENGVSFSTSNISEYLESLPGWCVEEFLDSS------CVADVFCKV 215
              +G SFSTS+ISEYLE+LPGWCVEEFLD S        A+ FCK+
Sbjct: 181 ALSDGGSFSTSSISEYLETLPGWCVEEFLDPSAAAAAAAAANRFCKI 222

The following BLAST results are available for this feature:

BLAST of CmaCh20G008170 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BBX20_ARATH	2.3e-44	49.77	B-box zinc finger protein 20 OS=Arabidopsis thaliana GN=BBX20 PE=1 SV=1	[more]
BBX21_ARATH	2.3e-44	45.41	B-box zinc finger protein 21 OS=Arabidopsis thaliana GN=BBX21 PE=1 SV=1	[more]
BBX22_ARATH	1.4e-28	52.42	B-box zinc finger protein 22 OS=Arabidopsis thaliana GN=BBX22 PE=1 SV=2	[more]
BBX23_ARATH	8.8e-28	44.87	B-box zinc finger protein 23 OS=Arabidopsis thaliana GN=BBX23 PE=2 SV=1	[more]
BBX24_ARATH	4.4e-27	53.70	B-box zinc finger protein 24 OS=Arabidopsis thaliana GN=BBX24 PE=1 SV=1	[more]

BLAST of CmaCh20G008170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIV6_CUCSA	2.0e-58	60.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G250430 PE=4 SV=1	[more]
A0A0D2UQI6_GOSRA	2.0e-50	52.49	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G197000 PE=4 SV=1	[more]
A0A0B0NAD1_GOSAR	3.3e-50	51.82	Uncharacterized protein OS=Gossypium arboreum GN=F383_07959 PE=4 SV=1	[more]
B9RHB2_RICCO	4.4e-50	52.09	Salt-tolerance protein, putative OS=Ricinus communis GN=RCOM_1449200 PE=4 SV=1	[more]
A0A0D2S4I9_GOSRA	5.7e-50	52.27	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G197000 PE=4 SV=1	[more]

BLAST of CmaCh20G008170 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39070.1	1.3e-45	49.77	B-box zinc finger family protein	[more]
AT1G75540.1	1.3e-45	45.41	salt tolerance homolog2	[more]
AT1G78600.2	7.6e-30	52.42	light-regulated zinc finger protein 1	[more]
AT4G10240.1	4.9e-29	44.87	B-box zinc finger family protein	[more]
AT1G06040.1	2.5e-28	53.70	B-box zinc finger family protein	[more]

BLAST of CmaCh20G008170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659122164\|ref\|XP_008461001.1\|	1.6e-58	62.68	PREDICTED: probable salt tolerance-like protein At1g75540 [Cucumis melo]	[more]
gi\|449464708\|ref\|XP_004150071.1\|	2.8e-58	60.37	PREDICTED: B-box zinc finger protein 21-like [Cucumis sativus]	[more]
gi\|1000979738\|ref\|XP_015570812.1\|	2.1e-50	52.31	PREDICTED: B-box zinc finger protein 20 isoform X1 [Ricinus communis]	[more]
gi\|763791164\|gb\|KJB58160.1\|	2.8e-50	52.49	hypothetical protein B456_009G197000 [Gossypium raimondii]	[more]
gi\|659094446\|ref\|XP_008448064.1\|	3.7e-50	53.30	PREDICTED: B-box zinc finger protein 20-like isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000315	Znf_B-box

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0048583	regulation of response to stimulus
biological_process	GO:0044699	single-organism process
cellular_component	GO:0005622	intracellular
cellular_component	GO:0016020	membrane
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G008170.1	CmaCh20G008170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000315	B-box-type zinc finger	PFAM	PF00643	zf-B_box	coord: 4..43 score: 2.
IPR000315	B-box-type zinc finger	SMART	SM00336	bboxneu5	coord: 55..102 score: 1.6E-8coord: 4..47 score: 1.
IPR000315	B-box-type zinc finger	PROFILE	PS50119	ZF_BBOX	coord: 1..47 score: 10
None	No IPR available	PANTHER	PTHR31832	FAMILY NOT NAMED	coord: 1..213 score: 2.5
None	No IPR available	PANTHER	PTHR31832:SF6	SUBFAMILY NOT NAMED	coord: 1..213 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G008170	Cucsa.109250	Cucumber (Gy14) v1	cgycmaB0253
CmaCh20G008170	Cucsa.377860	Cucumber (Gy14) v1	cgycmaB1039
CmaCh20G008170	Cla016597	Watermelon (97103) v1	cmawmB544
CmaCh20G008170	Cla015894	Watermelon (97103) v1	cmawmB526
CmaCh20G008170	Csa2G250430	Cucumber (Chinese Long) v2	cmacuB542
CmaCh20G008170	Csa7G004690	Cucumber (Chinese Long) v2	cmacuB575
CmaCh20G008170	MELO3C023341	Melon (DHL92) v3.5.1	cmameB503
CmaCh20G008170	MELO3C013430	Melon (DHL92) v3.5.1	cmameB512
CmaCh20G008170	ClCG02G004670	Watermelon (Charleston Gray)	cmawcgB485
CmaCh20G008170	ClCG11G004010	Watermelon (Charleston Gray)	cmawcgB477
CmaCh20G008170	CSPI02G12620	Wild cucumber (PI 183967)	cmacpiB547
CmaCh20G008170	CSPI07G00290	Wild cucumber (PI 183967)	cmacpiB580
CmaCh20G008170	CmoCh20G008250	Cucurbita moschata (Rifu)	cmacmoB551
CmaCh20G008170	Lsi11G011360	Bottle gourd (USVL1VR-Ls)	cmalsiB514
CmaCh20G008170	Lsi10G004080	Bottle gourd (USVL1VR-Ls)	cmalsiB507
CmaCh20G008170	Cp4.1LG15g05520	Cucurbita pepo (Zucchini)	cmacpeB561
CmaCh20G008170	Cp4.1LG16g02630	Cucurbita pepo (Zucchini)	cmacpeB565
CmaCh20G008170	Cp4.1LG02g07680	Cucurbita pepo (Zucchini)	cmacpeB570
CmaCh20G008170	MELO3C023341.2	Melon (DHL92) v3.6.1	cmamedB580
CmaCh20G008170	MELO3C013430.2	Melon (DHL92) v3.6.1	cmamedB588
CmaCh20G008170	CsaV3_2G015160	Cucumber (Chinese Long) v3	cmacucB0651
CmaCh20G008170	CsaV3_7G000270	Cucumber (Chinese Long) v3	cmacucB0689
CmaCh20G008170	Cla97C11G210750	Watermelon (97103) v2	cmawmbB567
CmaCh20G008170	Cla97C02G031640	Watermelon (97103) v2	cmawmbB570
CmaCh20G008170	Bhi10G001564	Wax gourd	cmawgoB0684
CmaCh20G008170	CsGy7G000250	Cucumber (Gy14) v2	cgybcmaB956
CmaCh20G008170	CsGy2G012640	Cucumber (Gy14) v2	cgybcmaB218
CmaCh20G008170	Carg25943	Silver-seed gourd	carcmaB0599

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh20G008170	CmaCh19G006870	Cucurbita maxima (Rimu)	cmacmaB444

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G008170	Silver-seed gourd	carcmaB0418
CmaCh20G008170	Silver-seed gourd	carcmaB0441
CmaCh20G008170	Wax gourd	cmawgoB0677
CmaCh20G008170	Cucurbita maxima (Rimu)	cmacmaB469
CmaCh20G008170	Cucurbita moschata (Rifu)	cmacmoB548
CmaCh20G008170	Cucurbita moschata (Rifu)	cmacmoB554
CmaCh20G008170	Cucurbita pepo (Zucchini)	cmacpeB585