CmaCh20G008090 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh20G008090
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr20 : 3810112 .. 3810647 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAGACATCCAAGGAAGGATAAAGAACAGCAGAAGCTCTCAAGCCTGGCGAAGGCGAAAGCTCTCAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTCAAGATATCATCATCGTTAACACAATTCTCAAATACAGAATGGATCATAGAACAAGCAAAACCAACAATGCAGTGGGATTTTCTTTTATATGCAAAAAGTAAAGATATACCATCCAACAATGATCAGCAAGCCATGGAGGACAGAGCTGACAAAGTGAAAAGGATGGATATTAATTTGTGGGAACTGTAAATCACTGAAGCACTCTGAGAACTGCTAAAGAGGTATATATCAAGTCCCCAGTCAGCCAATGGGGGAATTTAGAAAACCATGTTTATGTAATCAAACAAAGTTTAATCTGTAGAGTGCATGGATGATATTATTGTTTTATTAGAGTCTCAGACATCCAAGGAAGGATAAGAACAGCAGAAGCTCTCAAGCCTGGCGAAGGCGAAAGCTCTCAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCT

mRNA sequence

TCAGACATCCAAGGAAGGATAAAGAACAGCAGAAGCTCTCAAGCCTGGCGAAGGCGAAAGCTCTCAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTCAAGATATCATCATCGTTAACACAATTCTCAAATACAGAATGGATCATAGAACAAGCAAAACCAACAATGCAGTGGGATTTTCTTTTATATGCAAAAAGTAAAGATATACCATCCAACAATGATCAGCAAGCCATGGAGGACAGAGCTGACAAAGTGAAAAGGATGGATATTAATTTGTGGGAACTAGTCTCAGACATCCAAGGAAGGATAAGAACAGCAGAAGCTCTCAAGCCTGGCGAAGGCGAAAGCTCTCAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCT

Coding sequence (CDS)

TCAGACATCCAAGGAAGGATAAAGAACAGCAGAAGCTCTCAAGCCTGGCGAAGGCGAAAGCTCTCAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTCAAGATATCATCATCGTTAACACAATTCTCAAATACAGAATGGATCATAGAACAAGCAAAACCAACAATGCAGTGGGATTTTCTTTTATATGCAAAAAGTAAAGATATACCATCCAACAATGATCAGCAAGCCATGGAGGACAGAGCTGACAAAGTGAAAAGGATGGATATTAATTTGTGGGAACTAGTCTCAGACATCCAAGGAAGGATAAGAACAGCAGAAGCTCTCAAGCCTGGCGAAGGCGAAAGCTCTCAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCT

Protein sequence

SDIQGRIKNSRSSQAWRRRKLSGGHCECFEKQAFKISSSLTQFSNTEWIIEQAKPTMQWDFLLYAKSKDIPSNNDQQAMEDRADKVKRMDINLWELVSDIQGRIRTAEALKPGEGESSQAATANVLRNKP
Homology
[Close]
BLAST of CmaCh20G008090 vs. TrEMBL
Match: A0A0A0KJ49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486800 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-08
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 1 

Query: 73  NNDQQAMEDRADKVKRMDIN-------LWELVSDIQGRIRTAEALKPGEGESSQAATANV 131
           N + + +E+R   ++   +N       L+  VSDIQGRI+TAEALKPGEGESSQAATANV
Sbjct: 31  NPNPKFIENRKFHIQAFRLNRQKPKCILFVRVSDIQGRIKTAEALKPGEGESSQAATANV 90

[Close]
BLAST of CmaCh20G008090 vs. TrEMBL
Match: A0A059B8W6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H05083 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-06
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1 

Query: 96  LVSDIQGRIRTAEALKPGEGESSQAATANVLRNKP 131
           +VSDIQGRI+ A ALKPGEG+SSQAATANVLRNKP
Sbjct: 1   MVSDIQGRIKAALALKPGEGKSSQAATANVLRNKP 35

[Close]
BLAST of CmaCh20G008090 vs. NCBI nr
Match: gi|700193203|gb|KGN48407.1| (hypothetical protein Csa_6G486800 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 3.6e-08
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 1 

Query: 73  NNDQQAMEDRADKVKRMDIN-------LWELVSDIQGRIRTAEALKPGEGESSQAATANV 131
           N + + +E+R   ++   +N       L+  VSDIQGRI+TAEALKPGEGESSQAATANV
Sbjct: 31  NPNPKFIENRKFHIQAFRLNRQKPKCILFVRVSDIQGRIKTAEALKPGEGESSQAATANV 90

[Close]
BLAST of CmaCh20G008090 vs. NCBI nr
Match: gi|629096449|gb|KCW62444.1| (hypothetical protein EUGRSUZ_H05083 [Eucalyptus grandis])

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-06
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1 

Query: 96  LVSDIQGRIRTAEALKPGEGESSQAATANVLRNKP 131
           +VSDIQGRI+ A ALKPGEG+SSQAATANVLRNKP
Sbjct: 1   MVSDIQGRIKAALALKPGEGKSSQAATANVLRNKP 35

The following BLAST results are available for this feature:
BLAST of CmaCh20G008090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh20G008090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJ49_CUCSA2.5e-0858.46Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486800 PE=4 SV=1[more]
A0A059B8W6_EUCGR1.4e-0685.71Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H05083 PE=4 SV=1[more]
BLAST of CmaCh20G008090 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh20G008090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193203|gb|KGN48407.1|3.6e-0858.46hypothetical protein Csa_6G486800 [Cucumis sativus][more]
gi|629096449|gb|KCW62444.1|2.0e-0685.71hypothetical protein EUGRSUZ_H05083 [Eucalyptus grandis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G008090.1CmaCh20G008090.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh20G008090Watermelon (97103) v2cmawmbB567
CmaCh20G008090Watermelon (97103) v2cmawmbB570
CmaCh20G008090Wax gourdcmawgoB0677
CmaCh20G008090Wax gourdcmawgoB0684
CmaCh20G008090Cucurbita maxima (Rimu)cmacmaB469
CmaCh20G008090Cucurbita maxima (Rimu)cmacmaB444
CmaCh20G008090Cucumber (Gy14) v1cgycmaB0253
CmaCh20G008090Cucurbita moschata (Rifu)cmacmoB548
CmaCh20G008090Cucurbita moschata (Rifu)cmacmoB551
CmaCh20G008090Cucurbita moschata (Rifu)cmacmoB554
CmaCh20G008090Wild cucumber (PI 183967)cmacpiB547
CmaCh20G008090Wild cucumber (PI 183967)cmacpiB580
CmaCh20G008090Cucumber (Chinese Long) v2cmacuB542
CmaCh20G008090Melon (DHL92) v3.5.1cmameB503
CmaCh20G008090Watermelon (Charleston Gray)cmawcgB477
CmaCh20G008090Watermelon (97103) v1cmawmB526
CmaCh20G008090Watermelon (97103) v1cmawmB544
CmaCh20G008090Cucurbita pepo (Zucchini)cmacpeB565
CmaCh20G008090Cucurbita pepo (Zucchini)cmacpeB570
CmaCh20G008090Cucurbita pepo (Zucchini)cmacpeB585
CmaCh20G008090Bottle gourd (USVL1VR-Ls)cmalsiB507
CmaCh20G008090Bottle gourd (USVL1VR-Ls)cmalsiB514
CmaCh20G008090Cucumber (Gy14) v2cgybcmaB218
CmaCh20G008090Cucumber (Gy14) v2cgybcmaB956
CmaCh20G008090Melon (DHL92) v3.6.1cmamedB580
CmaCh20G008090Silver-seed gourdcarcmaB0441
CmaCh20G008090Silver-seed gourdcarcmaB0599
CmaCh20G008090Silver-seed gourdcarcmaB1144
CmaCh20G008090Cucumber (Chinese Long) v3cmacucB0651