CmaCh20G006520 (gene) Cucurbita maxima (Rimu)

NameCmaCh20G006520
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr20 : 3010621 .. 3011498 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCTTTTGGTTTCATTGATTATGCCGAAAACCATGATGGTCATACAAATCAACGCTTTCGTCTCTTTATACAGCCTTGGTTGCTCTGTTTCCGACCTGCCATTGACATGGGAACCGTCCTCGAGACAAAACCCACCACCACTTTGGCGGCCTATCTTGACCTTGAAGATGACGAAACAAGAATTTCTAGAATCGACCCGTCCTGCCCCAGTTGTCGATGCTCCAGAAATTCCGGCCGAGACTGCTCCGCCATTTCTCGCCCACCAAAGCGAAATCTTTCTCGGATGGCCAGAGCCATCGTGTTTGGTACCATTCTGGTCAGTAGTGATTTGGTGTAGTTTAGTTGTTTATAACTTTGTTCGTTTTTTAGCACGTGGGTCTTTTTTGTTCCTCTGTTTTAGATCAAAAAAGTTCGTGAGAGAAGAAGCAACCACCAACAGAAATCTGACCGCCGGAAACGAAGTTCATCCCTGGATTCTGGAAGTTCTCCGGTAGGCGGAATTTACCAAAAAAACAGAGACAACCAACTAGTGGGAGTGGAGCCATCTGGGTCATCTCAGTCTTTTCCAATTTCAATATCTAAACCCAGAATTTCGGAAAAGAAAGCCAATGGGAGTGCAACCATCGGTGTGAGGCAGGGGAGTTGCTATGCATTTAATTCCGGCGTTGGTTTGCTATTAGTGAGTTCAGGAGGGACAGTGATGCAGGGGAGAGTGATTGGCATTTTAATCACATCAATTTGGGTATACTTTTTTGCTTGGATGCACATGGAGGATCGCTGGCTGAGGAAGAAACCTACAGAATTTGCAGAAACAGAGGTGAGGGGCACTCTGAGGAGTGGCTGTCGGAACACAATCGGACCTCTGTTTCGTGTTTAA

mRNA sequence

CTTCTTTTGGTTTCATTGATTATGCCGAAAACCATGATGGTCATACAAATCAACGCTTTCGTCTCTTTATACAGCCTTGGTTGCTCTGTTTCCGACCTGCCATTGACATGGGAACCGTCCTCGAGACAAAACCCACCACCACTTTGGCGGCCTATCTTGACCTTGAAGATGACGAAACAAGAATTTCTAGAATCGACCCGTCCTGCCCCAGTTGTCGATGCTCCAGAAATTCCGGCCGAGACTGCTCCGCCATTTCTCGCCCACCAAAGCGAAATCTTTCTCGGATGGCCAGAGCCATCGTGTTTGGTACCATTCTGATCAAAAAAGTTCGTGAGAGAAGAAGCAACCACCAACAGAAATCTGACCGCCGGAAACGAAGTTCATCCCTGGATTCTGGAAGTTCTCCGGTAGGCGGAATTTACCAAAAAAACAGAGACAACCAACTAGTGGGAGTGGAGCCATCTGGGTCATCTCAGTCTTTTCCAATTTCAATATCTAAACCCAGAATTTCGGAAAAGAAAGCCAATGGGAGTGCAACCATCGGTGTGAGGCAGGGGAGTTGCTATGCATTTAATTCCGGCGTTGGTTTGCTATTAGTGAGTTCAGGAGGGACAGTGATGCAGGGGAGAGTGATTGGCATTTTAATCACATCAATTTGGGTATACTTTTTTGCTTGGATGCACATGGAGGATCGCTGGCTGAGGAAGAAACCTACAGAATTTGCAGAAACAGAGGTGAGGGGCACTCTGAGGAGTGGCTGTCGGAACACAATCGGACCTCTGTTTCGTGTTTAA

Coding sequence (CDS)

ATGGGAACCGTCCTCGAGACAAAACCCACCACCACTTTGGCGGCCTATCTTGACCTTGAAGATGACGAAACAAGAATTTCTAGAATCGACCCGTCCTGCCCCAGTTGTCGATGCTCCAGAAATTCCGGCCGAGACTGCTCCGCCATTTCTCGCCCACCAAAGCGAAATCTTTCTCGGATGGCCAGAGCCATCGTGTTTGGTACCATTCTGATCAAAAAAGTTCGTGAGAGAAGAAGCAACCACCAACAGAAATCTGACCGCCGGAAACGAAGTTCATCCCTGGATTCTGGAAGTTCTCCGGTAGGCGGAATTTACCAAAAAAACAGAGACAACCAACTAGTGGGAGTGGAGCCATCTGGGTCATCTCAGTCTTTTCCAATTTCAATATCTAAACCCAGAATTTCGGAAAAGAAAGCCAATGGGAGTGCAACCATCGGTGTGAGGCAGGGGAGTTGCTATGCATTTAATTCCGGCGTTGGTTTGCTATTAGTGAGTTCAGGAGGGACAGTGATGCAGGGGAGAGTGATTGGCATTTTAATCACATCAATTTGGGTATACTTTTTTGCTTGGATGCACATGGAGGATCGCTGGCTGAGGAAGAAACCTACAGAATTTGCAGAAACAGAGGTGAGGGGCACTCTGAGGAGTGGCTGTCGGAACACAATCGGACCTCTGTTTCGTGTTTAA

Protein sequence

MGTVLETKPTTTLAAYLDLEDDETRISRIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRMARAIVFGTILIKKVRERRSNHQQKSDRRKRSSSLDSGSSPVGGIYQKNRDNQLVGVEPSGSSQSFPISISKPRISEKKANGSATIGVRQGSCYAFNSGVGLLLVSSGGTVMQGRVIGILITSIWVYFFAWMHMEDRWLRKKPTEFAETEVRGTLRSGCRNTIGPLFRV
BLAST of CmaCh20G006520 vs. TrEMBL
Match: A0A0A0KE38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G121450 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.0e-49
Identity = 135/226 (59.73%), Postives = 150/226 (66.37%), Query Frame = 1

Query: 1   MGTVLETKPTTTLAAYLDLEDDETRISRIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRM 60
           M TV  TKPTTTLAAYLDLED +T+      SCP+CRCS NS     AIS  PK  LSR 
Sbjct: 1   MATVRHTKPTTTLAAYLDLEDQQTQ------SCPTCRCSTNS-----AISLRPKPALSRT 60

Query: 61  ARAIVFGTILIKKVRERRSNHQQKSDRRKRSSSLDSGSSPV-----------GGIYQKNR 120
           ARAIVFGTILIK+VRER+ + Q KSD RKRS SLDS   PV            GI Q+NR
Sbjct: 61  ARAIVFGTILIKRVRERKIHRQPKSDGRKRSLSLDSVRVPVKENRELVKKELDGINQENR 120

Query: 121 DNQLVGVEPSGSSQSFPISISKPRISEKKAN-GSATIGVRQG-------SCYAFNSGVGL 180
           +  L     SGS QSF ISIS+P+IS KK   G   IGV+Q        SCYAFNS V L
Sbjct: 121 EISL----SSGSIQSFSISISEPKISNKKTGCGIEAIGVKQREVEWSRRSCYAFNSSVRL 180

Query: 181 LLVSSGGTVMQGRVIGILITSIWVYFFAWMHMEDRWLRKKPTEFAE 208
           L+VS G TVMQGRV+GILITSI VYFFAWM MED WL+KK T+  E
Sbjct: 181 LMVSLGVTVMQGRVLGILITSISVYFFAWMQMEDCWLKKKATKCME 211

BLAST of CmaCh20G006520 vs. NCBI nr
Match: gi|659094757|ref|XP_008448227.1| (PREDICTED: uncharacterized protein LOC103490482 [Cucumis melo])

HSP 1 Score: 211.1 bits (536), Expect = 2.1e-51
Identity = 135/226 (59.73%), Postives = 153/226 (67.70%), Query Frame = 1

Query: 1   MGTVLETKPTTTLAAYLDLEDDETRISRIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRM 60
           MGTV  TKP TTLAA+LDLED +T+      SCP+CRCSRNS     AIS PPK  LSR 
Sbjct: 1   MGTVRHTKPPTTLAAFLDLEDQQTQ------SCPNCRCSRNS-----AISLPPKPALSRT 60

Query: 61  ARAIVFGTILIKKVRERRSNHQQKSDRRKRSSSLDSGSSPV-----------GGIYQKNR 120
           ARAIVFGTILIK+VRER+++ Q K D RKRS  LDS   PV            GIYQ+NR
Sbjct: 61  ARAIVFGTILIKRVRERKTHRQPKYDGRKRSLLLDSVRVPVKENRESVKRELDGIYQENR 120

Query: 121 DNQLVGVEPSGSSQSFPISISKPRISEKKAN-GSATIGVRQG-------SCYAFNSGVGL 180
           +  L     SGS QSF ISIS+P+IS KK   G+  IGV+Q        SCYAFNS V L
Sbjct: 121 EIPL----SSGSIQSFSISISEPKISNKKTGCGNEAIGVKQREVERSRRSCYAFNSSVRL 180

Query: 181 LLVSSGGTVMQGRVIGILITSIWVYFFAWMHMEDRWLRKKPTEFAE 208
           L+VS G TVMQGRV+GILITSI VYFFAWM MED WL+ K T+F E
Sbjct: 181 LMVSLGVTVMQGRVLGILITSISVYFFAWMQMEDCWLKNKATKFME 211

BLAST of CmaCh20G006520 vs. NCBI nr
Match: gi|449444407|ref|XP_004139966.1| (PREDICTED: uncharacterized protein LOC101210838 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 1.5e-49
Identity = 135/226 (59.73%), Postives = 150/226 (66.37%), Query Frame = 1

Query: 1   MGTVLETKPTTTLAAYLDLEDDETRISRIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRM 60
           M TV  TKPTTTLAAYLDLED +T+      SCP+CRCS NS     AIS  PK  LSR 
Sbjct: 1   MATVRHTKPTTTLAAYLDLEDQQTQ------SCPTCRCSTNS-----AISLRPKPALSRT 60

Query: 61  ARAIVFGTILIKKVRERRSNHQQKSDRRKRSSSLDSGSSPV-----------GGIYQKNR 120
           ARAIVFGTILIK+VRER+ + Q KSD RKRS SLDS   PV            GI Q+NR
Sbjct: 61  ARAIVFGTILIKRVRERKIHRQPKSDGRKRSLSLDSVRVPVKENRELVKKELDGINQENR 120

Query: 121 DNQLVGVEPSGSSQSFPISISKPRISEKKAN-GSATIGVRQG-------SCYAFNSGVGL 180
           +  L     SGS QSF ISIS+P+IS KK   G   IGV+Q        SCYAFNS V L
Sbjct: 121 EISL----SSGSIQSFSISISEPKISNKKTGCGIEAIGVKQREVEWSRRSCYAFNSSVRL 180

Query: 181 LLVSSGGTVMQGRVIGILITSIWVYFFAWMHMEDRWLRKKPTEFAE 208
           L+VS G TVMQGRV+GILITSI VYFFAWM MED WL+KK T+  E
Sbjct: 181 LMVSLGVTVMQGRVLGILITSISVYFFAWMQMEDCWLKKKATKCME 211

BLAST of CmaCh20G006520 vs. NCBI nr
Match: gi|470114546|ref|XP_004293475.1| (PREDICTED: uncharacterized protein At5g23160-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 67.4 bits (163), Expect = 3.7e-08
Identity = 70/224 (31.25%), Postives = 103/224 (45.98%), Query Frame = 1

Query: 1   MGTVLETKPTTTLAAYL--DLEDDETRISRIDPSCPSCRCSRNSGRDCSAISRPPK---- 60
           M  V+E+KP       L  + + ++T++   +        + +  R+CS IS        
Sbjct: 20  MEMVVESKPARRTRTKLIENTKAEKTKVVDKEEVQAPLTKTMSLDRECSMISSQTSKLPR 79

Query: 61  ----RNLSRMARAIVFGTILIKKVRERRSNHQQKSDRRKRSSSLDSGSSPVGGIYQKNRD 120
               R LS+  +A+VF TIL KKVRE R+  +Q S   KR  SL  G+            
Sbjct: 80  SRHSRTLSKAIKAVVFETILAKKVREGRA-FRQDSFGSKRGYSLSLGT------------ 139

Query: 121 NQLVGVEPSGSSQSFPISISKPRISEKKANGSATIGVR--QGSCYAFNSGVGLLLVSSGG 180
           ++L+      +S    ++    + S K    S     +  +GSC   NSG+ LLL+S G 
Sbjct: 140 DELMTTPSETNSHEVRVNFDSEKQSTKNQEDSVKKSKKNEKGSC-ELNSGMYLLLISLGI 199

Query: 181 TVMQGRVIGILITSIWVYFFAWMHMEDRWLR-KKPTEFAETEVR 212
           TV  GRV  IL TSIW+YFF+W        R +   E +E E R
Sbjct: 200 TVFWGRVFAILFTSIWLYFFSWRCANSNLRRPENVRELSEAESR 229

BLAST of CmaCh20G006520 vs. NCBI nr
Match: gi|1009128008|ref|XP_015880996.1| (PREDICTED: uncharacterized protein At5g23160-like [Ziziphus jujuba])

HSP 1 Score: 63.5 bits (153), Expect = 5.3e-07
Identity = 65/189 (34.39%), Postives = 91/189 (48.15%), Query Frame = 1

Query: 38  CSRNSGRDCSAISRPPKRNLSRMARAIVFGTILIKKVRERRSNHQQ----KSDRRKRSSS 97
           CS NS  + S   +P KR+ SR+ +A+ F TIL K+VR+R+ +           R+RSS 
Sbjct: 62  CSMNS--ENSITLQPQKRSFSRVIKAVFFETILAKRVRDRKESRSNIMLLSKSSRQRSSD 121

Query: 98  LDSGS----SPVGGIYQKNRDNQLVGVEPSGSSQSFPISISKPRIS---------EKKAN 157
            DS      SP    +Q       +G+    SS S   S  +P+IS         EK+ N
Sbjct: 122 SDSDELMNLSPANSNFQFQEIETKMGL--FHSSTSLSNSTPEPKISSRNSVKQKLEKQRN 181

Query: 158 ---GSATIGVRQGS--CYAFNSGVGLLLVSSGGTVMQGRVIGILITSIWVYFFAWMHMED 205
              G       + +  C   NSG+ LLL+S   TV+ GR+  IL TSIW YF +    E+
Sbjct: 182 HQHGEPETKSEETNKRCSVLNSGLYLLLISLTVTVLWGRICAILFTSIWFYFLSCWSPEN 241

BLAST of CmaCh20G006520 vs. NCBI nr
Match: gi|658013291|ref|XP_008341940.1| (PREDICTED: uncharacterized protein LOC103404762 [Malus domestica])

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 53/189 (28.04%), Postives = 82/189 (43.39%), Query Frame = 1

Query: 24  TRISRIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRMARAIVFGTILIKKVRERRSNHQQ 83
           T+   +D  C S   S NS      +   P +  S+  +A+VF TIL K+ R+R+   Q 
Sbjct: 50  TKTMSLDRGCSSPADSENSN-----MPPHPNKTFSKAVKAVVFETILAKRDRDRKVCRQD 109

Query: 84  KSDRRKRSSSLDSGSSPVGG-----IYQKNRDNQLVGVEPSGSSQSFPISISKPRISEKK 143
               ++  S  +  S  +GG     + ++ + N  + +    SS S     S   +SE +
Sbjct: 110 SFGSKRCFSFRNEASLNLGGDESVKVIEETKPNSEMSLHSRSSSSSLSALSSSSSVSESE 169

Query: 144 A-----------------NGSATIGVRQGSCYAFNSGVGLLLVSSGGTVMQGRVIGILIT 191
                             N +A     +   Y FNSG   LL+S   TV  G+ I IL++
Sbjct: 170 RLSKTLSDPTKQSLGNPNNPAAKPKNTKVGSYCFNSGTYFLLISLAVTVFWGKAIAILVS 229

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KE38_CUCSA1.0e-4959.73Uncharacterized protein OS=Cucumis sativus GN=Csa_6G121450 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659094757|ref|XP_008448227.1|2.1e-5159.73PREDICTED: uncharacterized protein LOC103490482 [Cucumis melo][more]
gi|449444407|ref|XP_004139966.1|1.5e-4959.73PREDICTED: uncharacterized protein LOC101210838 [Cucumis sativus][more]
gi|470114546|ref|XP_004293475.1|3.7e-0831.25PREDICTED: uncharacterized protein At5g23160-like [Fragaria vesca subsp. vesca][more]
gi|1009128008|ref|XP_015880996.1|5.3e-0734.39PREDICTED: uncharacterized protein At5g23160-like [Ziziphus jujuba][more]
gi|658013291|ref|XP_008341940.1|1.2e-0628.04PREDICTED: uncharacterized protein LOC103404762 [Malus domestica][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G006520.1CmaCh20G006520.1mRNA


The following gene(s) are paralogous to this gene:

None