CmaCh20G005270 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G005270
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_24
Location	Cma_Chr20 : 2533980 .. 2534568 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCCCTCATGGGCACTGTTTCTATTGGCTTTGAGCATGAATGCCCTCATGGGCATTGTTTCCTACTGAATCCTGATCATCTTAAAGAGCTTGGATCGTCTTATGCTGCATGCAATGTGGCTGATCCTCTCAAATTTGGTAAAAGTGGTCGTCATGGTAAAGCTCGTGATAGTATTAATGCAGCAAATGCCACCATTATGCATTTCTAATTATCTTAGTCGAGATGGAAAAGATTTTTCTATCATCCCGTGAGATCCCACATCGGTTGGAGAGAGGAAGGAGTGCCAGCAAAGACGCTGGGCCTCGAAAAGAAGTGGATTCTGAGATCGCATATCGATTGGAGAGGAGATCAAGGCATTTTTTATAAGGGTGTGAAACCTCACTAGCAGATGCGTTTTTAAATTTTGTAGGGAAGTCCGAAAGGAAAAGTTGAAAGATAACAATATCCGCTAAGTGCACCTAATATCATTCACTGATCTTCTACTTGTAGGAGTTGGGCTTGCCCCCATTCTGTTCCTGGACGGCAGCAGAAACTGCAGTTCACATTTGGATGTCAAGTGGTGTTGCCTCCCGAGAGCTTCCTGA

mRNA sequence

ATGAATGCCCTCATGGGCACTGTTTCTATTGGCTTTGAGCATGAATGCCCTCATGGGCATTGTTTCCTACTGAATCCTGATCATCTTAAAGAGCTTGGATCGTCTTATGCTGCATGCAATGTGGCTGATCCTCTCAAATTTGGTAAAAGTGGTCGTCATGGAGTTGGGCTTGCCCCCATTCTGTTCCTGGACGGCAGCAGAAACTGCAGTTCACATTTGGATGTCAAGTGGTGTTGCCTCCCGAGAGCTTCCTGA

Coding sequence (CDS)

ATGAATGCCCTCATGGGCACTGTTTCTATTGGCTTTGAGCATGAATGCCCTCATGGGCATTGTTTCCTACTGAATCCTGATCATCTTAAAGAGCTTGGATCGTCTTATGCTGCATGCAATGTGGCTGATCCTCTCAAATTTGGTAAAAGTGGTCGTCATGGAGTTGGGCTTGCCCCCATTCTGTTCCTGGACGGCAGCAGAAACTGCAGTTCACATTTGGATGTCAAGTGGTGTTGCCTCCCGAGAGCTTCCTGA

Protein sequence

MNALMGTVSIGFEHECPHGHCFLLNPDHLKELGSSYAACNVADPLKFGKSGRHGVGLAPILFLDGSRNCSSHLDVKWCCLPRAS

Homology

[Close]

BLAST of CmaCh20G005270 vs. TrEMBL
Match: A0A0A0KGK1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G148270 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 9.8e-14
Identity = 39/59 (66.10%), Postives = 42/59 (71.19%), Query Frame = 1


Query: 8    VSIGFEHECPHGHCFLLNPDHLKELGSSY------------AACNVADPLKFGKSGRHG 55
            V IGFEHECPHGH FLLNPDHLKELGS +            AACN+ DPLK+GKS RHG
Sbjct: 948  VYIGFEHECPHGHRFLLNPDHLKELGSPFATIKESHTHAQGAACNMVDPLKYGKSDRHG 1006

[Close]

BLAST of CmaCh20G005270 vs. TrEMBL
Match: A5B1Y7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017622 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-08
Identity = 32/63 (50.79%), Postives = 37/63 (58.73%), Query Frame = 1


Query: 8   VSIGFEHECPHGHCFLLNPDHLKELGSSYA--------------ACNVADPLKFGKSGRH 57
           V +GFEHECPHGH F+L P HL ELGSS++                 VADP K GK+G H
Sbjct: 788 VYVGFEHECPHGHRFILTPQHLNELGSSHSFPEDSHLSASMENLDHKVADPPKLGKNGGH 847

[Close]

BLAST of CmaCh20G005270 vs. TrEMBL
Match: F6GW82_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g00740 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-08
Identity = 32/63 (50.79%), Postives = 37/63 (58.73%), Query Frame = 1


Query: 8    VSIGFEHECPHGHCFLLNPDHLKELGSSYA--------------ACNVADPLKFGKSGRH 57
            V +GFEHECPHGH F+L P HL ELGSS++                 VADP K GK+G H
Sbjct: 950  VYVGFEHECPHGHRFILTPQHLNELGSSHSFPEDSHLSASMENLDHKVADPPKLGKNGGH 1009

[Close]

BLAST of CmaCh20G005270 vs. TrEMBL
Match: A0A068VJC2_COFCA (Uncharacterized protein (Fragment) OS=Coffea canephora GN=GSCOC_T00003955001 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-07
Identity = 30/61 (49.18%), Postives = 36/61 (59.02%), Query Frame = 1


Query: 7   TVSIGFEHECPHGHCFLLNPDHLKELGSSYAA--------------CNVADPLKFGKSGR 54
           ++ +GFEHECPHGH F+L PDHLK LGS YA                N+AD  K GK+G 
Sbjct: 331 SIYVGFEHECPHGHRFILTPDHLKGLGSPYAMPEESLVTSSIENSDHNMADSSKSGKNGG 390

[Close]

BLAST of CmaCh20G005270 vs. TrEMBL
Match: A0A068UFQ5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024116001 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-07
Identity = 30/61 (49.18%), Postives = 36/61 (59.02%), Query Frame = 1


Query: 7    TVSIGFEHECPHGHCFLLNPDHLKELGSSYAA--------------CNVADPLKFGKSGR 54
            ++ +GFEHECPHGH F+L PDHLK LGS YA                N+AD  K GK+G 
Sbjct: 959  SIYVGFEHECPHGHRFILTPDHLKGLGSPYAMPEESLVTSSIENSDHNMADSSKSGKNGG 1018

[Close]

BLAST of CmaCh20G005270 vs. NCBI nr
Match: gi|778713380|ref|XP_011657037.1| (PREDICTED: uncharacterized protein LOC105435794 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 39/59 (66.10%), Postives = 42/59 (71.19%), Query Frame = 1


Query: 8    VSIGFEHECPHGHCFLLNPDHLKELGSSY------------AACNVADPLKFGKSGRHG 55
            V IGFEHECPHGH FLLNPDHLKELGS +            AACN+ DPLK+GKS RHG
Sbjct: 948  VYIGFEHECPHGHRFLLNPDHLKELGSPFATIKESHTHAQGAACNMVDPLKYGKSDRHG 1006

[Close]

BLAST of CmaCh20G005270 vs. NCBI nr
Match: gi|659130920|ref|XP_008465419.1| (PREDICTED: uncharacterized protein LOC103503038 [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-13
Identity = 38/59 (64.41%), Postives = 42/59 (71.19%), Query Frame = 1


Query: 8    VSIGFEHECPHGHCFLLNPDHLKELGSSYAA------------CNVADPLKFGKSGRHG 55
            V IGFEHECPHGH FLLNPDHLKELGSS+A             CN+ DPLK+GK+ RHG
Sbjct: 949  VYIGFEHECPHGHRFLLNPDHLKELGSSFATIKESHTPAQGAECNMVDPLKYGKNDRHG 1007

[Close]

BLAST of CmaCh20G005270 vs. NCBI nr
Match: gi|147789547|emb|CAN59836.1| (hypothetical protein VITISV_017622 [Vitis vinifera])

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-08
Identity = 32/63 (50.79%), Postives = 37/63 (58.73%), Query Frame = 1


Query: 8   VSIGFEHECPHGHCFLLNPDHLKELGSSYA--------------ACNVADPLKFGKSGRH 57
           V +GFEHECPHGH F+L P HL ELGSS++                 VADP K GK+G H
Sbjct: 788 VYVGFEHECPHGHRFILTPQHLNELGSSHSFPEDSHLSASMENLDHKVADPPKLGKNGGH 847

[Close]

BLAST of CmaCh20G005270 vs. NCBI nr
Match: gi|225436452|ref|XP_002272611.1| (PREDICTED: uncharacterized protein LOC100267175 [Vitis vinifera])

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-08
Identity = 32/63 (50.79%), Postives = 37/63 (58.73%), Query Frame = 1


Query: 8    VSIGFEHECPHGHCFLLNPDHLKELGSSYA--------------ACNVADPLKFGKSGRH 57
            V +GFEHECPHGH F+L P HL ELGSS++                 VADP K GK+G H
Sbjct: 941  VYVGFEHECPHGHRFILTPQHLNELGSSHSFPEDSHLSASMENLDHKVADPPKLGKNGGH 1000

[Close]

BLAST of CmaCh20G005270 vs. NCBI nr
Match: gi|661873430|emb|CDP20935.1| (unnamed protein product, partial [Coffea canephora])

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-07
Identity = 30/61 (49.18%), Postives = 36/61 (59.02%), Query Frame = 1


Query: 7   TVSIGFEHECPHGHCFLLNPDHLKELGSSYAA--------------CNVADPLKFGKSGR 54
           ++ +GFEHECPHGH F+L PDHLK LGS YA                N+AD  K GK+G 
Sbjct: 331 SIYVGFEHECPHGHRFILTPDHLKGLGSPYAMPEESLVTSSIENSDHNMADSSKSGKNGG 390

The following BLAST results are available for this feature:

BLAST of CmaCh20G005270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh20G005270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGK1_CUCSA	9.8e-14	66.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G148270 PE=4 SV=1	[more]
A5B1Y7_VITVI	2.8e-08	50.79	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017622 PE=4 SV=1	[more]
F6GW82_VITVI	2.8e-08	50.79	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g00740 PE=4 SV=...	[more]
A0A068VJC2_COFCA	1.8e-07	49.18	Uncharacterized protein (Fragment) OS=Coffea canephora GN=GSCOC_T00003955001 PE=...	[more]
A0A068UFQ5_COFCA	1.8e-07	49.18	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024116001 PE=4 SV=1	[more]

BLAST of CmaCh20G005270 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh20G005270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778713380\|ref\|XP_011657037.1\|	1.4e-13	66.10	PREDICTED: uncharacterized protein LOC105435794 [Cucumis sativus]	[more]
gi\|659130920\|ref\|XP_008465419.1\|	2.4e-13	64.41	PREDICTED: uncharacterized protein LOC103503038 [Cucumis melo]	[more]
gi\|147789547\|emb\|CAN59836.1\|	4.0e-08	50.79	hypothetical protein VITISV_017622 [Vitis vinifera]	[more]
gi\|225436452\|ref\|XP_002272611.1\|	4.0e-08	50.79	PREDICTED: uncharacterized protein LOC100267175 [Vitis vinifera]	[more]
gi\|661873430\|emb\|CDP20935.1\|	2.6e-07	49.18	unnamed protein product, partial [Coffea canephora]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G005270.1	CmaCh20G005270.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G005270	Cucsa.385690	Cucumber (Gy14) v1	cgycmaB1065
CmaCh20G005270	Cla008699	Watermelon (97103) v1	cmawmB524
CmaCh20G005270	Csa6G148270	Cucumber (Chinese Long) v2	cmacuB554
CmaCh20G005270	MELO3C026954	Melon (DHL92) v3.5.1	cmameB489
CmaCh20G005270	ClCG02G021610	Watermelon (Charleston Gray)	cmawcgB481
CmaCh20G005270	CSPI06G11930	Wild cucumber (PI 183967)	cmacpiB560
CmaCh20G005270	CmoCh02G014110	Cucurbita moschata (Rifu)	cmacmoB563
CmaCh20G005270	Lsi10G012220	Bottle gourd (USVL1VR-Ls)	cmalsiB506
CmaCh20G005270	Cp4.1LG16g04970	Cucurbita pepo (Zucchini)	cmacpeB564
CmaCh20G005270	Cp4.1LG05g02780	Cucurbita pepo (Zucchini)	cmacpeB582
CmaCh20G005270	MELO3C026954.2	Melon (DHL92) v3.6.1	cmamedB568
CmaCh20G005270	CsaV3_6G014380	Cucumber (Chinese Long) v3	cmacucB0666
CmaCh20G005270	Cla97C02G047670	Watermelon (97103) v2	cmawmbB568
CmaCh20G005270	Bhi10G000102	Wax gourd	cmawgoB0697
CmaCh20G005270	CsGy6G012020	Cucumber (Gy14) v2	cgybcmaB790
CmaCh20G005270	Carg02592	Silver-seed gourd	carcmaB1266
CmaCh20G005270	Carg03200	Silver-seed gourd	carcmaB0473

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh20G005270	CmaCh02G013770	Cucurbita maxima (Rimu)	cmacmaB479

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G005270	Watermelon (97103) v2	cmawmbB565
CmaCh20G005270	Watermelon (97103) v2	cmawmbB594
CmaCh20G005270	Wax gourd	cmawgoB0674
CmaCh20G005270	Cucurbita maxima (Rimu)	cmacmaB261
CmaCh20G005270	Cucurbita maxima (Rimu)	cmacmaB490
CmaCh20G005270	Cucurbita maxima (Rimu)	cmacmaB493
CmaCh20G005270	Cucumber (Gy14) v1	cgycmaB0842
CmaCh20G005270	Cucurbita moschata (Rifu)	cmacmoB544
CmaCh20G005270	Cucurbita moschata (Rifu)	cmacmoB550
CmaCh20G005270	Cucurbita moschata (Rifu)	cmacmoB569
CmaCh20G005270	Wild cucumber (PI 183967)	cmacpiB551
CmaCh20G005270	Cucumber (Chinese Long) v2	cmacuB547
CmaCh20G005270	Cucumber (Chinese Long) v2	cmacuB561
CmaCh20G005270	Melon (DHL92) v3.5.1	cmameB520
CmaCh20G005270	Watermelon (Charleston Gray)	cmawcgB476
CmaCh20G005270	Watermelon (Charleston Gray)	cmawcgB506
CmaCh20G005270	Watermelon (97103) v1	cmawmB513
CmaCh20G005270	Watermelon (97103) v1	cmawmB523
CmaCh20G005270	Cucurbita pepo (Zucchini)	cmacpeB594
CmaCh20G005270	Bottle gourd (USVL1VR-Ls)	cmalsiB518
CmaCh20G005270	Bottle gourd (USVL1VR-Ls)	cmalsiB524
CmaCh20G005270	Cucumber (Gy14) v2	cgybcmaB388
CmaCh20G005270	Cucumber (Gy14) v2	cgybcmaB795
CmaCh20G005270	Melon (DHL92) v3.6.1	cmamedB597
CmaCh20G005270	Cucumber (Chinese Long) v3	cmacucB0656
CmaCh20G005270	Cucumber (Chinese Long) v3	cmacucB0672