CmaCh20G003730 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G003730
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	28S ribosomal S34, mitochondrial
Location	Cma_Chr20 : 1806282 .. 1814892 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTTGAACTTTTCTTTTCTGTACTATAGCAGCTATGAGTTGTGATTTAGGAGTTTCTTAACGTCCAGTATCTACTTCTCTGTTTATGAGCTTCAAATTCTGATTTTTCCTCGTATCTTGTCATCATTTGATTTTAAGGTAGGAGATATTTGAGGGACTGAGATTGAATGTTTTGGGGAAAATAGGAGTAGGATATTTTACAAAATTATTAGTTAAGCAAAATTACCCAACAGAAAAAAGAGTAGGATTGAAGGTAATTCATGAGGAAGCTATGAAAATATGAGCATCCAATGGCTTCCAAGTGTTACTGTTTTCTCATATAAGTTATGAGTTGAGGTGTGAGGAGGTTGGTGGTGATCCTTTTCATTGTTCTTCATCGATATGTTAATACTTCGCAACTGAAATCCAATGAAATTGACAGGAAAAGGAAATACAGGGACTTTCCTAGACTTAATAGTTTGTTTATAAAAGCTTAGATTAGCATATAATTATTGTAATGAGCATATTTGAGCGATAATTGATATATGTTGAGCTTAGGATGTGCTAAGTAACAAATGGGTTGTTGGATCCAAATATACAAATAAAGTTTTAATTTTGCGTGATTGAACTTGTGACCTTCAATTTGTGATATTTTACGTTTGTGTTTGTCTTTTGTTCTTGTGTGAAAATCTTTGTCTTTCGATCTTGTCTCAATAAATAAGCATTTTAAACATCTTCTAGGTTAGACAGTTACATTATTAATTATTTTTAGTAAAAGAGAATGGCAAATTTTTAAAAATATTTTTTAACAATTTGAAAAAAAAAAAATATATATATTAACAAAAGAAATGCCCAAAAATTTCCCATTTTGACTTTGCCCAAAGCCGCGGGGGAGCAGCGAAATAGCAAAGCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGACTCCAATGTCTGTCGCCAACAGAAGTGCGATCGGTGGAGCCCTACATTTCTCCCGCTTATCTTCTACCTTTATCAGAAGCTTCACCACCTCTTCGCCGTCTACCTCCACTCCGAACCCCAATGCCCCGACTGTTTGACTAAAATCAAGCGGAGGAAGAAGAACCTGTTCGAAGTAGTTCAGTTTTTGCCCAATTGGGGAGTAGGATACCATGTCGCCAAGGCTCATTGGGATGAAATATCATACCAGATCACCAAAATAAATCTGTACAAGGTATGCAGAATAGAATTTGAATTGGTTTCAAATTCAAATTCATTCACAAAAATCTCAACCGACTACGGAATCACCCTAGAAAATCTCAACCCACTCTGGAATCCCCTATAAAAGGACCTCCCTCCCCATCATTCAAATCACTCCTCCTCTCAATCTCACTTTAGTTTTCTGTTGTCACCAACANGATAATATGTCAACTATTAAGTTGTCTAAAAATCCTGTGTTGCATGGAAGGAGCAAGCACATCGATGTTCGATTTCATTTCTTGCGTGATTTGTGTAAAGAAGGCATTATTGAACTCAACTTTTGCCGAAGTGATGAACAAATCGCAGACCTATTCACAAAGCCCTTGAAACAACCATTGTTCGAGAAGCTCAGAAGAAAGATGGGGATATGCAGAATCCAAGATGTATATCAAGAAGATGAAATGAAGTCCTAAACTGATTTCGCAGAATTCAGTTTAAGGGAGGGTGTTGAAACTAATAATAGCTAATAATAGAATAGAATTTGAATTGGTTTCAAATTCAAATTCATTCACAAAAATCTCAACCGACTACGGAATCACCCTAGAAAATCTCAACCCACTCTGGAATCCCCTATAAAAGGACCTCCCTCCCCATCATTCAAATCACTCCTCCTCTCAATCTCACTTTAGTTTTCTGTTGTCACCAACATTGGGGAGTAGGATACCATGTCGCCAAGGCTCATTGGGATGAAATATCGTACCAGATCACCAAAATAAATCTGTACAAGGTATGCAGAATAGAATTTGAATTGGTTTCAAATTCAAATTCATTCACAAAAATCTCAACCGACTACGGAATCACCCTAGAAAATCTCAACCCACTCTGGAATCCCCTATAAAAGGACCTCCCTCCCCATCATTCAAATCACTCCTCCTCTCAATCTCACTTTAGTTTTCTGTTGTCACCAACAACTGGTATCAGAGCAATCTTGCAGCAGCAAAAAAATGGCAGCAGAAAAACAAGTTGAGAACTACGTTCAGCCCGCCATCCCGAGGTTCGACGGTCACTATGATCATTGGGCGATGTTGATGGAAAATTTTCTCAGATCAAAGGAGTTCTTTGATATGGTGGAAACAGGTTATGAAGAGCCAAATGAAGGCGAGGTACTCTCAGCTGATCGACAGCAACTGTTGGCAGCATCGAAGTTGAAGGACCTGAAGGTCAAGAACTATTTATTCCAGTCCATTGATAGGACTATCTTGGAAACAATGCTTCAGAAGAAGACATCCAAAGAAATTTGGGACTCTATGAGGAGGAAGTATCAAGGCTCAACGAGAGTAAAACGTGCTCAACTACAGGCAGTTAGAAGAGACTTTGAAATTCTCCAAATGCAAAAGGGAGAAACAGTGAATGATTATATTGGTAAGGTTATAAGTCTTGCAAGTAAAATGAGGATGCATGGCGGTTCAATCACAGATGTTGCGGTCGTAGAAAAGATTTTGCGATCATTAACACCAAAGTTCGATTACATTGTATGTTCTATCGAAGAAGCAAACAATGTCGAGGAAATGCAAATAGATGAACTCCAAAGCTCCCTGTTAGTACATGAGCAGAGGCTCAATCGTACAAGTGCAATAGAGGAGATGACAGCCTTAAAGATATCCACACCAAGTGAAACTTCAAGCTCTAGAGGTAGAGGGCAAAGAAGAGGCAGAGGTCGTGAGAGAGGCAGTCGAGAAAGAAGTGGAGATGTTGGCAGGTCAGCAGACCTAGTCAGAAACGATTATGACAACAAAGGCAAAAGACACTTTGACAAGTCTAAGGTGGAATGTTACAGATGTGGACGCCTTGGACATTACAAAAATGAATGCTATACCAGGCTCCAAAAGGAGAAAAGAAATCAATCCAATTTTATGGAGAGAAGAGAAGAAGAAACATTATTAATGTCATTTCATGCTATGAAGGTTGCAGATCAAGGTGTATGGGTCGTAGACTCTGGATGCAGCAATCATATGACAGGTTGTAAGGAATTCTTCTCAACTTTAGATGAAAATTTTCATACTACGGTCTCTCTTGGCAACAATTCATCTCTCCAAGTGATGGGAAAAGGAACCATAGATATCAAGACTAGAAATGGCTTTGTAGAGTCTATTTCTAATGTATTCTACATTCCTGATCTGAAGGCCAACTTACTTAGTATCGGTCAGTTACAAGAAAAGGGGTATGTGATCACATTCCAAAATGATGAATGTGAAATTTATGACTCCAAAAGAGGATCAATTGCTAAGATGAAGATGACCACCAACCGTCTATATCCGTTGACGTTAAATATCGTTGCCAAAAGTTTGATGGTGAAGAAAGAAGATACCACTTGGCTTTGGCATTTTAGGTATGGTCATCTACACTTCAAAGGATTAAAGACGTTGTCCTCAAAAAAGATGGTAACTGGGTTGCCAGATATTACTCCACCAACGGAAATTTGCGAGAGCTGTGTAGTAGCAAAACATGAAAGAAACTCTTTTCCATCTGGAAAATCAAGAAGAGCTCAAGCAATTTTGGAGTTGATTCATTCAGACATATGTGGTCCCATCTCTCCTGCATCAAATGGCAACAAGAAATATTTCATGACCCTCATCGATGATTTTAGTCGAAAAACATGGACTTATTTCTTGCACGCCAAATCAGAAGCCTTTGACTGCTTCAAAAAATTTTGTGCTACTATTAAAACCGAAACTGGAAGAAGAGTCAAGGTTTTAAGAACTGACAGAGGTGGAGAATTCTGCTCGAAAGAGTTTATTCAATTTTGTGAAGAGAAGGGCATACGGAGGCAATTAACAACAGCATATACACCACAACAAAATGGTGTGGCCGAAAGGAAAAACAGGACCATTCTAAACATGGTTCGAAGTTTACTAAATAAAGGAGAAGTCCCGAAGGAATTCTGGCCAGAAGCTGTTGTGTGGTCCGTTCACATTCTCAATCGGAGCCCTACCTTTTCTGTTAGAGACATGACTCCACAAGAAGCATGGAGCGGAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCATCAGAATTGGGTTTAAAGTTGCACAAGGACATTGACGGGCGAGAGGTTGATAATAGGTATTTCAAACAAATTGTGGGAAGTTTGATGTACCTAACTTCAACAAGACCAGACATCATGTATGCGGTTAGTATGATAAGTCGTTACATGGAGCATCCAACGGAAAAACATCTCAATGCAGCAAGAATGATACTTCGTTATGTGAGAGGAACCTCTGATTTGGGGGTATTCTACAAAAAAGGAGATGATCCGAAGATAGTTGGCTATACAGATAGCGACTATGCAGGTGATATAGACGATCGTAAAAGTACTTCAGGAAGTATTTTCTTGATGAGTTCAGGAGCTATTTGCTGGTCTTCAAAGAAGCAACCTATTGTAACACTCTCAACGACAGAAGCAGAATTTATGGCAGCAGCAGCATGCTCGTGCCAAGCAATTTGGTTAAGAAAAATGCTTGAAATTCTTAATCAGAAGCAACCCAGTACGACGGTTATATATTGTGATAATATGTCAACTATTAAGTTGTCTAAAAATCCTGTGTTGCATGGAAGGAGCAAGCACATCGATGTTCGATTTCATTTCTTGCGTGATTTGTGTAAAGAAGGCATTATTGAACTCAACTTTTGCCGAAGTGATGAACAAATCGCAGACCTATTCACAAAGCCCTTGAAACAACCATTGTTCGAGAAGCTCAGAAGAAAGATGGGGATATGCAGAATCCAAGATGTATATCAAGAAGATGAAATGAAGTCCTAAACTGATTTCGCAGAATTCAGTTTAAGGGAGGGTGTTGAAACTAATAATAGCTAATAATAGAATAGAATTTGAATTGGTTTCAAATTCAAATTCATTCACAAAAATCTCAACCGACTACGGAATCACCCTAGAAAATCTCAACCCACTCTGGAATCCCCTATAAAAGGACCTCCCTCCCCATCATTCAAATCACTCCTCCTCTCAATCTCACTTTAGTTTTCTGTTGTCACCAACATTGGGGAGTAGGATACCATGTCGCCAAGGCTCATTGGGATGAAATATCGTACCAGATCACCAAAATAAATCTGTACAAGGTATGCAGAATAGAATTTGAATTGGTTTCAAATTCAAATTCATTCACAAAAATCTCAACCGACTACGGAATCACCCTAGAAAATCTCAACCCACTCTGGAATCCCCTATAAAAGGACCTCCCTCCCCATCATTCAAATCACTCCTCCTCTCAATCTCACTTTAGTTTTCTGTTGTCACCAACATTGGGGAGTAGGATACCATGTCGCCAAGGCTCATTGGGATGAAATATCGTACCAGATCACCAAAATAAATCTGTACAAGGTATGTCTTCATCTGGTTTCTTTTCTTAGATCAATGTATGTGGCGGTTCATTTGAGATCATTCCTTCTCTATAATCTGCACAAAGTTTGAAACAAATGGTTTTCAGTTTCTCCAAGTGCTTACCATTTCTTATGTGCATTCAAGTAAACACAACGGTTTTGTTTACTTTAATCGTTTACGAAGATTTGTAGAATTTTAGACTCCGGAGGCGTTTGACATTTTTCCTATGACAATTGATAATCAAATTAGATCTGTTTTCTTTCAATGCTCTCTGATTCAGGATTTGAGTTCTTTTTACTTTCGATTGTTTTATACAGAGTGGCACGCATGGCAAGGCATGGGGCGTTGCTCATAAAGATGGTTAGTGATTCTATATCGCCAAATTTGTTCCTCAATCGTTATTAGAATTTCATTTTGCTGGAATTTTGTTCCAATAATTATATAGAAGAATGAGCAACAATTGGATCTCTTGTATGTTCAAACCTAGGCCAAGTTCTATAATTTGGGACCATGACATCAAAGAGCTAATGCCTTATAGTTGATTTAGATGATGAATGTTGGAAAATTATTCAATATTCACTATTTACTAATCTTTGATTTTGGTGTATAGGATTATGTTTCGTGACAATTTAAGTCTCGTTTGATAAGATTTTGTCTTTAGTTTTCTGATTTTGAAGTTCATGTTTGTTTCCTCCCAATTTTCATTTTATAGTTCTCACCTTTCTTAAGCAACCACTTTAAGTTCTTAGTCAAATTCTAAGAACAAAAAAGAAAAAGAAGTTTTTGGAAGCTACATTTTTAGCTTTCTAATCTCGGCTTAGTTTTTAAAATAACGGTAGAAAGAAGATAACAATAGGTGCAAGTAGTGTTTATAAACATACTGTGTTCTACAATAAATAGTCCGTAAGTTTTCAAGTTTTGAATTTTAAAGCATGAGACGTCCTAAAAGTTTATGTGAGATCCCACATTGGTTAGAGAGGGGAACGAAACATTCCTTATGGGTGTGGAAACCTCTCCTTAACAAACGCGTCTTAAAACCATGAGGCTACCAGTGATACGTAACGGGCCCAAACAGACAATATCTACTAGTGGTGGACTTGTGCCGTTACAGCTTAAGTTGTAGTTAGGTCGAGAAAGTTAGCTCTTGAGATTCATCCCTTTTGAACTCTCTACCGAGGCGACTCTGGACTCGGTTGGCAACCGTTATTGTATTGCTTACAAATGATAGTTAAAATTTAAGTTTCTAGGACTTATCTTCCTGTTTGTTATTGTTGCTTGTTGCAAACTACTTCCATCAATGACGGAGGTTGAAACGAATGTATTTTCCAGGTACGCCTATCGCAGAAGCTCCGAAGAAGATCAGTGGCGTTCACAAGCGCTGTTGGAAGTATATTGCTAGCTTACCGAGTTCGGGAGACAGCGACCCATCAGCTGAAGTTCAAACTTCATGACTGCGATTACAGTCCTTAAAAAATATAGTCAGGTTTCCTAACTTCATTATATGAGGGGCATTCTGTGCTTTACTTGCGATCCGGGATGAAATGAAAGATCAATCGTCCCGAACTTTGTGTAAGTTCGAACTCGATTCTCAGATACTTGTAGATTTTATTGTTGAATCGAGGTTTAAGAATCTGGTTGATATTTGTGAATCAGTGTTTTTGTCCTACTGCTGTGAGATGAATACAATAATGTTTCCTTTTTTAAACATGGAAAGTGTTGAAGAGTTCATTTGGGAAGAATTAAAAAAAAAAAAAAAAAATCAAAATTTTCAAGAATTATAATCATTTTCTTTGATGTATTGCTGTGTTCATTAAAATGTAACTTTGCAAGAAAAACTTAATTGGTTTCAATGACGTCTTTTTAATAGGTTTAAGAGGATTGGGAAGTACGACATGTGCTGGGCAAGCAACTAGTTTTTGTCTTAAGGTCATCTCGAACAGGTTATCGGAAATGACCAAAGAACAAAAAAAAGTCAAAAATAGATGCTGCATAAAATGTTCATCGTTGCCTGTCTAAAATTTGTGCGGCCCGATTTAAAAACTTGGGTGGAGATTCTATCTTAGTCAAAGTTAATGTGAACTAGTTGAAATAGGTTCGAGTTGGTGAGCTAGGTCTTAAATCATCCATTTAAAAGCTCTAGTTACCAATTTTCAGACAGTATTTAAGACCAAAATGGTGGCAAAAATCAGTTTTCTTTGTAGCCAATCTCAGACTTATATCATTAAATTCATGAAGCAAGGAAGGAATATAACAAGAGATTTGACATCTGGAGAAGAACAGAATCAACAGATAGCTTTGTTGGGCAATGAAAATATAAATTTGCACCAACATCATCTCACAAGTTCAATAATCATACCCTTTTGGTGTTACAGAAACTTAAACAGAAAAGAAATATTTAAAAATAATAATGTTAAATTAAAGAGAAATACCTATACAGATTCAAGTTCTTTCTTTTTTGAATTCCAGGGTCGTTCCATCTCTCAGAGTTTCTTGTGCATCATTTTCCATTCCAAGGATGAAAAGGGCGGCAGCTTGAAGATACAAGGCAGTTGGCCAGTC

mRNA sequence

ATGTGTTTGAACTTTTCTTTTCTGTACTATAGCAGCTATGAGTTTATCTACTTCTCTGTTTATGAGCTTCAAATTCTGATTTTTCCTCGTATCTTGTCATCATTTGATTTTAAGCCGCGGGGGAGCAGCGAAATAGCAAAGCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGACTCCAATGTCTGTCGCCAACAGAAGTGCGATCGGTGGAGCCCTACATTTCTCCCGCTTATCTTCTACCTTTATCAGAAGCTTCACCACCTCTTCGCCGTCTACCTCCACTCCGAACCCCAATGCCCCGACTGTTTGACTAAAATCAAGCGGAGGAAGAAGAACCTGTTCGAAGTAGTTCAGTTTTTGCCCAATTGGGGAGTAGGATACCATAGTGGCACGCATGGCAAGGCATGGGGCGTTGCTCATAAAGATGGTACGCCTATCGCAGAAGCTCCGAAGAAGATCAGTGGCGTTCACAAGCGCTGTTGGAAGTATATTGCTAGCTTACCGAGTTCGGGAGACAGCGACCCATCAGCTGAAGGTCGTTCCATCTCTCAGAGTTTCTTGTGCATCATTTTCCATTCCAAGGATGAAAAGGGCGGCAGCTTGAAGATACAAGGCAGTTGGCCAGTC

Coding sequence (CDS)

ATGTGTTTGAACTTTTCTTTTCTGTACTATAGCAGCTATGAGTTTATCTACTTCTCTGTTTATGAGCTTCAAATTCTGATTTTTCCTCGTATCTTGTCATCATTTGATTTTAAGCCGCGGGGGAGCAGCGAAATAGCAAAGCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGACTCCAATGTCTGTCGCCAACAGAAGTGCGATCGGTGGAGCCCTACATTTCTCCCGCTTATCTTCTACCTTTATCAGAAGCTTCACCACCTCTTCGCCGTCTACCTCCACTCCGAACCCCAATGCCCCGACTGTTTGACTAAAATCAAGCGGAGGAAGAAGAACCTGTTCGAAGTAGTTCAGTTTTTGCCCAATTGGGGAGTAGGATACCATAGTGGCACGCATGGCAAGGCATGGGGCGTTGCTCATAAAGATGGTACGCCTATCGCAGAAGCTCCGAAGAAGATCAGTGGCGTTCACAAGCGCTGTTGGAAGTATATTGCTAGCTTACCGAGTTCGGGAGACAGCGACCCATCAGCTGAAGGTCGTTCCATCTCTCAGAGTTTCTTGTGCATCATTTTCCATTCCAAGGATGAAAAGGGCGGCAGCTTGAAGATACAAGGCAGTTGGCCAGTC

Protein sequence

MCLNFSFLYYSSYEFIYFSVYELQILIFPRILSSFDFKPRGSSEIAKLERERERERERERDSNVCRQQKCDRWSPTFLPLIFYLYQKLHHLFAVYLHSEPQCPDCLTKIKRRKKNLFEVVQFLPNWGVGYHSGTHGKAWGVAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSAEGRSISQSFLCIIFHSKDEKGGSLKIQGSWPV

Homology

[Close]

BLAST of CmaCh20G003730 vs. TrEMBL
Match: A0A0A0KH76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188090 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 64/95 (67.37%), Postives = 70/95 (73.68%), Query Frame = 1


Query: 107 TKIKRRKKNLFEVVQFLPNWGVGYH--------------------SGTHGKAWGVAHKDG 166
           TK +++KKNLFEVVQFLPNWGVGYH                    SGTHGKAWG+AHK+G
Sbjct: 47  TKRRKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNG 106

Query: 167 TPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSAE 182
           TPI EAPKKISGVHKRCWKYIASLP SG+S  SAE
Sbjct: 107 TPIVEAPKKISGVHKRCWKYIASLPHSGESKTSAE 141

[Close]

BLAST of CmaCh20G003730 vs. TrEMBL
Match: B9HP97_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s04490g PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.8e-22
Identity = 53/91 (58.24%), Postives = 60/91 (65.93%), Query Frame = 1


Query: 110 KRRKKNLFEVVQFLPNWGVGYH--------------------SGTHGKAWGVAHKDGTPI 169
           +R+KKNLFEV QFLP WG+GYH                     G HGKAWG+AHKDG PI
Sbjct: 58  RRKKKNLFEVAQFLPQWGIGYHLAKSHWANVSYEITKINLYKDGRHGKAWGIAHKDGLPI 117

Query: 170 AEAPKKISGVHKRCWKYIASLPSSGDSDPSA 181
           A+APKKISGVHKRCWKYI SL  S +S  S+
Sbjct: 118 ADAPKKISGVHKRCWKYIPSLAKSIESKKSS 148

[Close]

BLAST of CmaCh20G003730 vs. TrEMBL
Match: A0A0B0MVM1_GOSAR (28S ribosomal S34, mitochondrial OS=Gossypium arboreum GN=F383_27881 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 50/90 (55.56%), Postives = 58/90 (64.44%), Query Frame = 1


Query: 110 KRRKKNLFEVVQFLPNWGVGYH--------------------SGTHGKAWGVAHKDGTPI 169
           +++KKNLFEV QFLPNWG+GYH                     G HGKAWGV HKDG P 
Sbjct: 49  RKKKKNLFEVAQFLPNWGLGYHMAKTHWTDVSYQITKINLYKDGRHGKAWGVVHKDGAPT 108

Query: 170 AEAPKKISGVHKRCWKYIASLPSSGDSDPS 180
           A+APKKISGVHKRCW+YI  L   GD+ P+
Sbjct: 109 ADAPKKISGVHKRCWRYIPHLSKPGDTPPT 138

[Close]

BLAST of CmaCh20G003730 vs. TrEMBL
Match: V4RU85_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029469mg PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.5e-21
Identity = 50/89 (56.18%), Postives = 58/89 (65.17%), Query Frame = 1


Query: 110 KRRKKNLFEVVQFLPNWGVGYH--------------------SGTHGKAWGVAHKDGTPI 169
           +R+KKNLFEV QFLPNWGVGYH                    +G HGKAWG+ HKDG P 
Sbjct: 53  RRKKKNLFEVAQFLPNWGVGYHMAKTHWANVSYEITKINLYKNGKHGKAWGIVHKDGLPA 112

Query: 170 AEAPKKISGVHKRCWKYIASLPSSGDSDP 179
            +AP+KISGVHKRCW+YI SL  S +S P
Sbjct: 113 TDAPRKISGVHKRCWRYIPSLSKSVESTP 141

[Close]

BLAST of CmaCh20G003730 vs. TrEMBL
Match: B9S383_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0731370 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.5e-21
Identity = 50/91 (54.95%), Postives = 61/91 (67.03%), Query Frame = 1


Query: 110 KRRKKNLFEVVQFLPNWGVGYH--------------------SGTHGKAWGVAHKDGTPI 169
           +++KKNL EV QFLPNWG+GYH                     G HGKAWG+AHK+G PI
Sbjct: 59  RKKKKNLVEVAQFLPNWGIGYHFAKSHWNEVSYEITKINLYKDGKHGKAWGIAHKNGLPI 118

Query: 170 AEAPKKISGVHKRCWKYIASLPSSGDSDPSA 181
           A+APKKISGVHKRCW+YI SL  S +S P++
Sbjct: 119 ADAPKKISGVHKRCWRYIPSLSKSLESKPTS 149

[Close]

BLAST of CmaCh20G003730 vs. TAIR10
Match: AT5G52370.1 (AT5G52370.1 unknown protein)

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-23
Identity = 56/119 (47.06%), Postives = 64/119 (53.78%), Query Frame = 1


Query: 82  FYLYQKLHHLFAVYLHSEPQCPDCLTKIKRRKKNLFEVVQFLPNWGVGYH---------- 141
           F L   L   F+    SE    D     +R+KKNL EV QFLPNWG+GYH          
Sbjct: 19  FRLSLNLLRNFSAAPASENPSSDSSKPKRRKKKNLIEVAQFLPNWGIGYHMAKAHWNGIS 78

Query: 142 ----------SGTHGKAWGVAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSA 181
                      G HGKAWG+ HKDG   AEAPKKISGVHKRCWKYI +L  +  +  SA
Sbjct: 79  YEITKINLYKDGRHGKAWGIVHKDGLRAAEAPKKISGVHKRCWKYIPNLSKTAPATTSA 137

[Close]

BLAST of CmaCh20G003730 vs. TAIR10
Match: AT5G58990.1 (AT5G58990.1 unknown protein)

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-23
Identity = 51/104 (49.04%), Postives = 60/104 (57.69%), Query Frame = 1


Query: 98  SEPQCPDCLTKIKRRKKNLFEVVQFLPNWGVGYH--------------------SGTHGK 157
           SE    D     +R+KKNL EV QFLPNWG+GYH                     G HGK
Sbjct: 41  SENPSSDSNKPKRRKKKNLIEVAQFLPNWGIGYHMAKAHWNGISYEITKINLYKDGRHGK 100

Query: 158 AWGVAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSAE 182
           AWG+ HKDG   AEAPKKISGVHKRCWKYI +L  +  +  +A+
Sbjct: 101 AWGIVHKDGLRAAEAPKKISGVHKRCWKYIPNLSKTTPATTTAD 144

[Close]

BLAST of CmaCh20G003730 vs. NCBI nr
Match: gi|449450774|ref|XP_004143137.1| (PREDICTED: uncharacterized protein LOC101207989 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 1.8e-28
Identity = 64/95 (67.37%), Postives = 70/95 (73.68%), Query Frame = 1


Query: 107 TKIKRRKKNLFEVVQFLPNWGVGYH--------------------SGTHGKAWGVAHKDG 166
           TK +++KKNLFEVVQFLPNWGVGYH                    SGTHGKAWG+AHK+G
Sbjct: 47  TKRRKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNG 106

Query: 167 TPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSAE 182
           TPI EAPKKISGVHKRCWKYIASLP SG+S  SAE
Sbjct: 107 TPIVEAPKKISGVHKRCWKYIASLPHSGESKTSAE 141

[Close]

BLAST of CmaCh20G003730 vs. NCBI nr
Match: gi|659128154|ref|XP_008464074.1| (PREDICTED: uncharacterized protein LOC103502049 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 5.6e-27
Identity = 61/95 (64.21%), Postives = 68/95 (71.58%), Query Frame = 1


Query: 107 TKIKRRKKNLFEVVQFLPNWGVGYH--------------------SGTHGKAWGVAHKDG 166
           TK +++KKNLFEV+QFLPNWGVGYH                    SGTHGKAWG+AHK+G
Sbjct: 47  TKRRKKKKNLFEVIQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNG 106

Query: 167 TPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSAE 182
            PI EAPKKISGVHKRCWKYIASLP  G+S  SAE
Sbjct: 107 MPIVEAPKKISGVHKRCWKYIASLPRLGESKTSAE 141

[Close]

BLAST of CmaCh20G003730 vs. NCBI nr
Match: gi|224104343|ref|XP_002313405.1| (hypothetical protein POPTR_0009s04490g [Populus trichocarpa])

HSP 1 Score: 113.2 bits (282), Expect = 5.5e-22
Identity = 53/91 (58.24%), Postives = 60/91 (65.93%), Query Frame = 1


Query: 110 KRRKKNLFEVVQFLPNWGVGYH--------------------SGTHGKAWGVAHKDGTPI 169
           +R+KKNLFEV QFLP WG+GYH                     G HGKAWG+AHKDG PI
Sbjct: 58  RRKKKNLFEVAQFLPQWGIGYHLAKSHWANVSYEITKINLYKDGRHGKAWGIAHKDGLPI 117

Query: 170 AEAPKKISGVHKRCWKYIASLPSSGDSDPSA 181
           A+APKKISGVHKRCWKYI SL  S +S  S+
Sbjct: 118 ADAPKKISGVHKRCWKYIPSLAKSIESKKSS 148

[Close]

BLAST of CmaCh20G003730 vs. NCBI nr
Match: gi|747040697|ref|XP_011093950.1| (PREDICTED: uncharacterized protein LOC105173744 [Sesamum indicum])

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 50/82 (60.98%), Postives = 56/82 (68.29%), Query Frame = 1


Query: 108 KIKRRKKNLFEVVQFLPNWGVGYH--------------------SGTHGKAWGVAHKDGT 167
           K KR+KKNLFEV QFLPNWG+GYH                     G HGKAWG+AHKDG 
Sbjct: 53  KPKRKKKNLFEVAQFLPNWGIGYHMAKTHWTGVSYEITKINLYKDGRHGKAWGIAHKDGV 112

Query: 168 PIAEAPKKISGVHKRCWKYIAS 170
           P+A+APKKISGVHKRCWKYI +
Sbjct: 113 PVADAPKKISGVHKRCWKYITN 134

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BLAST of CmaCh20G003730 vs. NCBI nr
Match: gi|728820072|gb|KHG03554.1| (28S ribosomal S34, mitochondrial [Gossypium arboreum])

HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 50/90 (55.56%), Postives = 58/90 (64.44%), Query Frame = 1


Query: 110 KRRKKNLFEVVQFLPNWGVGYH--------------------SGTHGKAWGVAHKDGTPI 169
           +++KKNLFEV QFLPNWG+GYH                     G HGKAWGV HKDG P 
Sbjct: 49  RKKKKNLFEVAQFLPNWGLGYHMAKTHWTDVSYQITKINLYKDGRHGKAWGVVHKDGAPT 108

Query: 170 AEAPKKISGVHKRCWKYIASLPSSGDSDPS 180
           A+APKKISGVHKRCW+YI  L   GD+ P+
Sbjct: 109 ADAPKKISGVHKRCWRYIPHLSKPGDTPPT 138

The following BLAST results are available for this feature:

BLAST of CmaCh20G003730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh20G003730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH76_CUCSA	1.2e-28	67.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188090 PE=4 SV=1	[more]
B9HP97_POPTR	3.8e-22	58.24	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s04490g PE=4 SV=1	[more]
A0A0B0MVM1_GOSAR	1.1e-21	55.56	28S ribosomal S34, mitochondrial OS=Gossypium arboreum GN=F383_27881 PE=4 SV=1	[more]
V4RU85_9ROSI	2.5e-21	56.18	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029469mg PE=4 SV=1	[more]
B9S383_RICCO	2.5e-21	54.95	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0731370 PE=4 SV=1	[more]

BLAST of CmaCh20G003730 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52370.1	1.4e-23	47.06	unknown protein	[more]
AT5G58990.1	2.4e-23	49.04	unknown protein	[more]

BLAST of CmaCh20G003730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449450774\|ref\|XP_004143137.1\|	1.8e-28	67.37	PREDICTED: uncharacterized protein LOC101207989 [Cucumis sativus]	[more]
gi\|659128154\|ref\|XP_008464074.1\|	5.6e-27	64.21	PREDICTED: uncharacterized protein LOC103502049 [Cucumis melo]	[more]
gi\|224104343\|ref\|XP_002313405.1\|	5.5e-22	58.24	hypothetical protein POPTR_0009s04490g [Populus trichocarpa]	[more]
gi\|747040697\|ref\|XP_011093950.1\|	1.2e-21	60.98	PREDICTED: uncharacterized protein LOC105173744 [Sesamum indicum]	[more]
gi\|728820072\|gb\|KHG03554.1\|	1.6e-21	55.56	28S ribosomal S34, mitochondrial [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G003730.1	CmaCh20G003730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35316	FAMILY NOT NAMED	coord: 108..181 score: 9.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G003730	Cucsa.138990	Cucumber (Gy14) v1	cgycmaB0388
CmaCh20G003730	Cla013335	Watermelon (97103) v1	cmawmB524
CmaCh20G003730	Csa6G188090	Cucumber (Chinese Long) v2	cmacuB553
CmaCh20G003730	MELO3C025881	Melon (DHL92) v3.5.1	cmameB500
CmaCh20G003730	ClCG02G019810	Watermelon (Charleston Gray)	cmawcgB481
CmaCh20G003730	CSPI06G14120	Wild cucumber (PI 183967)	cmacpiB559
CmaCh20G003730	CmoCh02G007720	Cucurbita moschata (Rifu)	cmacmoB553
CmaCh20G003730	CmoCh20G004060	Cucurbita moschata (Rifu)	cmacmoB550
CmaCh20G003730	Lsi10G014070	Bottle gourd (USVL1VR-Ls)	cmalsiB506
CmaCh20G003730	Cp4.1LG16g06530	Cucurbita pepo (Zucchini)	cmacpeB564
CmaCh20G003730	Cp4.1LG05g09570	Cucurbita pepo (Zucchini)	cmacpeB584
CmaCh20G003730	MELO3C025881.2	Melon (DHL92) v3.6.1	cmamedB578
CmaCh20G003730	CsaV3_6G016530	Cucumber (Chinese Long) v3	cmacucB0665
CmaCh20G003730	Cla97C02G045820	Watermelon (97103) v2	cmawmbB568
CmaCh20G003730	Bhi10G000602	Wax gourd	cmawgoB0692
CmaCh20G003730	CsGy6G013990	Cucumber (Gy14) v2	cgybcmaB789
CmaCh20G003730	Carg26594	Silver-seed gourd	carcmaB1256
CmaCh20G003730	Carg03342	Silver-seed gourd	carcmaB0473

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh20G003730	CmaCh02G007710	Cucurbita maxima (Rimu)	cmacmaB468

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G003730	Cucurbita pepo (Zucchini)	cmacpeB571
CmaCh20G003730	Cucurbita pepo (Zucchini)	cmacpeB593
CmaCh20G003730	Silver-seed gourd	carcmaB0207
CmaCh20G003730	Silver-seed gourd	carcmaB1383
CmaCh20G003730	Cucurbita maxima (Rimu)	cmacmaB490
CmaCh20G003730	Cucurbita moschata (Rifu)	cmacmoB568