CmaCh20G001860 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G001860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr20 : 901307 .. 902653 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTTGGAAGAAGGAGACGAAGCGGCTGATCGGAAGTTGTATCCCTGTAAAACTCTGAACATGAATTCAAGTCCCCTCTGTAACCGTTCGAATCAGGTAGGCTATTCTCGCACAGGTCATTATATTCCTCGTGAATGTTCTAAAGCTCAAATGTGCCTTCAAAAGATTTTGTACATAATTTCGTCTGTTCCTCGCCAAGAATCGTGCGCGGATTTGCAAATCGGAAAATTAGACCTCAATAGGAACGTAAGCGGTGGAGGAGGGTTTCGTACTGATTTTAATCTGAGATTTGGCGCGTTTACGGAGGAAGAAGACCAGGAATCAGTGGCTTTTGTGGAGAATCGCGAAGGCGGCGGTGGAAGTGGTTCGGTAGACGCGGTGCCTGTTACTGGTTCCGCAACAGAGAAGTGCTCGGTCGGCGATGGCGAGAACGCGAAATGCTCTGAATCCCCTGTCGCTGAGACTGAGAAATATGAAGTCGAAGAACACGCGATGGAAATTCCAGAACGTTCGCAGATCGCCGAATTTCACACTCAAAGAGGCGATGCTGAAAACATCAGATTAGATGAAAACAAAAGCGAAAAGACAGTCGAAGAAGAAGAAGGTAAAGAGCTTAAACCCACGGGGAGTTCCGTTGATCGAAGCGACGATATGAAAGCCGAAACAGTGCCGTTTAGAGGAGCGAAATGCCAGAGCGGTGGCGATTGTCTAGGTTTGCTCATCGAAGCGGCGAGACTGATATTTGGAGACATTGGTGAGAACGAATTCGACACTGAGTCAACTCAAGAAGAAAATGAGTCTAACAGCGAGTTAGACATCAAAGATCCGAGTCAACTCGAGAAAGTAATTTCTGAATCGCATTCAAGCGAGCCAAAGAGGAAGCTCGAAGGAAATTGGATGGTGATGAATTTAGTGAGAGATATCGACGACAGGTCTCCACTGGTGAGGTCAAAGAGAGGAAGAAGCCAGGTCTTGCCATGTCGTTATAAAGACTCAGTTCTGGAGCCATGGCGATCCCAACCATTGTCGAGCAAGGTCAAGGTCTCAAGAAGACAACGGCGATCGAGGTATCGCACGTAGATCAGTAAACATTGATAATCTTTTACATCTTCATTAGCAACAAGTAATTTGCCCACCTGTGGATTATGTATATAGCCGCAGGTCCACAACCACCAAGTAATTATAAACATAATGCAAAGTGTTATTGTTGCTTTTCTTCTGGTTGCTGCTGAAATTGCTTCTGCAAACATGGCAGAAGCTGAAACTGCAGAGGACACGAGAAGACTGACAGAGGATCCACCATTAATGGCGACTGTACAGTGCAGGGTAAGAGCGCAGAACTGA

mRNA sequence

ATGCTTTTGGAAGAAGGAGACGAAGCGGCTGATCGGAAGTTGTATCCCTGTAAAACTCTGAACATGAATTCAAGTCCCCTCTGTAACCGTTCGAATCAGGTAGGCTATTCTCGCACAGGTCATTATATTCCTCGTGAATGTTCTAAAGCTCAAATGTGCCTTCAAAAGATTTTGTACATAATTTCGTCTGTTCCTCGCCAAGAATCGTGCGCGGATTTGCAAATCGGAAAATTAGACCTCAATAGGAACGTAAGCGGTGGAGGAGGGTTTCGTACTGATTTTAATCTGAGATTTGGCGCGTTTACGGAGGAAGAAGACCAGGAATCAGTGGCTTTTGTGGAGAATCGCGAAGGCGGCGGTGGAAGTGGTTCGGTAGACGCGGTGCCTGTTACTGGTTCCGCAACAGAGAAGTGCTCGGTCGGCGATGGCGAGAACGCGAAATGCTCTGAATCCCCTGTCGCTGAGACTGAGAAATATGAAGTCGAAGAACACGCGATGGAAATTCCAGAACGTTCGCAGATCGCCGAATTTCACACTCAAAGAGGCGATGCTGAAAACATCAGATTAGATGAAAACAAAAGCGAAAAGACAGTCGAAGAAGAAGAAGGTAAAGAGCTTAAACCCACGGGGAGTTCCGTTGATCGAAGCGACGATATGAAAGCCGAAACAGTGCCGTTTAGAGGAGCGAAATGCCAGAGCGGTGGCGATTGTCTAGGTTTGCTCATCGAAGCGGCGAGACTGATATTTGGAGACATTGGTGAGAACGAATTCGACACTGAGTCAACTCAAGAAGAAAATGAGTCTAACAGCGAGTTAGACATCAAAGATCCGAGTCAACTCGAGAAAGTAATTTCTGAATCGCATTCAAGCGAGCCAAAGAGGAAGCTCGAAGGAAATTGGATGGTGATGAATTTAGTGAGAGATATCGACGACAGGTCTCCACTGTTCTGGAGCCATGGCGATCCCAACCATTGTCGAGCAAGGTCAAGGTCTCAAGAAGACAACGGCGATCGAGAAGCTGAAACTGCAGAGGACACGAGAAGACTGACAGAGGATCCACCATTAATGGCGACTGTACAGTGCAGGGTAAGAGCGCAGAACTGA

Coding sequence (CDS)

ATGCTTTTGGAAGAAGGAGACGAAGCGGCTGATCGGAAGTTGTATCCCTGTAAAACTCTGAACATGAATTCAAGTCCCCTCTGTAACCGTTCGAATCAGGTAGGCTATTCTCGCACAGGTCATTATATTCCTCGTGAATGTTCTAAAGCTCAAATGTGCCTTCAAAAGATTTTGTACATAATTTCGTCTGTTCCTCGCCAAGAATCGTGCGCGGATTTGCAAATCGGAAAATTAGACCTCAATAGGAACGTAAGCGGTGGAGGAGGGTTTCGTACTGATTTTAATCTGAGATTTGGCGCGTTTACGGAGGAAGAAGACCAGGAATCAGTGGCTTTTGTGGAGAATCGCGAAGGCGGCGGTGGAAGTGGTTCGGTAGACGCGGTGCCTGTTACTGGTTCCGCAACAGAGAAGTGCTCGGTCGGCGATGGCGAGAACGCGAAATGCTCTGAATCCCCTGTCGCTGAGACTGAGAAATATGAAGTCGAAGAACACGCGATGGAAATTCCAGAACGTTCGCAGATCGCCGAATTTCACACTCAAAGAGGCGATGCTGAAAACATCAGATTAGATGAAAACAAAAGCGAAAAGACAGTCGAAGAAGAAGAAGGTAAAGAGCTTAAACCCACGGGGAGTTCCGTTGATCGAAGCGACGATATGAAAGCCGAAACAGTGCCGTTTAGAGGAGCGAAATGCCAGAGCGGTGGCGATTGTCTAGGTTTGCTCATCGAAGCGGCGAGACTGATATTTGGAGACATTGGTGAGAACGAATTCGACACTGAGTCAACTCAAGAAGAAAATGAGTCTAACAGCGAGTTAGACATCAAAGATCCGAGTCAACTCGAGAAAGTAATTTCTGAATCGCATTCAAGCGAGCCAAAGAGGAAGCTCGAAGGAAATTGGATGGTGATGAATTTAGTGAGAGATATCGACGACAGGTCTCCACTGTTCTGGAGCCATGGCGATCCCAACCATTGTCGAGCAAGGTCAAGGTCTCAAGAAGACAACGGCGATCGAGAAGCTGAAACTGCAGAGGACACGAGAAGACTGACAGAGGATCCACCATTAATGGCGACTGTACAGTGCAGGGTAAGAGCGCAGAACTGA

Protein sequence

MLLEEGDEAADRKLYPCKTLNMNSSPLCNRSNQVGYSRTGHYIPRECSKAQMCLQKILYIISSVPRQESCADLQIGKLDLNRNVSGGGGFRTDFNLRFGAFTEEEDQESVAFVENREGGGGSGSVDAVPVTGSATEKCSVGDGENAKCSESPVAETEKYEVEEHAMEIPERSQIAEFHTQRGDAENIRLDENKSEKTVEEEEGKELKPTGSSVDRSDDMKAETVPFRGAKCQSGGDCLGLLIEAARLIFGDIGENEFDTESTQEENESNSELDIKDPSQLEKVISESHSSEPKRKLEGNWMVMNLVRDIDDRSPLFWSHGDPNHCRARSRSQEDNGDREAETAEDTRRLTEDPPLMATVQCRVRAQN

Homology

[Close]

BLAST of CmaCh20G001860 vs. TrEMBL
Match: A0A0A0KGN1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G151090 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.7e-94
Identity = 208/300 (69.33%), Postives = 228/300 (76.00%), Query Frame = 1


Query: 22  MNSSPLCNRSNQVGYSRTGHYIPRECSKAQMCLQKILYIISSVPRQESCADLQIGKLDLN 81
           MNS+PL  RSNQV YSR+G+YI RECSKAQMCLQKIL+IISSVPRQE   D  IGKL+L+
Sbjct: 1   MNSTPLPYRSNQVDYSRSGYYISRECSKAQMCLQKILHIISSVPRQEPRVDSTIGKLELD 60

Query: 82  RNVSGGGGFRTDFNLRFGAFTEEEDQESVAFVENREGGGGSGSVDAVPVTGSATEKCSVG 141
            NVSGGGGFRTDFNLR GAFT  EDQE V FVE+   GGG+GSVD       ATEKCS G
Sbjct: 61  GNVSGGGGFRTDFNLRIGAFTVNEDQELVGFVESGGSGGGNGSVD-------ATEKCSYG 120

Query: 142 D--GENAKCSESPVAETEKYEVEEHAMEIPERSQIAEFHTQRGDAENIRLDENKSEKTV- 201
           D  GE AKCSE    ET K +VE H  EIPE S+I         AE+ R DEN+SEKTV 
Sbjct: 121 DGNGEGAKCSEPLGNETGKCDVEGHEREIPEHSKI---------AESSRFDENESEKTVV 180

Query: 202 -EEEEGKELKPTGSSVDRSDDMKAETVPFRGAKCQSGGDCLGLLIEAARLIFGDIGENEF 261
            EE+E    K T SSVDR DD + E  PF G KC+S GDCLGLLIEAARLIFGDI E+EF
Sbjct: 181 EEEKESNWNKLTASSVDRRDDGEGEMAPFNGPKCKSSGDCLGLLIEAARLIFGDISEDEF 240

Query: 262 DTESTQEENESNSELDIKDPSQLEKVISESHSSEPKR-KLE-GNWMVMNLVRDIDDRSPL 316
           DTE TQEE+E N+ELDIKDPSQLEKV+SESHSSE KR KLE GNWMVMN+VRDIDDRSPL
Sbjct: 241 DTELTQEESELNNELDIKDPSQLEKVMSESHSSESKRMKLERGNWMVMNIVRDIDDRSPL 284

[Close]

BLAST of CmaCh20G001860 vs. NCBI nr
Match: gi|659117478|ref|XP_008458621.1| (PREDICTED: uncharacterized protein LOC103497968 [Cucumis melo])

HSP 1 Score: 379.4 bits (973), Expect = 7.1e-102
Identity = 218/300 (72.67%), Postives = 238/300 (79.33%), Query Frame = 1


Query: 22  MNSSPLCNRSNQVGYSRTGHYI-PRECSKAQMCLQKILYIISSVPRQESCADLQIGKLDL 81
           MNS+PL  RSNQV YSR+G+YI PRECSKAQMCLQKIL+IISSVPRQE C D +IGKLDL
Sbjct: 1   MNSTPLSYRSNQVDYSRSGYYIIPRECSKAQMCLQKILHIISSVPRQEPCVDSKIGKLDL 60

Query: 82  NRNVSGGGGFRTDFNLRFGAFTEEEDQESVAFVENREGGGGSGSVDAVPVTGSATEKCSV 141
           + NVSGGGGFRTDFNLRFGAF  +EDQE V FVEN   GGG+GSVDA       TEKCS 
Sbjct: 61  DGNVSGGGGFRTDFNLRFGAFMVDEDQELVGFVENGGSGGGNGSVDA-------TEKCSY 120

Query: 142 GDG--ENAKCSESPVAETEKYEVEEHAMEIPERSQIAEFHTQRGDAENIRLDENKSEKTV 201
           GDG  E AKCSES V ET KY+V+ H  EIPE S+IAE         + R +EN+SEKTV
Sbjct: 121 GDGNGEGAKCSESLVNETGKYDVDGHVREIPEHSKIAE---------SSRFNENESEKTV 180

Query: 202 -EEEEGKELKPTGSSVDRSDDMKAETVPFRGAKCQSGGDCLGLLIEAARLIFGDIGENEF 261
            EEE+    K T SSVDR DD +AET PF GAKC+S GDCLGLLIEAARLIFGDI ENEF
Sbjct: 181 VEEEQSNSNKLTASSVDRRDDDEAETAPFNGAKCKSSGDCLGLLIEAARLIFGDISENEF 240

Query: 262 DTESTQEENESNSELDIKDPSQLEKVISESHSSEPKR-KLE-GNWMVMNLVRDIDDRSPL 316
           DTE TQEE+E N+ELDIKDPSQLEKVISESHSSE KR KLE GNWMVMN+VRDIDDRSPL
Sbjct: 241 DTELTQEESELNNELDIKDPSQLEKVISESHSSESKRMKLERGNWMVMNIVRDIDDRSPL 284

[Close]

BLAST of CmaCh20G001860 vs. NCBI nr
Match: gi|778713507|ref|XP_011657056.1| (PREDICTED: uncharacterized protein LOC105435800 [Cucumis sativus])

HSP 1 Score: 354.4 bits (908), Expect = 2.4e-94
Identity = 208/300 (69.33%), Postives = 228/300 (76.00%), Query Frame = 1


Query: 22  MNSSPLCNRSNQVGYSRTGHYIPRECSKAQMCLQKILYIISSVPRQESCADLQIGKLDLN 81
           MNS+PL  RSNQV YSR+G+YI RECSKAQMCLQKIL+IISSVPRQE   D  IGKL+L+
Sbjct: 1   MNSTPLPYRSNQVDYSRSGYYISRECSKAQMCLQKILHIISSVPRQEPRVDSTIGKLELD 60

Query: 82  RNVSGGGGFRTDFNLRFGAFTEEEDQESVAFVENREGGGGSGSVDAVPVTGSATEKCSVG 141
            NVSGGGGFRTDFNLR GAFT  EDQE V FVE+   GGG+GSVD       ATEKCS G
Sbjct: 61  GNVSGGGGFRTDFNLRIGAFTVNEDQELVGFVESGGSGGGNGSVD-------ATEKCSYG 120

Query: 142 D--GENAKCSESPVAETEKYEVEEHAMEIPERSQIAEFHTQRGDAENIRLDENKSEKTV- 201
           D  GE AKCSE    ET K +VE H  EIPE S+I         AE+ R DEN+SEKTV 
Sbjct: 121 DGNGEGAKCSEPLGNETGKCDVEGHEREIPEHSKI---------AESSRFDENESEKTVV 180

Query: 202 -EEEEGKELKPTGSSVDRSDDMKAETVPFRGAKCQSGGDCLGLLIEAARLIFGDIGENEF 261
            EE+E    K T SSVDR DD + E  PF G KC+S GDCLGLLIEAARLIFGDI E+EF
Sbjct: 181 EEEKESNWNKLTASSVDRRDDGEGEMAPFNGPKCKSSGDCLGLLIEAARLIFGDISEDEF 240

Query: 262 DTESTQEENESNSELDIKDPSQLEKVISESHSSEPKR-KLE-GNWMVMNLVRDIDDRSPL 316
           DTE TQEE+E N+ELDIKDPSQLEKV+SESHSSE KR KLE GNWMVMN+VRDIDDRSPL
Sbjct: 241 DTELTQEESELNNELDIKDPSQLEKVMSESHSSESKRMKLERGNWMVMNIVRDIDDRSPL 284

The following BLAST results are available for this feature:

BLAST of CmaCh20G001860 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh20G001860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGN1_CUCSA	1.7e-94	69.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G151090 PE=4 SV=1	[more]

BLAST of CmaCh20G001860 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh20G001860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659117478\|ref\|XP_008458621.1\|	7.1e-102	72.67	PREDICTED: uncharacterized protein LOC103497968 [Cucumis melo]	[more]
gi\|778713507\|ref\|XP_011657056.1\|	2.4e-94	69.33	PREDICTED: uncharacterized protein LOC105435800 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G001860.1	CmaCh20G001860.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G001860	Cucsa.385360	Cucumber (Gy14) v1	cgycmaB1064
CmaCh20G001860	Cla008670	Watermelon (97103) v1	cmawmB531
CmaCh20G001860	Csa6G151090	Cucumber (Chinese Long) v2	cmacuB565
CmaCh20G001860	MELO3C021450	Melon (DHL92) v3.5.1	cmameB504
CmaCh20G001860	ClCG02G021920	Watermelon (Charleston Gray)	cmawcgB489
CmaCh20G001860	CSPI06G12280	Wild cucumber (PI 183967)	cmacpiB572
CmaCh20G001860	CmoCh20G002060	Cucurbita moschata (Rifu)	cmacmoB550
CmaCh20G001860	Lsi10G011900	Bottle gourd (USVL1VR-Ls)	cmalsiB500
CmaCh20G001860	Cp4.1LG16g07860	Cucurbita pepo (Zucchini)	cmacpeB564
CmaCh20G001860	MELO3C021450.2	Melon (DHL92) v3.6.1	cmamedB581
CmaCh20G001860	CsaV3_6G014740	Cucumber (Chinese Long) v3	cmacucB0679
CmaCh20G001860	Cla97C02G047980	Watermelon (97103) v2	cmawmbB577
CmaCh20G001860	CsGy6G012330	Cucumber (Gy14) v2	cgybcmaB802
CmaCh20G001860	Carg18443	Silver-seed gourd	carcmaB0575

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None