CmaCh20G001320 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G001320
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Nuclear transcription factor Y subunit C-4, putative
Location	Cma_Chr20 : 622669 .. 623223 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCGATCTCTGTTTCTGGCTGTGATTTTCCTCTTGATTCCTCACATTGGTCCCGTATTCAACGACAAAGGAAAATTCCTCTCGTTCGATTCCAAAAAGCCTCACTCTATGACCAAACGAGAATTCTTCGACTTAATCGACGAATTGAAAACCGCCGAAATTCTCATGAAGGATAAACAGAGCCTTGTGTTGATTGCAGGATCCAATTCAAACACCGAGGCTGCGGATCATTATGCCGATTATCTGAGAAGAATGGGAGCCGATGTAGTAATAGAGAACTATTTGCCGCGATTCTCCTCTGAGAACGAATCGTTTGATATCGTGTTCACGCTAGGGCAACTCGGAGCAAGATTTGTTGACCGTGTTCTTAAAAGCGGCGGCGCAGTGGTTGTTCCGGCGAATGATATGTCTCTAAATGTGTACCTCGATGAATTGAAATATACGTGCGTTTACTTAAAGCCTTACAGTCTTGAATCGATCATCATCGTGGTGGTGAAACCAAGTCCGCCTCATCAATTAGATGCCGGCGAGTTACGCCGGCGGCCACATTGA

mRNA sequence

ATGTCTCGATCTCTGTTTCTGGCTGTGATTTTCCTCTTGATTCCTCACATTGGTCCCGTATTCAACGACAAAGGAAAATTCCTCTCGTTCGATTCCAAAAAGCCTCACTCTATGACCAAACGAGAATTCTTCGACTTAATCGACGAATTGAAAACCGCCGAAATTCTCATGAAGGATAAACAGAGCCTTGTGTTGATTGCAGGATCCAATTCAAACACCGAGGCTGCGGATCATTATGCCGATTATCTGAGAAGAATGGGAGCCGATGTAGTAATAGAGAACTATTTGCCGCGATTCTCCTCTGAGAACGAATCGTTTGATATCGTGTTCACGCTAGGGCAACTCGGAGCAAGATTTGTTGACCGTGTTCTTAAAAGCGGCGGCGCAGTGGTTGTTCCGGCGAATGATATGTCTCTAAATGTGTACCTCGATGAATTGAAATATACGTGCGTTTACTTAAAGCCTTACAGTCTTGAATCGATCATCATCGTGGTGGTGAAACCAAGTCCGCCTCATCAATTAGATGCCGGCGAGTTACGCCGGCGGCCACATTGA

Coding sequence (CDS)

ATGTCTCGATCTCTGTTTCTGGCTGTGATTTTCCTCTTGATTCCTCACATTGGTCCCGTATTCAACGACAAAGGAAAATTCCTCTCGTTCGATTCCAAAAAGCCTCACTCTATGACCAAACGAGAATTCTTCGACTTAATCGACGAATTGAAAACCGCCGAAATTCTCATGAAGGATAAACAGAGCCTTGTGTTGATTGCAGGATCCAATTCAAACACCGAGGCTGCGGATCATTATGCCGATTATCTGAGAAGAATGGGAGCCGATGTAGTAATAGAGAACTATTTGCCGCGATTCTCCTCTGAGAACGAATCGTTTGATATCGTGTTCACGCTAGGGCAACTCGGAGCAAGATTTGTTGACCGTGTTCTTAAAAGCGGCGGCGCAGTGGTTGTTCCGGCGAATGATATGTCTCTAAATGTGTACCTCGATGAATTGAAATATACGTGCGTTTACTTAAAGCCTTACAGTCTTGAATCGATCATCATCGTGGTGGTGAAACCAAGTCCGCCTCATCAATTAGATGCCGGCGAGTTACGCCGGCGGCCACATTGA

Protein sequence

MSRSLFLAVIFLLIPHIGPVFNDKGKFLSFDSKKPHSMTKREFFDLIDELKTAEILMKDKQSLVLIAGSNSNTEAADHYADYLRRMGADVVIENYLPRFSSENESFDIVFTLGQLGARFVDRVLKSGGAVVVPANDMSLNVYLDELKYTCVYLKPYSLESIIIVVVKPSPPHQLDAGELRRRPH

Homology

[Close]

BLAST of CmaCh20G001320 vs. TrEMBL
Match: A0A0A0KJZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G427990 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 9.8e-59
Identity = 128/190 (67.37%), Postives = 152/190 (80.00%), Query Frame = 1


Query: 1   MSRSLFLAVIFLLIPHIGPVFNDKGKFLSFDSKKPHSMTKREFFDLIDELKTAEILMKDK 60
           +SRSLF  VI +LIP I PVFND+GKF++FDSK P S+TK+EF DLIDELKTAEIL +DK
Sbjct: 33  ISRSLFFGVILILIPQITPVFNDQGKFITFDSKYPDSITKQEFHDLIDELKTAEILTEDK 92

Query: 61  QSLVLIAGSN--SNTEAADHYADYLRRMGADVVIEN-YLPRFSSENESFDIVFTLGQLGA 120
           +SLV I  S+  +  +A + YADYLRRMGADVVIEN +LP    ENE FDIVFT+GQ+GA
Sbjct: 93  ESLVFIPESSYLNTDDAPNDYADYLRRMGADVVIENSFLPGGLFENE-FDIVFTVGQIGA 152

Query: 121 RFVDRVLKSGGAVVVPANDMSLNVYLDELKYTCVYLKPYSLESIIIVVVKPSPPHQLDAG 180
           RFVDRVL+SGGAVV+PA D+S+NVYLDELKY CVYLK Y +E II+VV+KP    Q DAG
Sbjct: 153 RFVDRVLRSGGAVVLPATDISVNVYLDELKYRCVYLKAYRVERIIMVVMKPRASEQSDAG 212

Query: 181 EL---RRRPH 185
           E    RRRP+
Sbjct: 213 EKRGHRRRPN 221

[Close]

BLAST of CmaCh20G001320 vs. TrEMBL
Match: M5XEF9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007125mg PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-07
Identity = 53/178 (29.78%), Postives = 89/178 (50.00%), Query Frame = 1


Query: 1   MSRSLFLAVIFLLIPHIGPVFNDKGKFLSFDSKKPHSMTKREFFDLIDEL---KTAEILM 60
           +SRS+FL ++ L +P IG +       +S    K  + ++   F+ + +L      E L 
Sbjct: 44  ISRSVFLGLVILTLPCIGSLLRG----VSVSELKYDTQSEIFNFEQLGQLFHDLAGEGLR 103

Query: 61  KDKQSLVLIAGSNSNTEAADHYADYLRRMGADVVIENYLPRFSSE-NESFDIVFTLGQLG 120
           +     ++++  N       H  DY      D+V+++ L R SS  +ES+D VF    + 
Sbjct: 104 RKSDKALIVSPVNVGMIHNLHPFDY---NVFDIVMDSDLERKSSFLDESWDFVFAFNLVD 163

Query: 121 ARFVDRVLKSGGAVVVPANDMSLNVYLDELKYTCVYLKPYSLESIIIVVVKPSPPHQL 175
           A+FVDR+LK GG V VP ++   N +  +  Y  VYL+ Y+  S  + + K SP + L
Sbjct: 164 AKFVDRILKIGGIVAVPLSNDPSNAFKPKPNYKIVYLRRYA--STFVAMRKTSPSYDL 212

[Close]

BLAST of CmaCh20G001320 vs. TrEMBL
Match: W9RID4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011169 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-06
Identity = 46/169 (27.22%), Postives = 78/169 (46.15%), Query Frame = 1


Query: 1   MSRSLFLAVIFLLIPHIGPVFNDKGKFLSFDSKKPHSMTKREFFDLIDELKTAEILMKDK 60
           +SRS+FLA++F+  P IG  F      +  ++K        +   LI +L    ++ K  
Sbjct: 118 ISRSVFLALVFITFPCIGS-FTRGSNGIESNTKYGVVFNHEQLDLLIHDLSEEGLIRKSD 177

Query: 61  QSLVLIAGSNSNTEAADHYADYLRRMGADVVIENYLPRFSSENESFDIVFTLG-QLGARF 120
           ++L++  G  S   +  ++      M  D  +E         +ESFD VF        +F
Sbjct: 178 KALIVSPGVKSVIHSVKNFGAKQIVMAMDSSLEGQAQSSLVFDESFDFVFASNLATDVKF 237

Query: 121 VDRVLKSGGAVVVP-ANDMSLNVYLDELKYTCVYLKPYSLESIIIVVVK 168
           VD V+K+GG V  P +ND    +  ++  Y  VYL+ YS   + +  +K
Sbjct: 238 VDHVVKTGGIVAFPLSNDEQATILPEKTDYKIVYLRRYSSTIVAMRKIK 285

[Close]

BLAST of CmaCh20G001320 vs. TrEMBL
Match: A0A068TM34_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014728001 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-06
Identity = 44/157 (28.03%), Postives = 76/157 (48.41%), Query Frame = 1


Query: 1   MSRSLFLAVIFLLIPHIGPVFNDKGKFLSFDSKKPHSMTKREFF-DLIDELKTAEILMKD 60
           +SRSLFLA+I L +P IG V          +S   +       F DL DE     ++ + 
Sbjct: 44  VSRSLFLAIILLTLPSIGSVLRSSSNASKVNSDLANFKILPVLFRDLADE----GLIKRG 103

Query: 61  KQSLVLIAGSNSNTEAADHYADYLRRMGADVVIENYLPRFSSENESFDIVFTLGQLGARF 120
           ++ L++ +  +   +  D  +D    + ++  +E+ +P     NE+FD VF+     A  
Sbjct: 104 QKGLIVGSSLDDLMKDLDFVSDSDNIVASETSLEDSIP-----NETFDFVFSFSFKNADS 163

Query: 121 VDRVLKSGGAVVVPANDMSLNVYLDELKYTCVYLKPY 157
           VDRVLK+GG V+   ++    +   +  Y  VYL+ +
Sbjct: 164 VDRVLKNGGIVITKLSNDPSRLMQRQSNYRIVYLRRF 191

[Close]

BLAST of CmaCh20G001320 vs. NCBI nr
Match: gi|778722330|ref|XP_011658464.1| (PREDICTED: uncharacterized protein LOC105436015 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 1.4e-58
Identity = 128/190 (67.37%), Postives = 152/190 (80.00%), Query Frame = 1


Query: 1   MSRSLFLAVIFLLIPHIGPVFNDKGKFLSFDSKKPHSMTKREFFDLIDELKTAEILMKDK 60
           +SRSLF  VI +LIP I PVFND+GKF++FDSK P S+TK+EF DLIDELKTAEIL +DK
Sbjct: 33  ISRSLFFGVILILIPQITPVFNDQGKFITFDSKYPDSITKQEFHDLIDELKTAEILTEDK 92

Query: 61  QSLVLIAGSN--SNTEAADHYADYLRRMGADVVIEN-YLPRFSSENESFDIVFTLGQLGA 120
           +SLV I  S+  +  +A + YADYLRRMGADVVIEN +LP    ENE FDIVFT+GQ+GA
Sbjct: 93  ESLVFIPESSYLNTDDAPNDYADYLRRMGADVVIENSFLPGGLFENE-FDIVFTVGQIGA 152

Query: 121 RFVDRVLKSGGAVVVPANDMSLNVYLDELKYTCVYLKPYSLESIIIVVVKPSPPHQLDAG 180
           RFVDRVL+SGGAVV+PA D+S+NVYLDELKY CVYLK Y +E II+VV+KP    Q DAG
Sbjct: 153 RFVDRVLRSGGAVVLPATDISVNVYLDELKYRCVYLKAYRVERIIMVVMKPRASEQSDAG 212

Query: 181 EL---RRRPH 185
           E    RRRP+
Sbjct: 213 EKRGHRRRPN 221

[Close]

BLAST of CmaCh20G001320 vs. NCBI nr
Match: gi|764567628|ref|XP_011462229.1| (PREDICTED: uncharacterized protein LOC105350910 [Fragaria vesca subsp. vesca])

HSP 1 Score: 66.2 bits (160), Expect = 6.6e-08
Identity = 57/185 (30.81%), Postives = 95/185 (51.35%), Query Frame = 1


Query: 1   MSRSLFLAVIFLLIPHIGPVFNDKGKFLS-FDSKKPHSMTKREFFDLI-DELKTAEILMK 60
           +SRS+FLA++ L +P I  +   KG  +S  ++   +   K E   L+ ++L    +  +
Sbjct: 39  VSRSVFLALVMLTLPCIKSII--KGVSVSELETSHGYETFKFEQLGLLFNDLAGEGLRGE 98

Query: 61  DKQSLVLIAGSNSNTEAAD--HYADYLRRMGADVVIENYLPRFSSENESFDIVFTLGQLG 120
             +SL++  GS     A D  +  D     G +VV+++   + S EN+S D VF    + 
Sbjct: 99  SDRSLIVSPGSVGIIHALDILNVVDN----GFEVVMDSER-KSSFENQSVDFVFAFDLVD 158

Query: 121 ARFVDRVLKSGGAVVVPANDMSLNVYLDELKYTCVYLKPYSLESIIIVVVKPSPPHQLDA 180
           A+FVDRVLK GG V VP ++   N +  +  Y  VYL+ YS   + +     +   QL++
Sbjct: 159 AKFVDRVLKVGGIVAVPLSNDPSNAFSKKSNYKIVYLRRYSSTFVAMRKTGAAGEQQLES 216

Query: 181 GELRR 182
            + RR
Sbjct: 219 PDRRR 216

[Close]

BLAST of CmaCh20G001320 vs. NCBI nr
Match: gi|596170862|ref|XP_007223120.1| (hypothetical protein PRUPE_ppa007125mg [Prunus persica])

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07
Identity = 53/178 (29.78%), Postives = 89/178 (50.00%), Query Frame = 1


Query: 1   MSRSLFLAVIFLLIPHIGPVFNDKGKFLSFDSKKPHSMTKREFFDLIDEL---KTAEILM 60
           +SRS+FL ++ L +P IG +       +S    K  + ++   F+ + +L      E L 
Sbjct: 44  ISRSVFLGLVILTLPCIGSLLRG----VSVSELKYDTQSEIFNFEQLGQLFHDLAGEGLR 103

Query: 61  KDKQSLVLIAGSNSNTEAADHYADYLRRMGADVVIENYLPRFSSE-NESFDIVFTLGQLG 120
           +     ++++  N       H  DY      D+V+++ L R SS  +ES+D VF    + 
Sbjct: 104 RKSDKALIVSPVNVGMIHNLHPFDY---NVFDIVMDSDLERKSSFLDESWDFVFAFNLVD 163

Query: 121 ARFVDRVLKSGGAVVVPANDMSLNVYLDELKYTCVYLKPYSLESIIIVVVKPSPPHQL 175
           A+FVDR+LK GG V VP ++   N +  +  Y  VYL+ Y+  S  + + K SP + L
Sbjct: 164 AKFVDRILKIGGIVAVPLSNDPSNAFKPKPNYKIVYLRRYA--STFVAMRKTSPSYDL 212

[Close]

BLAST of CmaCh20G001320 vs. NCBI nr
Match: gi|645233458|ref|XP_008223356.1| (PREDICTED: uncharacterized protein LOC103323165 [Prunus mume])

HSP 1 Score: 64.7 bits (156), Expect = 1.9e-07
Identity = 53/178 (29.78%), Postives = 88/178 (49.44%), Query Frame = 1


Query: 1   MSRSLFLAVIFLLIPHIGPVFNDKGKFLSFDSKKPHSMTKREFFDLIDEL---KTAEILM 60
           +SRS+FL ++ L +P IG +       +S    K  + ++   F+ + +L      E L 
Sbjct: 44  ISRSVFLGLVILTLPCIGSLLRG----VSVSELKYDTQSEIFNFEQLGQLFHDLAGEGLR 103

Query: 61  KDKQSLVLIAGSNSNTEAADHYADYLRRMGADVVIENYLPRFSSE-NESFDIVFTLGQLG 120
           +     ++++  N       H  DY      D+V+++ L R SS  +ES D VF    + 
Sbjct: 104 RKSDKALIVSPFNVGMIHNLHPFDY---NVFDIVMDSDLERKSSFLDESLDFVFAFNLVD 163

Query: 121 ARFVDRVLKSGGAVVVPANDMSLNVYLDELKYTCVYLKPYSLESIIIVVVKPSPPHQL 175
           A+FVDR+LK GG V VP ++   N +  +  Y  VYL+ Y+  S  + + K SP + L
Sbjct: 164 AKFVDRILKIGGIVAVPLSNDPSNAFRPKPNYKIVYLRRYA--STFVAMRKTSPSYDL 212

[Close]

BLAST of CmaCh20G001320 vs. NCBI nr
Match: gi|703110023|ref|XP_010099469.1| (hypothetical protein L484_011169 [Morus notabilis])

HSP 1 Score: 60.8 bits (146), Expect = 2.8e-06
Identity = 46/169 (27.22%), Postives = 78/169 (46.15%), Query Frame = 1


Query: 1   MSRSLFLAVIFLLIPHIGPVFNDKGKFLSFDSKKPHSMTKREFFDLIDELKTAEILMKDK 60
           +SRS+FLA++F+  P IG  F      +  ++K        +   LI +L    ++ K  
Sbjct: 118 ISRSVFLALVFITFPCIGS-FTRGSNGIESNTKYGVVFNHEQLDLLIHDLSEEGLIRKSD 177

Query: 61  QSLVLIAGSNSNTEAADHYADYLRRMGADVVIENYLPRFSSENESFDIVFTLG-QLGARF 120
           ++L++  G  S   +  ++      M  D  +E         +ESFD VF        +F
Sbjct: 178 KALIVSPGVKSVIHSVKNFGAKQIVMAMDSSLEGQAQSSLVFDESFDFVFASNLATDVKF 237

Query: 121 VDRVLKSGGAVVVP-ANDMSLNVYLDELKYTCVYLKPYSLESIIIVVVK 168
           VD V+K+GG V  P +ND    +  ++  Y  VYL+ YS   + +  +K
Sbjct: 238 VDHVVKTGGIVAFPLSNDEQATILPEKTDYKIVYLRRYSSTIVAMRKIK 285

The following BLAST results are available for this feature:

BLAST of CmaCh20G001320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh20G001320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJZ0_CUCSA	9.8e-59	67.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G427990 PE=4 SV=1	[more]
M5XEF9_PRUPE	1.0e-07	29.78	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007125mg PE=4 SV=1	[more]
W9RID4_9ROSA	1.9e-06	27.22	Uncharacterized protein OS=Morus notabilis GN=L484_011169 PE=4 SV=1	[more]
A0A068TM34_COFCA	3.3e-06	28.03	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014728001 PE=4 SV=1	[more]

BLAST of CmaCh20G001320 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh20G001320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778722330\|ref\|XP_011658464.1\|	1.4e-58	67.37	PREDICTED: uncharacterized protein LOC105436015 [Cucumis sativus]	[more]
gi\|764567628\|ref\|XP_011462229.1\|	6.6e-08	30.81	PREDICTED: uncharacterized protein LOC105350910 [Fragaria vesca subsp. vesca]	[more]
gi\|596170862\|ref\|XP_007223120.1\|	1.5e-07	29.78	hypothetical protein PRUPE_ppa007125mg [Prunus persica]	[more]
gi\|645233458\|ref\|XP_008223356.1\|	1.9e-07	29.78	PREDICTED: uncharacterized protein LOC103323165 [Prunus mume]	[more]
gi\|703110023\|ref\|XP_010099469.1\|	2.8e-06	27.22	hypothetical protein L484_011169 [Morus notabilis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G001320.1	CmaCh20G001320.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G001320	Cla008603	Watermelon (97103) v1	cmawmB531
CmaCh20G001320	Csa6G427990	Cucumber (Chinese Long) v2	cmacuB562
CmaCh20G001320	ClCG02G022590	Watermelon (Charleston Gray)	cmawcgB489
CmaCh20G001320	CSPI06G23570	Wild cucumber (PI 183967)	cmacpiB569
CmaCh20G001320	CsaV3_6G038700	Cucumber (Chinese Long) v3	cmacucB0676
CmaCh20G001320	Cla97C02G048660	Watermelon (97103) v2	cmawmbB577
CmaCh20G001320	Bhi10G000167	Wax gourd	cmawgoB0693

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G001320	Cucurbita maxima (Rimu)	cmacmaB470
CmaCh20G001320	Cucumber (Gy14) v1	cgycmaB0166
CmaCh20G001320	Cucurbita moschata (Rifu)	cmacmoB550
CmaCh20G001320	Cucurbita moschata (Rifu)	cmacmoB555
CmaCh20G001320	Melon (DHL92) v3.5.1	cmameB521
CmaCh20G001320	Cucurbita pepo (Zucchini)	cmacpeB564
CmaCh20G001320	Cucurbita pepo (Zucchini)	cmacpeB586
CmaCh20G001320	Bottle gourd (USVL1VR-Ls)	cmalsiB500
CmaCh20G001320	Cucumber (Gy14) v2	cgybcmaB799
CmaCh20G001320	Melon (DHL92) v3.6.1	cmamedB595
CmaCh20G001320	Melon (DHL92) v3.6.1	cmamedB598
CmaCh20G001320	Silver-seed gourd	carcmaB0575
CmaCh20G001320	Silver-seed gourd	carcmaB1267