CmaCh20G000070 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh20G000070
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCarboxyl-terminal peptidase
LocationCma_Chr20 : 17926 .. 18661 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATGCAACGTGGTCTGTGGCAATAAAATAAAAATACAAGAGACTGCTTTGTGTTCAGGGGCTGTGGTTTCAGCTTCAAGTTTGGCACAGGATTCCGCTTTCTTTAATCTTTTAGAAGCATGGCAACGGCAATGGCAATGGCCATGCTGCAGACTGAGGCTCTGTTTTCTCTTTCAGCTTCAGCTACATAGTTTAGATTTTGAAATCTTCTTTTTGTGACGTTGAAGCAGAGCCCAGGTGGGGATATCATCGACTGTGTCCACATTTCTAATCAACCACCTTTTGATCATCCTTTCCTCAAACATCACAAAATTCAGGTTTGTGATTCTCAGCTGTTGCAGCTATTTCAAGTATGTCCTGAAGTTCCTTCCCACTTGTCCTCTACAAGTGTTTTCAAAGTACAAGCAAGCAGCCAAGTATTGAAAACTAGAAAACGTTTTGTTTTTGGAATTTTATTAAGAATTCAAATCATAGCAAAGAAATTGGGAGAAAACAAACGCAATTCTCAAACGGGACCTTCAATTCCACATCTTAGATCTAACATATCAGAATGTATTTGCAGAGCGATGCATATCAAGCCACAGGTTGTTATAACCTCTTCCGCTCAGGCTTTATTCAAGTTAAAAGTGAAATAGCGATGGGGGCAAGCATCTCACCATTGTCTGGGTTTCGCAGTCCCCAGTACGATATCAGTATACTTATCTGGAAGGTAAATGCCAAACCTCACTACTAG

mRNA sequence

ATGCAATGCAACGTGAGCCCAGGTGGGGATATCATCGACTGTGTCCACATTTCTAATCAACCACCTTTTGATCATCCTTTCCTCAAACATCACAAAATTCAGGTTTGTGATTCTCAGCTGTTGCAGCTATTTCAAAGCGATGCATATCAAGCCACAGGTTGTTATAACCTCTTCCGCTCAGGCTTTATTCAAGTTAAAAGTGAAATAGCGATGGGGGCAAGCATCTCACCATTGTCTGGGTTTCGCAGTCCCCAGTACGATATCAGTATACTTATCTGGAAGGTAAATGCCAAACCTCACTACTAG

Coding sequence (CDS)

ATGCAATGCAACGTGAGCCCAGGTGGGGATATCATCGACTGTGTCCACATTTCTAATCAACCACCTTTTGATCATCCTTTCCTCAAACATCACAAAATTCAGGTTTGTGATTCTCAGCTGTTGCAGCTATTTCAAAGCGATGCATATCAAGCCACAGGTTGTTATAACCTCTTCCGCTCAGGCTTTATTCAAGTTAAAAGTGAAATAGCGATGGGGGCAAGCATCTCACCATTGTCTGGGTTTCGCAGTCCCCAGTACGATATCAGTATACTTATCTGGAAGGTAAATGCCAAACCTCACTACTAG

Protein sequence

MQCNVSPGGDIIDCVHISNQPPFDHPFLKHHKIQVCDSQLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWKVNAKPHY
Homology
[Close]
BLAST of CmaCh20G000070 vs. TrEMBL
Match: A0A0L9UDY1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g094200 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.4e-22
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = 1 

Query: 6   SPGGDIIDCVHISNQPPFDHPFLKHHKIQVCD---SQLLQLFQSDAYQATGCYNLFRS-G 65
           SP GDIIDCVH+S+QP  DHP LK+HKIQV           + SDAY+ATGCYNL     
Sbjct: 280 SPDGDIIDCVHVSHQPALDHPNLKNHKIQVSRELYGDNNTYWTSDAYKATGCYNLLCCYD 339

Query: 66  FIQVKSEIAMGASISPLSGFRSPQYDISILIWKVNA 98
           FIQ+ S+IA+GASISPLS + S QY ISIL+WK +A
Sbjct: 340 FIQINSDIALGASISPLSKYSSSQYHISILVWKEDA 375

[Close]
BLAST of CmaCh20G000070 vs. TrEMBL
Match: A0A0J8FEQ0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g070910 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.7e-17
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 1 

Query: 37  DSQLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWKVN 96
           +++L   + SDAYQATGCYNL  SGFIQ+ SEIAMGASISP+SGFRS QYDISIL+WK  
Sbjct: 243 NTRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSGFRSSQYDISILVWKDP 302

Query: 97  AKPHY 102
            + H+
Sbjct: 303 KEGHW 307

[Close]
BLAST of CmaCh20G000070 vs. TrEMBL
Match: A0A0K9RBF4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_085420 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-16
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 1 

Query: 37  DSQLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWK 95
           +++L   + SDAYQATGCYNL  SGFIQ+ SEIAMGASISP+SGFRS QYDISIL+WK
Sbjct: 243 NTRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSGFRSSQYDISILVWK 300

[Close]
BLAST of CmaCh20G000070 vs. TrEMBL
Match: A0A087GBH0_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G353400 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-16
Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 1 

Query: 37  DSQLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWKVN 96
           +++L   + SDAYQATGCYNL  SGFIQ+ S+IAMGASISP+SGF +PQYDISI IWK  
Sbjct: 240 NTRLFTYWTSDAYQATGCYNLLCSGFIQINSQIAMGASISPVSGFHNPQYDISITIWKDQ 299

Query: 97  AKPHY 102
            + H+
Sbjct: 300 KEGHW 304

[Close]
BLAST of CmaCh20G000070 vs. TrEMBL
Match: A0A0A0KWZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268070 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-16
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 1 

Query: 37  DSQLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWKVN 96
           +++L   + SDAYQATGCYNL  SGFIQV S+IAMGASISP+SGFR+ QYDISILIWK  
Sbjct: 238 NTRLFTYWTSDAYQATGCYNLLCSGFIQVSSDIAMGASISPVSGFRNSQYDISILIWKDP 297

Query: 97  AKPHY 102
            + H+
Sbjct: 298 NEGHW 302

[Close]
BLAST of CmaCh20G000070 vs. TAIR10
Match: AT5G56530.1 (AT5G56530.1 Protein of Unknown Function (DUF239))

HSP 1 Score: 92.0 bits (227), Expect = 2.2e-19
Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 1 

Query: 37  DSQLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWKVN 96
           +++L   + SDAYQATGCYNL  SGFIQ+ S+IAMGASISP+SGF +PQYDISI IWK  
Sbjct: 238 NTRLFTYWTSDAYQATGCYNLLCSGFIQINSQIAMGASISPVSGFHNPQYDISITIWKDP 297

Query: 97  AKPHY 102
            + H+
Sbjct: 298 KEGHW 302

[Close]
BLAST of CmaCh20G000070 vs. TAIR10
Match: AT1G55360.1 (AT1G55360.1 Protein of Unknown Function (DUF239))

HSP 1 Score: 91.7 bits (226), Expect = 2.9e-19
Identity = 42/65 (64.62%), Postives = 53/65 (81.54%), Query Frame = 1 

Query: 37  DSQLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWKVN 96
           +++L   + SDAYQATGCYNL  SGFIQ+ S+IAMGASISP+SG+R+ QYDISILIWK  
Sbjct: 240 NTRLFTYWTSDAYQATGCYNLLCSGFIQINSDIAMGASISPVSGYRNSQYDISILIWKDP 299

Query: 97  AKPHY 102
            + H+
Sbjct: 300 KEGHW 304

[Close]
BLAST of CmaCh20G000070 vs. TAIR10
Match: AT3G13510.1 (AT3G13510.1 Protein of Unknown Function (DUF239))

HSP 1 Score: 91.7 bits (226), Expect = 2.9e-19
Identity = 42/65 (64.62%), Postives = 53/65 (81.54%), Query Frame = 1 

Query: 37  DSQLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWKVN 96
           +++L   + SDAYQATGCYNL  SGFIQ+ S+IAMGASISP+SG+R+ QYDISILIWK  
Sbjct: 237 NTRLFTYWTSDAYQATGCYNLLCSGFIQINSDIAMGASISPVSGYRNSQYDISILIWKDP 296

Query: 97  AKPHY 102
            + H+
Sbjct: 297 KEGHW 301

[Close]
BLAST of CmaCh20G000070 vs. TAIR10
Match: AT2G44210.2 (AT2G44210.2 Protein of Unknown Function (DUF239))

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-16
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 1 

Query: 38  SQLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWKVNA 97
           ++L   + SDAYQ TGCYNL  SGF+Q+  EIAMG SISPLS + + QYDI+ILIWK   
Sbjct: 263 TRLFTYWTSDAYQGTGCYNLLCSGFVQINREIAMGGSISPLSNYGNSQYDITILIWKDPK 322

Query: 98  KPHY 102
           + H+
Sbjct: 323 EGHW 326

[Close]
BLAST of CmaCh20G000070 vs. TAIR10
Match: AT5G18460.1 (AT5G18460.1 Protein of Unknown Function (DUF239))

HSP 1 Score: 77.0 bits (188), Expect = 7.3e-15
Identity = 35/56 (62.50%), Postives = 45/56 (80.36%), Query Frame = 1 

Query: 39  QLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWK 95
           +L   + SD+YQATGCYNL  SGFIQ  ++IA+GA+ISPLS F+  Q+DI+ILIWK
Sbjct: 250 RLFTYWTSDSYQATGCYNLLCSGFIQTNNKIAIGAAISPLSTFKGNQFDITILIWK 305

[Close]
BLAST of CmaCh20G000070 vs. NCBI nr
Match: gi|920697519|gb|KOM40744.1| (hypothetical protein LR48_Vigan04g094200 [Vigna angularis])

HSP 1 Score: 112.8 bits (281), Expect = 3.4e-22
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = 1 

Query: 6   SPGGDIIDCVHISNQPPFDHPFLKHHKIQVCD---SQLLQLFQSDAYQATGCYNLFRS-G 65
           SP GDIIDCVH+S+QP  DHP LK+HKIQV           + SDAY+ATGCYNL     
Sbjct: 280 SPDGDIIDCVHVSHQPALDHPNLKNHKIQVSRELYGDNNTYWTSDAYKATGCYNLLCCYD 339

Query: 66  FIQVKSEIAMGASISPLSGFRSPQYDISILIWKVNA 98
           FIQ+ S+IA+GASISPLS + S QY ISIL+WK +A
Sbjct: 340 FIQINSDIALGASISPLSKYSSSQYHISILVWKEDA 375

[Close]
BLAST of CmaCh20G000070 vs. NCBI nr
Match: gi|731325338|ref|XP_010673463.1| (PREDICTED: uncharacterized protein LOC104889836 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 94.7 bits (234), Expect = 9.6e-17
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 1 

Query: 37  DSQLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWKVN 96
           +++L   + SDAYQATGCYNL  SGFIQ+ SEIAMGASISP+SGFRS QYDISIL+WK  
Sbjct: 243 NTRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSGFRSSQYDISILVWKDP 302

Query: 97  AKPHY 102
            + H+
Sbjct: 303 KEGHW 307

[Close]
BLAST of CmaCh20G000070 vs. NCBI nr
Match: gi|659097935|ref|XP_008449889.1| (PREDICTED: uncharacterized protein LOC103491632 [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-16
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 1 

Query: 37  DSQLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWKVN 96
           +++L   + SDAYQATGCYNL  SGFIQV S+IAMGASISP+SGFRS QYDISILIWK  
Sbjct: 238 NTRLFTYWTSDAYQATGCYNLLCSGFIQVNSDIAMGASISPVSGFRSSQYDISILIWKDP 297

Query: 97  AKPHY 102
            + H+
Sbjct: 298 NEGHW 302

[Close]
BLAST of CmaCh20G000070 vs. NCBI nr
Match: gi|729331485|ref|XP_010536833.1| (PREDICTED: uncharacterized protein LOC104811722 [Tarenaya hassleriana])

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-16
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1 

Query: 37  DSQLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWKVN 96
           +++L   + SDAYQATGCYNL  SGFIQ+ SEIAMGASISP+SG  SPQYDISILIWK  
Sbjct: 245 NTRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSGLHSPQYDISILIWKDP 304

Query: 97  AKPHY 102
            + H+
Sbjct: 305 KEGHW 309

[Close]
BLAST of CmaCh20G000070 vs. NCBI nr
Match: gi|902211928|gb|KNA16831.1| (hypothetical protein SOVF_085420 [Spinacia oleracea])

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-16
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 1 

Query: 37  DSQLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWK 95
           +++L   + SDAYQATGCYNL  SGFIQ+ SEIAMGASISP+SGFRS QYDISIL+WK
Sbjct: 243 NTRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSGFRSSQYDISILVWK 300

The following BLAST results are available for this feature:
BLAST of CmaCh20G000070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh20G000070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0L9UDY1_PHAAN2.4e-2260.42Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g094200 PE=4 SV=1[more]
A0A0J8FEQ0_BETVU6.7e-1767.69Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g070910 PE=4 S... [more]
A0A0K9RBF4_SPIOL2.5e-1674.14Uncharacterized protein OS=Spinacia oleracea GN=SOVF_085420 PE=4 SV=1[more]
A0A087GBH0_ARAAL2.5e-1664.62Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G353400 PE=4 SV=1[more]
A0A0A0KWZ7_CUCSA2.5e-1667.69Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268070 PE=4 SV=1[more]
BLAST of CmaCh20G000070 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G56530.12.2e-1964.62 Protein of Unknown Function (DUF239)[more]
AT1G55360.12.9e-1964.62 Protein of Unknown Function (DUF239)[more]
AT3G13510.12.9e-1964.62 Protein of Unknown Function (DUF239)[more]
AT2G44210.22.3e-1657.81 Protein of Unknown Function (DUF239)[more]
AT5G18460.17.3e-1562.50 Protein of Unknown Function (DUF239)[more]
BLAST of CmaCh20G000070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|920697519|gb|KOM40744.1|3.4e-2260.42hypothetical protein LR48_Vigan04g094200 [Vigna angularis][more]
gi|731325338|ref|XP_010673463.1|9.6e-1767.69PREDICTED: uncharacterized protein LOC104889836 [Beta vulgaris subsp. vulgaris][more]
gi|659097935|ref|XP_008449889.1|1.6e-1669.23PREDICTED: uncharacterized protein LOC103491632 [Cucumis melo][more]
gi|729331485|ref|XP_010536833.1|1.6e-1667.69PREDICTED: uncharacterized protein LOC104811722 [Tarenaya hassleriana][more]
gi|902211928|gb|KNA16831.1|3.6e-1674.14hypothetical protein SOVF_085420 [Spinacia oleracea][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004314Neprosin
IPR025521Neprosin_propep
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016874 ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G000070.1CmaCh20G000070.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004314Domain of unknown function DUF239PFAMPF03080DUF239coord: 41..96
score: 9.7
IPR025521Domain of unknown function DUF4409PFAMPF14365DUF4409coord: 6..40
score: 3.0
NoneNo IPR availablePANTHERPTHR31589FAMILY NOT NAMEDcoord: 46..94
score: 5.7
NoneNo IPR availablePANTHERPTHR31589:SF24SUBFAMILY NOT NAMEDcoord: 46..94
score: 5.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh20G000070CmoCh02G012010Cucurbita moschata (Rifu)cmacmoB555
CmaCh20G000070Lsi10G009210Bottle gourd (USVL1VR-Ls)cmalsiB500
CmaCh20G000070Cp4.1LG18g00880Cucurbita pepo (Zucchini)cmacpeB567
CmaCh20G000070MELO3C014725.2Melon (DHL92) v3.6.1cmamedB598
CmaCh20G000070CsaV3_4G017520Cucumber (Chinese Long) v3cmacucB0662
CmaCh20G000070Cla97C02G050640Watermelon (97103) v2cmawmbB577
CmaCh20G000070Bhi10G000399Wax gourdcmawgoB0693
CmaCh20G000070CsGy4G011720Cucumber (Gy14) v2cgybcmaB523
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh20G000070CmaCh02G011680Cucurbita maxima (Rimu)cmacmaB470
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh20G000070Cucurbita moschata (Rifu)cmacmoB550
CmaCh20G000070Wild cucumber (PI 183967)cmacpiB554
CmaCh20G000070Cucumber (Chinese Long) v2cmacuB549
CmaCh20G000070Melon (DHL92) v3.5.1cmameB521
CmaCh20G000070Watermelon (Charleston Gray)cmawcgB489
CmaCh20G000070Watermelon (97103) v1cmawmB531
CmaCh20G000070Cucurbita pepo (Zucchini)cmacpeB564
CmaCh20G000070Cucurbita pepo (Zucchini)cmacpeB586
CmaCh20G000070Cucumber (Gy14) v1cgycmaB0423