CmaCh19G011000 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G011000
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNucleolar complex protein 3 like
LocationCma_Chr19 : 9110902 .. 9113325 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTATGCACCTGAAGATGGTGGGAACGAAGAGGCAATGGAAGAGGGCGGCGTAGATAATGGTATAGTGAAGTAAACTAAGCCAGAAAGGAGGGTAAAGCTGAAGAAAACTAAAAACCAGAGGATGTAACCAAAGCTGAAGAAGTTAAACCAACCCCACAAACAGCTGCGATTTCACTCTCCTCCTTTATAGCACTGTTGCATGAAATAATGTCAGTAGTTTTTTCATGAAAAAGATATGGAAATTAACTCAACTCGTGGGCTTGTTAAGCTGGTAGACAAGAAAACTCTTTGGCTTCGGCCTGCTTGTCTGACTAGCTCTTAATACAATAGGAAAATGTTCGTATAATATCCTATTCCTGGGGTTGTTTCAAGTTGAAAACCATCTTTCACTCAGTTGAAATTTGAAAAAAAGTGGCCACAAAAAGCCACGGCCACACTCACGTGGCTACTGAAAAAACCAAATACACGGAGCCAAAATTGCTAGTAATAAAAACAAAGGGAAGTTCCTGAAAGAATCATAACAAGTAACATTGGACTGTTCGTGGGGATATCCTTAACATAATTGTGCATTTCCTATCTGCCTACAGTATGGTCCAACATTTATGATCAAATGATATATTTGGATTGGCAGAAAACTCTGTAGTGGTGCTATCAAGTATTTATTTATCAATGAGGGAAAGCATGGTGGTGAAGCGACTATGGAGGCTGTCCGGTTGGTTGCTGATCAAGTGAAATTTCATGACTGCCAATTGCCTCCTGATTCCATCCAGGTTTGAATTCTCATTCTTACACCTTTTTTTTTAAGCATATGAGGCTCATGCTTTCTTATAGAAGTTTATGCCTTGATGCGAACATATTGAAGCTAAGTTTTTATTGCTCTTGTAGTTGTTAGAGAAGTAATACAGTCTATTTTCAAAATGTTAGACATCCACTTCTTTGATTCCCCTTTTTCTTGGGCTGTTTTTACTGCTCATGTTTTTTTTTTGTTTTTTTTTTTGTTTTCTTGGGCTGGTTTGATGACACAAGGATCAAATGTGCTTGAAGCCTAGTTATAGAAAAATGTGCTTGAAACCTATATCACGAGTGGTTTCCAGATATTAAATTATTTTTAATTTTCAATTGTTCATCCTAAGGCACGCGAATGGACTCATTTGTTGTTGAAATGGAACTTCGAGTGCAGTCTATTTCTTTGGGTTTAGGTTTTTTTTTCTCACAAAGTTTCCTGTTCGCAACTTTTACCACCGTTTCGTGCATCTAACATTTGACGAGGATCTGAGAAAAGAAGAAGAGCAAGATGAGCATAATAAAGTAAAGAACAAAAAACACAGGAAAACAAAAAATCATGAGGAATCAAGTCACTTGCAAGGGATGATGCAAGACAAAGTACGAGGACAAAGTTTACTGAAGAGGTGTTACTTTTGCCTATTCTTTTCTTTTTTTCCGTTTCTCAATTGATTTAGCATCTTTTTAGTTGGTAATGGATGAATGTTTGTGATGTTTCACATAGGTTGCTTCGGATTACAGGGCTGCTTCTCTTGCTCCAGATGTGATGAAGCAAAGAGAGATGCAGTCAGATACACTTTCTGCTGTATTTGAAACTTATTTCCGAATCTTAAGGCATACAATGGAGTTATTAAATGCTAGGTAAGTTATTATTATTTAGAGCTTGCGTGTTGTTTGTATTGCGTTTGTTTGTGTTTTCTTCAAAAAATTCAGTCTTACCATGAAGAAAATATGAAAAAAGATTGGTGTTTTACTTTTTCTGAAAAAGGGTACATAACTAAACAAGAGCATACCATACCATTAGTTTGTTTCAGTTCAGTTCCTTTTTTTTAAGCTTGATGCTAATGGGAAACTACTCTTAAAAGTTAAATCAATTTATCCTTGTATATACCCCAGATAGGGAGGATCCCTCTTTTAGCTCGAGTCTTTGACTGGATGTTGGTGTAGGGATACTGGGGTCTGCTTGAACTGTCCTTGAGCTTGAAAAGTTAAATTTAAATTTGATCACAGACATGTTGATTAATGAAGGCTTTGGTGTCTTTGTATTATTTGTCTTCATGGATTTTCAATTGTTTTTCAATGTATTTTTCTTCTGACGCAACTCAGACTGCTGAACCAAGTATCTTTCATTTATTATGAAGGCCTGAAGCAAATATTACTGCACCTACTACTAGCCCATCTGGATCCCATCCTCTGCTTGCTCCATGTTTGAATGGATTGGGGAAATCCTCCCATCTCATTGATTTAGATTTCATGGGAGATCTTATGAATTATCTAAAAAGCCTTGTTTCGGGTGGTGATAATTCTTCTGAGAAACAGTCACAATGTTTGACCGTTTCTGAGCGTCTTCAGTGTTTCTTGTCGCATTTAAAGTTATGAGGAAAAACCTTGATGCTATCAATGTTGATCTTCAGGA

mRNA sequence

ATGCAGTATGCACCTGAAGATGGTGGGAACGAAGAGGCAATGGAAGAGGGCGGCGTAGATAATGCTGCGATTTCACTCTCCTCCTTTATAGCACTGTTGCATGAAATAATAAAACTCTGTAGTGGTGCTATCAAGTATTTATTTATCAATGAGGGAAAGCATGGTGGTGAAGCGACTATGGAGGCTGTCCGGTTGGTTGCTGATCAAGTGAAATTTCATGACTGCCAATTGCCTCCTGATTCCATCCAGTCACTTGCAAGGGATGATGCAAGACAAAGTACGAGGACAAAGTTTACTGAAGAGGTTGCTTCGGATTACAGGGCTGCTTCTCTTGCTCCAGATGTGATGAAGCAAAGAGAGATGCAGTCAGATACACTTTCTGCTGTATTTGAAACTTATTTCCGAATCTTAAGGCATACAATGGAGTTATTAAATGCTAGGCCTGAAGCAAATATTACTGCACCTACTACTAGCCCATCTGGATCCCATCCTCTGCTTGCTCCATGTTTGAATGGATTGGGGAAATCCTCCCATCTCATTGATTTAGATTTCATGGGAGATCTTATGAATTATCTAAAAAGCCTTGTTTCGGGTGGTGATAATTCTTCTGAGAAACAGTCACAATGA

Coding sequence (CDS)

ATGCAGTATGCACCTGAAGATGGTGGGAACGAAGAGGCAATGGAAGAGGGCGGCGTAGATAATGCTGCGATTTCACTCTCCTCCTTTATAGCACTGTTGCATGAAATAATAAAACTCTGTAGTGGTGCTATCAAGTATTTATTTATCAATGAGGGAAAGCATGGTGGTGAAGCGACTATGGAGGCTGTCCGGTTGGTTGCTGATCAAGTGAAATTTCATGACTGCCAATTGCCTCCTGATTCCATCCAGTCACTTGCAAGGGATGATGCAAGACAAAGTACGAGGACAAAGTTTACTGAAGAGGTTGCTTCGGATTACAGGGCTGCTTCTCTTGCTCCAGATGTGATGAAGCAAAGAGAGATGCAGTCAGATACACTTTCTGCTGTATTTGAAACTTATTTCCGAATCTTAAGGCATACAATGGAGTTATTAAATGCTAGGCCTGAAGCAAATATTACTGCACCTACTACTAGCCCATCTGGATCCCATCCTCTGCTTGCTCCATGTTTGAATGGATTGGGGAAATCCTCCCATCTCATTGATTTAGATTTCATGGGAGATCTTATGAATTATCTAAAAAGCCTTGTTTCGGGTGGTGATAATTCTTCTGAGAAACAGTCACAATGA

Protein sequence

MQYAPEDGGNEEAMEEGGVDNAAISLSSFIALLHEIIKLCSGAIKYLFINEGKHGGEATMEAVRLVADQVKFHDCQLPPDSIQSLARDDARQSTRTKFTEEVASDYRAASLAPDVMKQREMQSDTLSAVFETYFRILRHTMELLNARPEANITAPTTSPSGSHPLLAPCLNGLGKSSHLIDLDFMGDLMNYLKSLVSGGDNSSEKQSQ
Homology
[Close]
BLAST of CmaCh19G011000 vs. Swiss-Prot
Match: NOC3L_HUMAN (Nucleolar complex protein 3 homolog OS=Homo sapiens GN=NOC3L PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.1e-06
Identity = 45/200 (22.50%), Postives = 88/200 (44.00%), Query Frame = 1 

Query: 36  IIKLCSGAIKYLFINEGKHGGEATMEAVRLVADQVKFHDCQLPPDSIQS-----LARDDA 95
           I ++C  A+K LF  +    G+A++  +++++  VK  + ++ P+ +++     +   + 
Sbjct: 377 ISEMCCEAVKKLFKQDKL--GQASLGVIKVISGFVKGRNYEVRPEMLKTFLCLRIKEVEV 436

Query: 96  RQSTRT-------------------------KFTEEVASDYRAASLAPDVMKQREMQSDT 155
           ++ T                           K  E++  + R A  +    K+ ++ ++T
Sbjct: 437 KKDTEDINKPKKFMTFKEKRKSLSRMQRKWKKAEEKLERELREAEASESTEKKLKLHTET 496

Query: 156 LSAVFETYFRILRHTMELLNARPEANITAPTTSPSGSHPLLAPCLNGLGKSSHLIDLDFM 206
           L+ VF TYFRIL+                         PLL   L GL K +HLI+++F 
Sbjct: 497 LNIVFVTYFRILKKAQR--------------------SPLLPAVLEGLAKFAHLINVEFF 554

[Close]
BLAST of CmaCh19G011000 vs. Swiss-Prot
Match: NOC3L_PONAB (Nucleolar complex protein 3 homolog OS=Pongo abelii GN=NOC3L PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.0e-06
Identity = 45/197 (22.84%), Postives = 85/197 (43.15%), Query Frame = 1 

Query: 36  IIKLCSGAIKYLFINEGKHGGEATMEAVRLVADQVKFHDCQLPPDSIQS-----LARDDA 95
           I ++C  A+K LF  +    G+A++  +++++  VK    ++ P+ +++     +   + 
Sbjct: 377 ISEMCCEAVKKLFKQDKL--GQASLGVIKVISGFVKGRKYEVRPEMLKTFLCLRIKEVEV 436

Query: 96  RQSTRT-------------------------KFTEEVASDYRAASLAPDVMKQREMQSDT 155
           ++ T                           K  E++  + R A  +    K+ ++ ++T
Sbjct: 437 KKDTEDINKPKKFMTFKEKRKSLSRMQRKWKKAEEKLERELREAEASESTEKKLKLHTET 496

Query: 156 LSAVFETYFRILRHTMELLNARPEANITAPTTSPSGSHPLLAPCLNGLGKSSHLIDLDFM 203
           L+ VF TYFRIL+                         PLL   L GL K +HLI+++F 
Sbjct: 497 LNIVFVTYFRILKKAQR--------------------SPLLPAVLEGLAKFAHLINVEFF 551

[Close]
BLAST of CmaCh19G011000 vs. Swiss-Prot
Match: NOC3L_MOUSE (Nucleolar complex protein 3 homolog OS=Mus musculus GN=Noc3l PE=2 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 9.2e-06
Identity = 44/200 (22.00%), Postives = 88/200 (44.00%), Query Frame = 1 

Query: 36  IIKLCSGAIKYLFINEGKHGGEATMEAVRLVADQVKFHDCQLPPDSIQSLA--------- 95
           + ++C  A+K LF  +    G+A++  +++++  VK  + ++ P+ +++           
Sbjct: 376 VSEMCCEAVKKLFKQDKL--GQASLGVIKVISGFVKGRNYEVRPEMLKTFLCLRIKEVEV 435

Query: 96  ---RDDARQSTR------------------TKFTEEVASDYRAASLAPDVMKQREMQSDT 155
               +D  +  R                   K  E++  + R A  +    K+ ++ ++T
Sbjct: 436 KKDTEDINKPKRFMTFKEKRKTLSRMQRKWKKAEEKLERELREAEASESTEKKLKLHTET 495

Query: 156 LSAVFETYFRILRHTMELLNARPEANITAPTTSPSGSHPLLAPCLNGLGKSSHLIDLDFM 206
           L+ VF TYFRIL+   +                     PLL   L GL K +HLI+++F 
Sbjct: 496 LNIVFVTYFRILKKAQK--------------------SPLLPAVLEGLAKFAHLINVEFF 553

[Close]
BLAST of CmaCh19G011000 vs. TrEMBL
Match: A0A0A0K7H5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G238410 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 4.1e-61
Identity = 132/208 (63.46%), Postives = 147/208 (70.67%), Query Frame = 1 

Query: 38  KLCSGAIKYLFINEGKHGGEATMEAVRLVADQVKFHDCQLPPDSIQSLAR----DDARQS 97
           KLC GAI+ LFINEGKHGGEAT+EAVRL+AD VK+HDCQL PDSIQ        +D R++
Sbjct: 337 KLCCGAIQSLFINEGKHGGEATVEAVRLIADHVKYHDCQLHPDSIQPFVHLVFDEDLRKA 396

Query: 98  TRT---------------------------------KFTEEVASDYRAASLAPDVMKQRE 157
            +                                  KFTEEV +DYRAASLAPDVMKQRE
Sbjct: 397 EKQDEHSKVKNKKHRKIKNREEPSQQGNDGRQSTRTKFTEEVVADYRAASLAPDVMKQRE 456

Query: 158 MQSDTLSAVFETYFRILRHTMELLNARPEANITAPTTSPSGSHPLLAPCLNGLGKSSHLI 209
           MQSDTLSAVFETYFRILRHTM+ L + PEA+    TTS SGSHPLL PCLNGLGK SHLI
Sbjct: 457 MQSDTLSAVFETYFRILRHTMQSLTSGPEASSAPSTTSASGSHPLLVPCLNGLGKFSHLI 516

[Close]
BLAST of CmaCh19G011000 vs. TrEMBL
Match: M5WM32_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016725mg PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.8e-46
Identity = 109/206 (52.91%), Postives = 132/206 (64.08%), Query Frame = 1 

Query: 38  KLCSGAIKYLFINEGKHGGEATMEAVRLVADQVKFHDCQLPPDSIQ------------SL 97
           KLC  +IK LF NEGKHGGEAT+EAVRL+AD VK H+CQL PDS++              
Sbjct: 336 KLCCSSIKSLFTNEGKHGGEATVEAVRLIADHVKAHNCQLHPDSVEVFLSLSFDEDLGRA 395

Query: 98  ARDD-----------------------------ARQSTRTKFTEEVASDYRAASLAPDVM 157
           AR+D                             +RQ   TK  EEVA+DY+A +LAPDVM
Sbjct: 396 ARNDEKHKPQSKKSKKKKHYEEARQLKENDKKRSRQELLTKTREEVAADYKAVALAPDVM 455

Query: 158 KQREMQSDTLSAVFETYFRILRHTMELLNARPEANITAPTTSPSGSHPLLAPCLNGLGKS 203
           ++R MQ++ LSAVFETYFRIL+HTM+   +R EAN +  +T  S  HPLLAPCL GLGK 
Sbjct: 456 ERRGMQTEALSAVFETYFRILKHTMQSSASRSEANASL-STGASEPHPLLAPCLKGLGKF 515

[Close]
BLAST of CmaCh19G011000 vs. TrEMBL
Match: A0A0D2U194_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G141600 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 5.9e-44
Identity = 105/206 (50.97%), Postives = 130/206 (63.11%), Query Frame = 1 

Query: 38  KLCSGAIKYLFINEGKHGGEATMEAVRLVADQVKFHDCQLPPDSIQ---SLARDD----- 97
           ++C   IK LF +EGKHGGEAT+EAVRL+AD VK HDCQL PDS++   SL+ DD     
Sbjct: 180 RICCSTIKSLFTSEGKHGGEATVEAVRLIADHVKVHDCQLHPDSVEVLMSLSFDDDLGKP 239

Query: 98  ---------------------------------ARQSTRTKFTEEVASDYRAASLAPDVM 157
                                            ++Q T  K  EEVA+DY+A S  PDV 
Sbjct: 240 EVQEGNNKMKNKKNKKRKNFEESNQPQGNDRKRSKQETIAKMKEEVAADYKAVSYTPDVE 299

Query: 158 KQREMQSDTLSAVFETYFRILRHTMELLNARPEANITAPTTSPSGSHPLLAPCLNGLGKS 203
           +++ MQS+TLSAVFETYFRILRHTM+   A  EAN    T+  SG+HPLLAPCL+GLGK 
Sbjct: 300 ERKRMQSETLSAVFETYFRILRHTMQSSVASSEANGNI-TSGGSGAHPLLAPCLSGLGKF 359

[Close]
BLAST of CmaCh19G011000 vs. TrEMBL
Match: A0A0D2VDN0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G141600 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 5.9e-44
Identity = 105/206 (50.97%), Postives = 130/206 (63.11%), Query Frame = 1 

Query: 38  KLCSGAIKYLFINEGKHGGEATMEAVRLVADQVKFHDCQLPPDSIQ---SLARDD----- 97
           ++C   IK LF +EGKHGGEAT+EAVRL+AD VK HDCQL PDS++   SL+ DD     
Sbjct: 229 RICCSTIKSLFTSEGKHGGEATVEAVRLIADHVKVHDCQLHPDSVEVLMSLSFDDDLGKP 288

Query: 98  ---------------------------------ARQSTRTKFTEEVASDYRAASLAPDVM 157
                                            ++Q T  K  EEVA+DY+A S  PDV 
Sbjct: 289 EVQEGNNKMKNKKNKKRKNFEESNQPQGNDRKRSKQETIAKMKEEVAADYKAVSYTPDVE 348

Query: 158 KQREMQSDTLSAVFETYFRILRHTMELLNARPEANITAPTTSPSGSHPLLAPCLNGLGKS 203
           +++ MQS+TLSAVFETYFRILRHTM+   A  EAN    T+  SG+HPLLAPCL+GLGK 
Sbjct: 349 ERKRMQSETLSAVFETYFRILRHTMQSSVASSEANGNI-TSGGSGAHPLLAPCLSGLGKF 408

[Close]
BLAST of CmaCh19G011000 vs. TrEMBL
Match: A0A0D2SDY2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G141600 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 5.9e-44
Identity = 105/206 (50.97%), Postives = 130/206 (63.11%), Query Frame = 1 

Query: 38  KLCSGAIKYLFINEGKHGGEATMEAVRLVADQVKFHDCQLPPDSIQ---SLARDD----- 97
           ++C   IK LF +EGKHGGEAT+EAVRL+AD VK HDCQL PDS++   SL+ DD     
Sbjct: 332 RICCSTIKSLFTSEGKHGGEATVEAVRLIADHVKVHDCQLHPDSVEVLMSLSFDDDLGKP 391

Query: 98  ---------------------------------ARQSTRTKFTEEVASDYRAASLAPDVM 157
                                            ++Q T  K  EEVA+DY+A S  PDV 
Sbjct: 392 EVQEGNNKMKNKKNKKRKNFEESNQPQGNDRKRSKQETIAKMKEEVAADYKAVSYTPDVE 451

Query: 158 KQREMQSDTLSAVFETYFRILRHTMELLNARPEANITAPTTSPSGSHPLLAPCLNGLGKS 203
           +++ MQS+TLSAVFETYFRILRHTM+   A  EAN    T+  SG+HPLLAPCL+GLGK 
Sbjct: 452 ERKRMQSETLSAVFETYFRILRHTMQSSVASSEANGNI-TSGGSGAHPLLAPCLSGLGKF 511

[Close]
BLAST of CmaCh19G011000 vs. TAIR10
Match: AT1G79150.1 (AT1G79150.1 binding)

HSP 1 Score: 155.6 bits (392), Expect = 3.3e-38
Identity = 96/232 (41.38%), Postives = 134/232 (57.76%), Query Frame = 1 

Query: 20  DNAAISLSSFIALLHEIIK-LCSGAIKYLFINEGKHGGEATMEAVRLVADQVKFHDCQLP 79
           DN  I++   I+   E+++ LC   I+YLF NEGKHGGE T++AVRL+AD VK H+CQL 
Sbjct: 315 DNLLIAVVRNISSPDEVVRRLCCSTIRYLFSNEGKHGGELTVQAVRLIADHVKAHNCQLH 374

Query: 80  PDSIQ---SLARDD--------------ARQSTRTKFTEEV------------------- 139
           P++I+   S+  D+               +++ + K  EE                    
Sbjct: 375 PNAIEVFMSIRFDEDIGKPNKEDEHNKKYKKNNKRKTQEEQNQVQENERKKSKKDMMSKI 434

Query: 140 ----ASDYRAASLAPDVMKQREMQSDTLSAVFETYFRILRHTMELLNARPEANITAPTTS 199
               ++D+R  +  PD  ++R+MQ++TLSAVFETYFRILR+TM  +  R E     PT++
Sbjct: 435 RDEVSADHRGVTYEPDAKERRKMQTETLSAVFETYFRILRNTMYTIGERTE---EIPTSN 494

Query: 200 PS--GSHPLLAPCLNGLGKSSHLIDLDFMGDLMNYLKSLVSGGDNSSEKQSQ 209
           P   GSHPLLAPCL+GL K +  +DLD+MGDLMNYLK L S   + S    Q
Sbjct: 495 PGAFGSHPLLAPCLDGLAKFTQQLDLDYMGDLMNYLKKLASSSSSVSNNTKQ 543

[Close]
BLAST of CmaCh19G011000 vs. NCBI nr
Match: gi|449444134|ref|XP_004139830.1| (PREDICTED: nucleolar complex protein 3 homolog [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 5.9e-61
Identity = 132/208 (63.46%), Postives = 147/208 (70.67%), Query Frame = 1 

Query: 38  KLCSGAIKYLFINEGKHGGEATMEAVRLVADQVKFHDCQLPPDSIQSLAR----DDARQS 97
           KLC GAI+ LFINEGKHGGEAT+EAVRL+AD VK+HDCQL PDSIQ        +D R++
Sbjct: 337 KLCCGAIQSLFINEGKHGGEATVEAVRLIADHVKYHDCQLHPDSIQPFVHLVFDEDLRKA 396

Query: 98  TRT---------------------------------KFTEEVASDYRAASLAPDVMKQRE 157
            +                                  KFTEEV +DYRAASLAPDVMKQRE
Sbjct: 397 EKQDEHSKVKNKKHRKIKNREEPSQQGNDGRQSTRTKFTEEVVADYRAASLAPDVMKQRE 456

Query: 158 MQSDTLSAVFETYFRILRHTMELLNARPEANITAPTTSPSGSHPLLAPCLNGLGKSSHLI 209
           MQSDTLSAVFETYFRILRHTM+ L + PEA+    TTS SGSHPLL PCLNGLGK SHLI
Sbjct: 457 MQSDTLSAVFETYFRILRHTMQSLTSGPEASSAPSTTSASGSHPLLVPCLNGLGKFSHLI 516

[Close]
BLAST of CmaCh19G011000 vs. NCBI nr
Match: gi|659092555|ref|XP_008447119.1| (PREDICTED: nucleolar complex protein 3 homolog [Cucumis melo])

HSP 1 Score: 231.9 bits (590), Expect = 1.0e-57
Identity = 128/209 (61.24%), Postives = 144/209 (68.90%), Query Frame = 1 

Query: 38  KLCSGAIKYLFINEGKHGGEATMEAVRLVADQVKFHDCQLPPDSIQSLAR----DDARQS 97
           KLC GAI+ LFINEGKHGGEAT+EAVRL+AD VK+HDCQL PDSIQ        +D R++
Sbjct: 337 KLCCGAIQSLFINEGKHGGEATVEAVRLIADHVKYHDCQLHPDSIQPFVHLMFDEDLRKA 396

Query: 98  TRTKFTEEVASD----------------------------------YRAASLAPDVMKQR 157
            +     +V +                                   YR+ASLAPDVMKQR
Sbjct: 397 EKQDDHSKVKNKKHRKIKNREEPSHLQGNDGRQSMRTKFTEEVVADYRSASLAPDVMKQR 456

Query: 158 EMQSDTLSAVFETYFRILRHTMELLNARPEANITAPTTSPSGSHPLLAPCLNGLGKSSHL 209
           EMQSDTLSAVFETYFRILRHTM+ L A PEA+    TTSPSGSHPLLAPCLNGLGK SHL
Sbjct: 457 EMQSDTLSAVFETYFRILRHTMQSLTAGPEASSAPSTTSPSGSHPLLAPCLNGLGKFSHL 516

[Close]
BLAST of CmaCh19G011000 vs. NCBI nr
Match: gi|595892340|ref|XP_007213560.1| (hypothetical protein PRUPE_ppa016725mg, partial [Prunus persica])

HSP 1 Score: 192.6 bits (488), Expect = 7.0e-46
Identity = 109/206 (52.91%), Postives = 132/206 (64.08%), Query Frame = 1 

Query: 38  KLCSGAIKYLFINEGKHGGEATMEAVRLVADQVKFHDCQLPPDSIQ------------SL 97
           KLC  +IK LF NEGKHGGEAT+EAVRL+AD VK H+CQL PDS++              
Sbjct: 336 KLCCSSIKSLFTNEGKHGGEATVEAVRLIADHVKAHNCQLHPDSVEVFLSLSFDEDLGRA 395

Query: 98  ARDD-----------------------------ARQSTRTKFTEEVASDYRAASLAPDVM 157
           AR+D                             +RQ   TK  EEVA+DY+A +LAPDVM
Sbjct: 396 ARNDEKHKPQSKKSKKKKHYEEARQLKENDKKRSRQELLTKTREEVAADYKAVALAPDVM 455

Query: 158 KQREMQSDTLSAVFETYFRILRHTMELLNARPEANITAPTTSPSGSHPLLAPCLNGLGKS 203
           ++R MQ++ LSAVFETYFRIL+HTM+   +R EAN +  +T  S  HPLLAPCL GLGK 
Sbjct: 456 ERRGMQTEALSAVFETYFRILKHTMQSSASRSEANASL-STGASEPHPLLAPCLKGLGKF 515

[Close]
BLAST of CmaCh19G011000 vs. NCBI nr
Match: gi|645239409|ref|XP_008226112.1| (PREDICTED: nucleolar complex protein 3 homolog [Prunus mume])

HSP 1 Score: 191.0 bits (484), Expect = 2.0e-45
Identity = 108/206 (52.43%), Postives = 131/206 (63.59%), Query Frame = 1 

Query: 38  KLCSGAIKYLFINEGKHGGEATMEAVRLVADQVKFHDCQLPPDSIQ------------SL 97
           KLC  +IK LF NEGKHGGEAT+EAVRL+AD VK H+CQL PDS++              
Sbjct: 336 KLCCSSIKSLFTNEGKHGGEATVEAVRLIADHVKAHNCQLHPDSVEVFLSLSFDEDLGRA 395

Query: 98  ARDD-----------------------------ARQSTRTKFTEEVASDYRAASLAPDVM 157
           AR+D                             +RQ   TK  EEVA+DY+A +L PDVM
Sbjct: 396 ARNDEKHKPQSKKSKKKKHYEEARQLKENDKKRSRQELLTKTREEVAADYKAVALTPDVM 455

Query: 158 KQREMQSDTLSAVFETYFRILRHTMELLNARPEANITAPTTSPSGSHPLLAPCLNGLGKS 203
           ++R MQ++ LSAVFETYFRIL+HTM+   +R EAN +  +T  S  HPLLAPCL GLGK 
Sbjct: 456 ERRGMQTEALSAVFETYFRILKHTMQSSASRSEANASL-STGASEPHPLLAPCLKGLGKF 515

[Close]
BLAST of CmaCh19G011000 vs. NCBI nr
Match: gi|763814521|gb|KJB81373.1| (hypothetical protein B456_013G141600 [Gossypium raimondii])

HSP 1 Score: 185.7 bits (470), Expect = 8.5e-44
Identity = 105/206 (50.97%), Postives = 130/206 (63.11%), Query Frame = 1 

Query: 38  KLCSGAIKYLFINEGKHGGEATMEAVRLVADQVKFHDCQLPPDSIQ---SLARDD----- 97
           ++C   IK LF +EGKHGGEAT+EAVRL+AD VK HDCQL PDS++   SL+ DD     
Sbjct: 180 RICCSTIKSLFTSEGKHGGEATVEAVRLIADHVKVHDCQLHPDSVEVLMSLSFDDDLGKP 239

Query: 98  ---------------------------------ARQSTRTKFTEEVASDYRAASLAPDVM 157
                                            ++Q T  K  EEVA+DY+A S  PDV 
Sbjct: 240 EVQEGNNKMKNKKNKKRKNFEESNQPQGNDRKRSKQETIAKMKEEVAADYKAVSYTPDVE 299

Query: 158 KQREMQSDTLSAVFETYFRILRHTMELLNARPEANITAPTTSPSGSHPLLAPCLNGLGKS 203
           +++ MQS+TLSAVFETYFRILRHTM+   A  EAN    T+  SG+HPLLAPCL+GLGK 
Sbjct: 300 ERKRMQSETLSAVFETYFRILRHTMQSSVASSEANGNI-TSGGSGAHPLLAPCLSGLGKF 359

The following BLAST results are available for this feature:
BLAST of CmaCh19G011000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NOC3L_HUMAN4.1e-0622.50Nucleolar complex protein 3 homolog OS=Homo sapiens GN=NOC3L PE=1 SV=1[more]
NOC3L_PONAB7.0e-0622.84Nucleolar complex protein 3 homolog OS=Pongo abelii GN=NOC3L PE=2 SV=1[more]
NOC3L_MOUSE9.2e-0622.00Nucleolar complex protein 3 homolog OS=Mus musculus GN=Noc3l PE=2 SV=2[more]
BLAST of CmaCh19G011000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7H5_CUCSA4.1e-6163.46Uncharacterized protein OS=Cucumis sativus GN=Csa_7G238410 PE=4 SV=1[more]
M5WM32_PRUPE4.8e-4652.91Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016725mg PE=4 S... [more]
A0A0D2U194_GOSRA5.9e-4450.97Uncharacterized protein OS=Gossypium raimondii GN=B456_013G141600 PE=4 SV=1[more]
A0A0D2VDN0_GOSRA5.9e-4450.97Uncharacterized protein OS=Gossypium raimondii GN=B456_013G141600 PE=4 SV=1[more]
A0A0D2SDY2_GOSRA5.9e-4450.97Uncharacterized protein OS=Gossypium raimondii GN=B456_013G141600 PE=4 SV=1[more]
BLAST of CmaCh19G011000 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G79150.13.3e-3841.38 binding[more]
BLAST of CmaCh19G011000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449444134|ref|XP_004139830.1|5.9e-6163.46PREDICTED: nucleolar complex protein 3 homolog [Cucumis sativus][more]
gi|659092555|ref|XP_008447119.1|1.0e-5761.24PREDICTED: nucleolar complex protein 3 homolog [Cucumis melo][more]
gi|595892340|ref|XP_007213560.1|7.0e-4652.91hypothetical protein PRUPE_ppa016725mg, partial [Prunus persica][more]
gi|645239409|ref|XP_008226112.1|2.0e-4552.43PREDICTED: nucleolar complex protein 3 homolog [Prunus mume][more]
gi|763814521|gb|KJB81373.1|8.5e-4450.97hypothetical protein B456_013G141600 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G011000.1CmaCh19G011000.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR14428NUCLEOLAR COMPLEX PROTEIN 3coord: 35..141
score: 2.3E-32coord: 162..204
score: 2.3
NoneNo IPR availablePANTHERPTHR14428:SF5NUCLEOLAR COMPLEX PROTEIN 3 HOMOLOGcoord: 162..204
score: 2.3E-32coord: 35..141
score: 2.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh19G011000CmoCh19G011280Cucurbita moschata (Rifu)cmacmoB508
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G011000Cucurbita maxima (Rimu)cmacmaB148
CmaCh19G011000Cucurbita maxima (Rimu)cmacmaB442
CmaCh19G011000Cucurbita maxima (Rimu)cmacmaB454
CmaCh19G011000Cucumber (Gy14) v1cgycmaB0298
CmaCh19G011000Cucumber (Gy14) v1cgycmaB0667
CmaCh19G011000Cucurbita moschata (Rifu)cmacmoB492
CmaCh19G011000Cucurbita moschata (Rifu)cmacmoB514
CmaCh19G011000Wild cucumber (PI 183967)cmacpiB528
CmaCh19G011000Wild cucumber (PI 183967)cmacpiB535
CmaCh19G011000Cucumber (Chinese Long) v2cmacuB522
CmaCh19G011000Cucumber (Chinese Long) v2cmacuB529
CmaCh19G011000Melon (DHL92) v3.5.1cmameB464
CmaCh19G011000Melon (DHL92) v3.5.1cmameB452
CmaCh19G011000Watermelon (Charleston Gray)cmawcgB439
CmaCh19G011000Watermelon (Charleston Gray)cmawcgB458
CmaCh19G011000Watermelon (97103) v1cmawmB470
CmaCh19G011000Watermelon (97103) v1cmawmB500
CmaCh19G011000Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G011000Cucurbita pepo (Zucchini)cmacpeB527
CmaCh19G011000Cucurbita pepo (Zucchini)cmacpeB537
CmaCh19G011000Cucurbita pepo (Zucchini)cmacpeB546
CmaCh19G011000Bottle gourd (USVL1VR-Ls)cmalsiB471
CmaCh19G011000Bottle gourd (USVL1VR-Ls)cmalsiB474
CmaCh19G011000Cucumber (Gy14) v2cgybcmaB783
CmaCh19G011000Cucumber (Gy14) v2cgybcmaB946
CmaCh19G011000Melon (DHL92) v3.6.1cmamedB522
CmaCh19G011000Melon (DHL92) v3.6.1cmamedB537
CmaCh19G011000Silver-seed gourdcarcmaB0471
CmaCh19G011000Silver-seed gourdcarcmaB0547
CmaCh19G011000Silver-seed gourdcarcmaB0745
CmaCh19G011000Cucumber (Chinese Long) v3cmacucB0633
CmaCh19G011000Cucumber (Chinese Long) v3cmacucB0640
CmaCh19G011000Watermelon (97103) v2cmawmbB528
CmaCh19G011000Watermelon (97103) v2cmawmbB547
CmaCh19G011000Wax gourdcmawgoB0654
CmaCh19G011000Wax gourdcmawgoB0666