CmaCh19G010910 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G010910
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPeptidyl-prolyl cis-trans isomerase-like 4
LocationCma_Chr19 : 9071363 .. 9075066 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGTTGCTTGTGCCGGCCACCCGAGACCGCCGCCTTTTCTCACCGTTTCTCTCTTTGATATCTCTTCTTTTTCCGACAGCTCCAACTTCTAGGGAGTTCAGTTGGCTTCGAGTTTGAGCTTTGAACTCAAAGCATCAAACAAGTAGCTCAACGAACAGCCGCATGTAATTGCCACAAAGCGCACAGCAGTTTGCGGAGAAAGAAGACAGAGAGCGGAAGCAATGTCCGTACTTATTGTAACCAGTCTGGGAGACATTGTGATCGACCTACGCACCGACATGTGCCCCTTGACCTCCAAGAATTTCTTGAAGCTCTGTAAGTGAGTCAGTTCTTCCATTTTCTCTGTTCTAACTATTAGTTTTGCTGCCTGAATTTGGTTCAGAGTGCGCGTATCGTCTTTTTTTCTAACTCTTTCCTTAATCCGCTTTCATCCACGAGCAGCAATAGTTTTCGTAATTCAGGCTCTGAAATTTTCTATTTACCGGGCGGAAATGTTCATTTTCGCGGCTAATTTGTTTACTTGATGTGAAGAATTCAGCTTGATAGTTTCCATGTCCTAGTTTTAATTCCATATCATTTTTCACCTGGCTGATGCAGAATTAAATTCTACAACACATTATACAGAAGGACTTAACTGCTCAGACTGGTGACCCCACTGACTTTTCCATCCAATGACAATCAAGTGCCCAACTTGTCTTTCTTGTTCAAGTTTATTTCCATAATTCTTAAATCTAACTTATTTTATTGTAATTACCATTGTATATGCGAAGTAGGCTGTGAAAACTTCATTTCCAGCATGGTTTGGTGTTCATTCTTCAATCTTAATTAAAAACTTCAGCTGATTCAATCTTATCTTGTCGTGCAATCTAATTAAATCTCGCTTAGGAATTGGATTTAATTTTGATTTGATTTAGTTTAGATTTGATTTAATTTTTTATTTGTTTATGGTTGTTACAAGATTTTCTGCTTAGGTAGATTTTCTAAATATCTTTTTGTATTATCTCTATATGTATAGAGCATACTCTTCATAATATAATCTTCTCATCAACTATTCAATCACTCACTCTTTCACTAAATAAGACTAAAGAGGCATGTGAACAAGCATATTTTAAGGTGTGTTAAAAAAATGAACTGTTGTTGGCCAGTTCCCCCACTGCCATTGTTGAAAAGACATGTCTTATAATCTTTTCTTGTTTATGGAAGATGGACAATGCTCTGATTGATGATAATAGGTAAATGGTAGAAGGAGAAGTACAGATGATATGGACAAAGAAATTTGGACGGTAAAAAGCAGAAATGAAAGATAGGGGATGAGCTATTTAGATTGAAAGAGTTGTAGATGACTGTTAAACTAACTCCAGTAGATGGAATGTCACATGGGCTGAAGTCACTTCATGGTGGCCTTCTATGGTACAATGCTACACATAGGAATGCTGCCTTCATTGGTGGTGGTACAGGGAGAAGCTACAAAACACTCTAAATAAATAGGTAATCAATTTTAGAAGTTTCAAATCATAAACTAAAAAATTACGAACATCACCACTGTAGGAGTCATCAGAAAAATACAGCCATTTAGGCTAGAGCTAGAATCCATGATTGGTCCATTTCAAACAGTTGTTAAATATCTGAAAAAGGTTGTTCAGCATTCCGATTTGTATAAATGATGAATGAAGAAGAAACTTTTCTCTTACGGGTTTATAAAGAGCATCATATTAGATTTCCAATTTAGTCGTAGGAAAAAGATTGTGTTGTGTTTATGGGTGAAAGCCAGGCTAAGCCTAATGCGTGTTTGTTGCTTTGTTATTCCGTTTCCAATTGTGTAGTCATGTCTTTAGTGTCTTTATATTATATTTTTCTTCTTAGACTATGAAATTTCGGATTGAAGAGAAGAATGAGTGCTAGTGAGGACAAATGGGCTTCGAAGGGGATGGATTGTGATATTCCATATTGGTTGAAGAGGGGAACGAAACATTGTTTATGAGGGTGTGGAAACCTCTCTCTCGCAGATGCGTTTTAAAATTTTTAAGAAACCAGAAAGGGAAAACCCAAGAAAGACAATATCTACTAGTGGTGGGTTTGAGTTGTTACACACCAGGAAGAACATGTAATTAAATAAGACTGATCTTATTTCGTTTTGTTTCCACCACTTACATATTAGGATGAAGTTTATGTACTAATCAAAGTCAACGGTTACACGATTTACAGCCTGAGAGCGTTCTTTGTAACCCATCCTTTCGTTGACAACCTTGGTAGCTTTTTTGCTTTTCAAGTAGGTTATCACATCTTACGTCATATAAAAGTGCCTCACTCGTCGAATGTTCAGCTTCATCACTACTTACCGTTCATCAATTGAAGCATTATTGTTCGAATCAGGAGGCCATCTTCATCATCACCTTAAATTGATCATCTTTGGCAGAGGAAGCCAAAATTTGTCATGCTTGCTCTAGCACCCGACAAAGATCGTGGCGAACCTGACCTTATCGGTGTTTTCAGAATGTGCTTTTTCGACCTCAAAGCTGGCATGCTTGCCTCAATGTTAGAGAGGAAACAATGCAGGCAGTGCAAGACTTGTCCTTGGTACGTACGCGCCTCTGTATTCTTCTTACTGTACCATTCATCAAGTAAAATGTGTTGAGTCTGCTAGAACATGAAGCATTGTCATACATAAATGGAATGTGTAATTTCTATCCATGGTTTATTTTTCTAGTATTTACCACACCCAAACACCATAAATTTGAAAATACTTCTGAACTTACATATAATTGAGATGAAGACATCCAATATATAAGTTCATGTCCTTGTCTAATCTAGATTCTACCTTTTCAAATATTTTAGTTTCACCCAACTTGCTACCATTTTAAATGGTTGAACTGTCACATTAAAGTTGGTGAATTGAGCTTTCTCCTGCCAACTCTTTGATTGATTAGTATTAATGTTTTCCCCCTCCCTGCATTTGAAAAAAGCATGCCTGTTATATCATATAGTTTATTACTTGAACCTAAAAGTCTCATAAGTTGGGTTGATTATCATTAAGCCTGCATTCACACAATAAAATTATGATTAACCCAAAGATTATTTCCTCAGGTACTTAATTATCATTGAATCAGGGCTGAACTCATAAATATTTTGTAAGAAAAATGATGTTTTGACAGGTGGCCGAAGTATATACACGACAGCTCTCCAAACAGTTAGATGATACACGAAGAACATGTATATGAGAAACGTGTGTGTACTTGTCGACTTCTCATTTAAGACCAATTTCACCAACTGCTACCTGCTGCCTATATTGAGTTGTGAACAGAAATAACTCCACCAATAATTGCATCAACCCTCTTGGCTTTGGCTTTGGCATATATATGTTGAACATTGTTTGTGTGGCAGTCTTAAAGCTTTTTCCATATTTAACAAAGTTTGAAACAGAAGGGTCGAAGAGAAGAAAAAGGCAGCTAAGGGCCATGCAGTTGTTGTCATTGGTTGCATATTACATATTTTTCAATGCTTCGAAGGTTGCTTATTTTGTATTCTTGGTGCTCCTTGTAGCTTTTAATCTCATCATACTCGCGGATAATATGCGACATTTGGAGACACTTGGAGCTCTGATTTGCAAGGATGAGGTTCAAAATTGTGTGTTTTTCCGGTTTGAAGCCTCTCACGATCAATCTCTTCACTACTACAGCCTCAACTACAATGCTTCTGTTTGTTAG

mRNA sequence

CAGTTGCTTGTGCCGGCCACCCGAGACCGCCGCCTTTTCTCACCGTTTCTCTCTTTGATATCTCTTCTTTTTCCGACAGCTCCAACTTCTAGGGAGTTCAGTTGGCTTCGAGTTTGAGCTTTGAACTCAAAGCATCAAACAAGTAGCTCAACGAACAGCCGCATGTAATTGCCACAAAGCGCACAGCAGTTTGCGGAGAAAGAAGACAGAGAGCGGAAGCAATGTCCGTACTTATTGTAACCAGTCTGGGAGACATTGTGATCGACCTACGCACCGACATGTGCCCCTTGACCTCCAAGAATTTCTTGAAGCTCTTAGATGGAATGTCACATGGGCTGAAGTCACTTCATGGTGGCCTTCTATGGTACAATGCTACACATAGGAATGCTGCCTTCATTGGTGGTGCTTTTAATCTCATCATACTCGCGGATAATATGCGACATTTGGAGACACTTGGAGCTCTGATTTGCAAGGATGAGGTTCAAAATTGTGTGTTTTTCCGGTTTGAAGCCTCTCACGATCAATCTCTTCACTACTACAGCCTCAACTACAATGCTTCTGTTTGTTAG

Coding sequence (CDS)

ATGTCCGTACTTATTGTAACCAGTCTGGGAGACATTGTGATCGACCTACGCACCGACATGTGCCCCTTGACCTCCAAGAATTTCTTGAAGCTCTTAGATGGAATGTCACATGGGCTGAAGTCACTTCATGGTGGCCTTCTATGGTACAATGCTACACATAGGAATGCTGCCTTCATTGGTGGTGCTTTTAATCTCATCATACTCGCGGATAATATGCGACATTTGGAGACACTTGGAGCTCTGATTTGCAAGGATGAGGTTCAAAATTGTGTGTTTTTCCGGTTTGAAGCCTCTCACGATCAATCTCTTCACTACTACAGCCTCAACTACAATGCTTCTGTTTGTTAG

Protein sequence

MSVLIVTSLGDIVIDLRTDMCPLTSKNFLKLLDGMSHGLKSLHGGLLWYNATHRNAAFIGGAFNLIILADNMRHLETLGALICKDEVQNCVFFRFEASHDQSLHYYSLNYNASVC
Homology
[Close]
BLAST of CmaCh19G010910 vs. Swiss-Prot
Match: CYP59_ARATH (Peptidyl-prolyl cis-trans isomerase CYP59 OS=Arabidopsis thaliana GN=CYP59 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-06
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 1 

Query: 1  MSVLIVTSLGDIVIDLRTDMCPLTSKNFLKL 32
          MSVLIVTSLGDIVIDL +D CPLT KNFLKL
Sbjct: 1  MSVLIVTSLGDIVIDLHSDKCPLTCKNFLKL 31

[Close]
BLAST of CmaCh19G010910 vs. TAIR10
Match: AT1G53720.1 (AT1G53720.1 cyclophilin 59)

HSP 1 Score: 53.5 bits (127), Expect = 9.8e-08
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 1 

Query: 1  MSVLIVTSLGDIVIDLRTDMCPLTSKNFLKL 32
          MSVLIVTSLGDIVIDL +D CPLT KNFLKL
Sbjct: 1  MSVLIVTSLGDIVIDLHSDKCPLTCKNFLKL 31

[Close]
BLAST of CmaCh19G010910 vs. NCBI nr
Match: gi|659092561|ref|XP_008447122.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase-like 4 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-06
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 1 

Query: 1  MSVLIVTSLGDIVIDLRTDMCPLTSKNFLKL 32
          MSVLIVTSLGDIVIDL TDMCPLTSKNFLKL
Sbjct: 1  MSVLIVTSLGDIVIDLHTDMCPLTSKNFLKL 31

The following BLAST results are available for this feature:
BLAST of CmaCh19G010910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CYP59_ARATH1.7e-0687.10Peptidyl-prolyl cis-trans isomerase CYP59 OS=Arabidopsis thaliana GN=CYP59 PE=1 ... [more]
BLAST of CmaCh19G010910 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh19G010910 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G53720.19.8e-0887.10 cyclophilin 59[more]
BLAST of CmaCh19G010910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659092561|ref|XP_008447122.1|5.1e-0696.77PREDICTED: peptidyl-prolyl cis-trans isomerase-like 4 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002130Cyclophilin-type_PPIase_dom
Vocabulary: Biological Process
TermDefinition
GO:0000413protein peptidyl-prolyl isomerization
GO:0006457protein folding
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
biological_process GO:0000413 protein peptidyl-prolyl isomerization
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G010910.1CmaCh19G010910.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainPFAMPF00160Pro_isomerasecoord: 4..38
score: 6.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh19G010910CmoCh19G011200Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G010910MELO3C012622.2Melon (DHL92) v3.6.1cmamedB537
CmaCh19G010910CsaV3_7G022770Cucumber (Chinese Long) v3cmacucB0640
CmaCh19G010910Cla97C09G184150Watermelon (97103) v2cmawmbB547
CmaCh19G010910Bhi05G001744Wax gourdcmawgoB0654
CmaCh19G010910Carg15665Silver-seed gourdcarcmaB0745
CmaCh19G010910Carg04678Silver-seed gourdcarcmaB0547
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G010910Cucumber (Gy14) v2cgybcmaB783
CmaCh19G010910Cucumber (Gy14) v2cgybcmaB946
CmaCh19G010910Melon (DHL92) v3.6.1cmamedB522
CmaCh19G010910Silver-seed gourdcarcmaB0471
CmaCh19G010910Cucumber (Chinese Long) v3cmacucB0633
CmaCh19G010910Watermelon (97103) v2cmawmbB528
CmaCh19G010910Wax gourdcmawgoB0666
CmaCh19G010910Cucurbita maxima (Rimu)cmacmaB148
CmaCh19G010910Cucurbita maxima (Rimu)cmacmaB442
CmaCh19G010910Cucurbita maxima (Rimu)cmacmaB454
CmaCh19G010910Cucumber (Gy14) v1cgycmaB0298
CmaCh19G010910Cucumber (Gy14) v1cgycmaB0667
CmaCh19G010910Cucurbita moschata (Rifu)cmacmoB492
CmaCh19G010910Cucurbita moschata (Rifu)cmacmoB514
CmaCh19G010910Wild cucumber (PI 183967)cmacpiB528
CmaCh19G010910Wild cucumber (PI 183967)cmacpiB535
CmaCh19G010910Cucumber (Chinese Long) v2cmacuB522
CmaCh19G010910Cucumber (Chinese Long) v2cmacuB529
CmaCh19G010910Melon (DHL92) v3.5.1cmameB464
CmaCh19G010910Melon (DHL92) v3.5.1cmameB452
CmaCh19G010910Watermelon (Charleston Gray)cmawcgB439
CmaCh19G010910Watermelon (Charleston Gray)cmawcgB458
CmaCh19G010910Watermelon (97103) v1cmawmB470
CmaCh19G010910Watermelon (97103) v1cmawmB500
CmaCh19G010910Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G010910Cucurbita pepo (Zucchini)cmacpeB527
CmaCh19G010910Cucurbita pepo (Zucchini)cmacpeB537
CmaCh19G010910Cucurbita pepo (Zucchini)cmacpeB546
CmaCh19G010910Bottle gourd (USVL1VR-Ls)cmalsiB471
CmaCh19G010910Bottle gourd (USVL1VR-Ls)cmalsiB474