CmaCh19G010850 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G010850
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr19 : 9045653 .. 9046189 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCAAGAAATGGGCAGTAAGTTAGAGGCGGGGCCTTATGTTGCAGCTCCACCCCCGGTTGGGTATCCGGTGAGAGACGGCCCAGAGTACCCTCACCAAACTTCTACGCCACAGACGCAGTCTAGGGGAGATGGGTTCTGGAAAGGATGGTCAGTCTCTAAGTTTTATTACTTCATAAAATTTTTGTTAAATTAGATGATTGATTCACTGAACTTGTGGTTGTGTTTGATGTGTGTTTTGTAGCTGTGCTGCGTTGTGTTGCTGCTGGGTGTTGGACTGTGTGTTCTAAGAGTGACGGGGTTGGCTATTGGATGAGACCCATTTATTTATTTTTTGTTATTCTTTTATTACATACGCTTTCTTGTTATTCTGTATTATTCTATTTTCTGTGTATTAATAAATAAATTTTGTTATATAATTCAGTTCATATTTTCTATTATTTCGTAAAAAAATTGTAAATTCCATTACAAATATCTCTAATAGGTTACAAAACTTAAGCTTCGGTGACAAAAGAATGTAATTTTTATTTCGTGT

mRNA sequence

ATGAGTCAAGAAATGGGCAGTAAGTTAGAGGCGGGGCCTTATGTTGCAGCTCCACCCCCGGTTGGGTATCCGGTGAGAGACGGCCCAGAGTACCCTCACCAAACTTCTACGCCACAGACGCAGTCTAGGGGAGATGGGTTCTGGAAAGGATGGTCACTGTGCTGCGTTGTGTTGCTGCTGGGTGTTGGACTGTGTGTTCTAAGAGTGACGGGGTTGGCTATTGGATGAGACCCATTTATTTATTTTTTGTTATTCTTTTATTACATACGCTTTCTTGTTATTCTGTATTATTCTATTTTCTGTGTATTAATAAATAAATTTTGTTATATAATTCAGTTCATATTTTCTATTATTTCGTAAAAAAATTGTAAATTCCATTACAAATATCTCTAATAGGTTACAAAACTTAAGCTTCGGTGACAAAAGAATGTAATTTTTATTTCGTGT

Coding sequence (CDS)

ATGAGTCAAGAAATGGGCAGTAAGTTAGAGGCGGGGCCTTATGTTGCAGCTCCACCCCCGGTTGGGTATCCGGTGAGAGACGGCCCAGAGTACCCTCACCAAACTTCTACGCCACAGACGCAGTCTAGGGGAGATGGGTTCTGGAAAGGATGGTCACTGTGCTGCGTTGTGTTGCTGCTGGGTGTTGGACTGTGTGTTCTAAGAGTGACGGGGTTGGCTATTGGATGA

Protein sequence

MSQEMGSKLEAGPYVAAPPPVGYPVRDGPEYPHQTSTPQTQSRGDGFWKGWSLCCVVLLLGVGLCVLRVTGLAIG

Homology

[Close]

BLAST of CmaCh19G010850 vs. TrEMBL
Match: A0A0A0K5N8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G237300 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.9e-13
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 4  EMGSKLEAGPYVAAPPPVGYPVRDGPEYPHQTS-TPQTQSRGDGFWKGW--SLCCVVLL 60
          E   + ++GPYVAAPPPVGYPVRDGP+YPHQT+   QTQSRGDGFWKG   +LCC  +L
Sbjct: 24 EQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNFDAQTQSRGDGFWKGCCAALCCCWVL 82

[Close]

BLAST of CmaCh19G010850 vs. TrEMBL
Match: A0A072VSB2_MEDTR (Cysteine-rich TM module stress tolerance protein OS=Medicago truncatula GN=MTR_1g040735 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-07
Identity = 30/55 (54.55%), Postives = 34/55 (61.82%), Query Frame = 1


Query: 6   GSKLEAGPYVAAPPPVGYPVRDGPE--YPHQTSTPQTQSRGDGFWKGWSLCCVVL 59
           G      PYV APPP+GYP +DGP   YP+Q    QT +RGDGFWKG   CC  L
Sbjct: 75  GETYSTSPYVTAPPPMGYPTKDGPAEGYPNQRIPDQTTTRGDGFWKG---CCAAL 126

[Close]

BLAST of CmaCh19G010850 vs. TrEMBL
Match: G7ZY79_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_067s0027 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-07
Identity = 30/55 (54.55%), Postives = 34/55 (61.82%), Query Frame = 1


Query: 6  GSKLEAGPYVAAPPPVGYPVRDGPE--YPHQTSTPQTQSRGDGFWKGWSLCCVVL 59
          G      PYV APPP+GYP +DGP   YP+Q    QT +RGDGFWKG   CC  L
Sbjct: 18 GETYSTSPYVTAPPPMGYPTKDGPAEGYPNQRIPDQTTTRGDGFWKG---CCAAL 69

[Close]

BLAST of CmaCh19G010850 vs. TrEMBL
Match: G7IH44_MEDTR (Cysteine-rich TM module stress tolerance protein OS=Medicago truncatula GN=MTR_2g069420 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-07
Identity = 30/57 (52.63%), Postives = 37/57 (64.91%), Query Frame = 1


Query: 6  GSKLEAGPYVAAPPPVGYPVRDGPE-YPHQTSTPQTQSRGDGFWKGW--SLCCVVLL 60
          G    + PYV APPP+GYP +DG + YP Q  + QT SRGDGFWKG   ++CC   L
Sbjct: 18 GEGYSSAPYVTAPPPMGYPSKDGSQGYPQQKISDQTTSRGDGFWKGCCAAICCCCAL 74

[Close]

BLAST of CmaCh19G010850 vs. TrEMBL
Match: G7JWI3_MEDTR (Cysteine-rich TM module stress tolerance protein OS=Medicago truncatula GN=MTR_1g040775 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-07
Identity = 29/55 (52.73%), Postives = 34/55 (61.82%), Query Frame = 1


Query: 6  GSKLEAGPYVAAPPPVGYPVRDGPE--YPHQTSTPQTQSRGDGFWKGWSLCCVVL 59
          G      PYV APPP+GYP +DGP   YP+Q    Q+ +RGDGFWKG   CC  L
Sbjct: 18 GETYSTSPYVTAPPPMGYPTKDGPAEGYPNQRIPDQSTTRGDGFWKG---CCAAL 69

[Close]

BLAST of CmaCh19G010850 vs. TAIR10
Match: AT3G22240.1 (AT3G22240.1 unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 8.4e-08
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 1


Query: 1  MSQEMGSKLEAGPYVAAPPPVGYPVRDGPEYPHQTSTPQTQSRGDGFWKGW--SLCCVVL 60
          +S E  S+  +GPY + PPP+GYP RD        +  +T+S+GDGFWKG   ++CC  +
Sbjct: 9  LSVEKPSQTSSGPYTS-PPPIGYPTRDAMVGDPPAAAVETKSKGDGFWKGCCAAICCCCV 68

[Close]

BLAST of CmaCh19G010850 vs. NCBI nr
Match: gi|778725970|ref|XP_011659032.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 4  EMGSKLEAGPYVAAPPPVGYPVRDGPEYPHQTS-TPQTQSRGDGFWKGW--SLCCVVLL 60
          E   + ++GPYVAAPPPVGYPVRDGP+YPHQT+   QTQSRGDGFWKG   +LCC  +L
Sbjct: 24 EQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNFDAQTQSRGDGFWKGCCAALCCCWVL 82

[Close]

BLAST of CmaCh19G010850 vs. NCBI nr
Match: gi|659092574|ref|XP_008447127.1| (PREDICTED: CYSTM1 family protein A-like [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 4  EMGSKLEAGPYVAAPPPVGYPVRDGPEYPHQTS-TPQTQSRGDGFWKGW--SLCCVVLL 60
          E   + ++GPYVAAPPPVGYPVRDGP+YPHQT+   QTQSRGDGFWKG   +LCC  +L
Sbjct: 24 EQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNLDAQTQSRGDGFWKGCCAALCCCWVL 82

[Close]

BLAST of CmaCh19G010850 vs. NCBI nr
Match: gi|922399683|ref|XP_013466980.1| (cysteine-rich TM module stress tolerance protein [Medicago truncatula])

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-07
Identity = 30/55 (54.55%), Postives = 34/55 (61.82%), Query Frame = 1


Query: 6   GSKLEAGPYVAAPPPVGYPVRDGPE--YPHQTSTPQTQSRGDGFWKGWSLCCVVL 59
           G      PYV APPP+GYP +DGP   YP+Q    QT +RGDGFWKG   CC  L
Sbjct: 75  GETYSTSPYVTAPPPMGYPTKDGPAEGYPNQRIPDQTTTRGDGFWKG---CCAAL 126

[Close]

BLAST of CmaCh19G010850 vs. NCBI nr
Match: gi|359494565|ref|XP_003634806.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein B-like [Vitis vinifera])

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-07
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 1


Query: 14 YVAAPPPVGYPVRDGPEYPHQTSTPQTQSRGDGFWKGW--SLCCVVLL 60
          YVAAPPPVGYP+RDG  +P      +T+SRGDGFWKG   +LCC  +L
Sbjct: 45 YVAAPPPVGYPMRDGEGHPQNHRPVETKSRGDGFWKGCAAALCCCCVL 92

[Close]

BLAST of CmaCh19G010850 vs. NCBI nr
Match: gi|357451841|ref|XP_003596197.1| (cysteine-rich TM module stress tolerance protein [Medicago truncatula])

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-07
Identity = 30/57 (52.63%), Postives = 37/57 (64.91%), Query Frame = 1


Query: 6  GSKLEAGPYVAAPPPVGYPVRDGPE-YPHQTSTPQTQSRGDGFWKGW--SLCCVVLL 60
          G    + PYV APPP+GYP +DG + YP Q  + QT SRGDGFWKG   ++CC   L
Sbjct: 18 GEGYSSAPYVTAPPPMGYPSKDGSQGYPQQKISDQTTSRGDGFWKGCCAAICCCCAL 74

The following BLAST results are available for this feature:

BLAST of CmaCh19G010850 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh19G010850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5N8_CUCSA	1.9e-13	67.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G237300 PE=4 SV=1	[more]
A0A072VSB2_MEDTR	1.2e-07	54.55	Cysteine-rich TM module stress tolerance protein OS=Medicago truncatula GN=MTR_1...	[more]
G7ZY79_MEDTR	1.2e-07	54.55	Putative uncharacterized protein OS=Medicago truncatula GN=MTR_067s0027 PE=4 SV=...	[more]
G7IH44_MEDTR	2.7e-07	52.63	Cysteine-rich TM module stress tolerance protein OS=Medicago truncatula GN=MTR_2...	[more]
G7JWI3_MEDTR	3.6e-07	52.73	Cysteine-rich TM module stress tolerance protein OS=Medicago truncatula GN=MTR_1...	[more]

BLAST of CmaCh19G010850 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22240.1	8.4e-08	42.62	unknown protein	[more]

BLAST of CmaCh19G010850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778725970\|ref\|XP_011659032.1\|	2.8e-13	67.80	PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cuc...	[more]
gi\|659092574\|ref\|XP_008447127.1\|	2.8e-13	67.80	PREDICTED: CYSTM1 family protein A-like [Cucumis melo]	[more]
gi\|922399683\|ref\|XP_013466980.1\|	1.8e-07	54.55	cysteine-rich TM module stress tolerance protein [Medicago truncatula]	[more]
gi\|359494565\|ref\|XP_003634806.1\|	3.9e-07	60.42	PREDICTED: cysteine-rich and transmembrane domain-containing protein B-like [Vit...	[more]
gi\|357451841\|ref\|XP_003596197.1\|	3.9e-07	52.63	cysteine-rich TM module stress tolerance protein [Medicago truncatula]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G010850.1	CmaCh19G010850.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh19G010850	CmoCh19G011140	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G010850	CsaV3_7G022690	Cucumber (Chinese Long) v3	cmacucB0640
CmaCh19G010850	Carg04672	Silver-seed gourd	carcmaB0547
CmaCh19G010850	Carg15671	Silver-seed gourd	carcmaB0745

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G010850	Cucumber (Chinese Long) v3	cmacucB0633
CmaCh19G010850	Watermelon (97103) v2	cmawmbB528
CmaCh19G010850	Watermelon (97103) v2	cmawmbB547
CmaCh19G010850	Wax gourd	cmawgoB0654
CmaCh19G010850	Wax gourd	cmawgoB0666
CmaCh19G010850	Cucurbita maxima (Rimu)	cmacmaB148
CmaCh19G010850	Cucurbita maxima (Rimu)	cmacmaB442
CmaCh19G010850	Cucurbita maxima (Rimu)	cmacmaB454
CmaCh19G010850	Cucumber (Gy14) v1	cgycmaB0298
CmaCh19G010850	Cucumber (Gy14) v1	cgycmaB0667
CmaCh19G010850	Cucurbita moschata (Rifu)	cmacmoB492
CmaCh19G010850	Cucurbita moschata (Rifu)	cmacmoB514
CmaCh19G010850	Cucurbita moschata (Rifu)	cmacmoB526
CmaCh19G010850	Wild cucumber (PI 183967)	cmacpiB528
CmaCh19G010850	Wild cucumber (PI 183967)	cmacpiB535
CmaCh19G010850	Cucumber (Chinese Long) v2	cmacuB522
CmaCh19G010850	Cucumber (Chinese Long) v2	cmacuB529
CmaCh19G010850	Melon (DHL92) v3.5.1	cmameB464
CmaCh19G010850	Melon (DHL92) v3.5.1	cmameB452
CmaCh19G010850	Watermelon (Charleston Gray)	cmawcgB439
CmaCh19G010850	Watermelon (Charleston Gray)	cmawcgB458
CmaCh19G010850	Watermelon (97103) v1	cmawmB470
CmaCh19G010850	Watermelon (97103) v1	cmawmB500
CmaCh19G010850	Cucurbita pepo (Zucchini)	cmacpeB522
CmaCh19G010850	Cucurbita pepo (Zucchini)	cmacpeB527
CmaCh19G010850	Cucurbita pepo (Zucchini)	cmacpeB537
CmaCh19G010850	Cucurbita pepo (Zucchini)	cmacpeB546
CmaCh19G010850	Bottle gourd (USVL1VR-Ls)	cmalsiB471
CmaCh19G010850	Bottle gourd (USVL1VR-Ls)	cmalsiB474
CmaCh19G010850	Cucumber (Gy14) v2	cgybcmaB783
CmaCh19G010850	Cucumber (Gy14) v2	cgybcmaB946
CmaCh19G010850	Melon (DHL92) v3.6.1	cmamedB522
CmaCh19G010850	Melon (DHL92) v3.6.1	cmamedB537
CmaCh19G010850	Silver-seed gourd	carcmaB0039
CmaCh19G010850	Silver-seed gourd	carcmaB0471