CmaCh19G010790 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G010790
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPentatricopeptide repeat-containing family protein
LocationCma_Chr19 : 9002545 .. 9004300 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTCGATGGCGTTGCCTGGAATTCCATGATTATGTGTGTGGCTAAATGTGGGGAAATTGGGGAGTCGAGGAAGCTGTTCGATAAAATGCCTGTTAGAAACCCGATCTCTTGGAATTCTATGATTGGTGGGTATGTTAGAAATGGGATGTTCAAAGAAGCTCTCAAGCTGTTTGTCAAAATGCAAGAAGAGAGAATCCAGCCTAGTGAGTTTACTATGGTGAGCTTGTTAAATGCTTCAACTCAAATTGGAGCACTTTCGGCAGGAGGAATGAATAACGAGTACATAAAGAAGAACAATTTAGAGTTGAGTGCCAATGTAGCAACAGCGATAATTGACATGTACAGCAAGCATAGGGAAGGCCCTTCAGGTGTTTGAGAAAATGCCCAACAGAGGTTATTTAGTTGGAATTCCATGATCTTTGGCCTTGCAGTGAATGGCTGCGAAAAGGAAGTAGTCTCAAACCAGATTCTGTTAGCTTTATGGAGAACGAAGGCAGCGGATTTTTCTCACTGACAAAAAACACATACAGAATTGATCCATCAACAAAACACTACAATTTAACGGTGGACATGTTCAGCCGAGCTGGGTTTCTTGAAGAAGCAGAGCAGCTCCTAAAAACCATGCCAATTAAGGCAGTTACAGTCATACGAGGGGTCACAGTTTGTAGAACATATGAGAACACAGAGATGGTGAAGAGGGCAGCAGAAAAAGTTAATGAACGGGTTATATTCTTATGGAGGATGTTCATGCTTGACGATGAAGGTCTGACGGAAGCGCAGGCAGAGTTTACCGGTACGATTAGGCCTGACATTTTGGCCCAAACGTTGCCTTGGGCTCGAACTGTAAGGAAGCATAGACAACTGGGCCTGGAATTTCAGCCCAAATGTTGTCCAGGGCTGGAAGTCAAGGAAGTATGGATAATTGGGCCTAAGATTTCAGCCCAAATAATTGGGCTAGGGCTGCCCAGTTCCCACACACGCACGCTCTTCTCACGTGTTCTACCTCCTTCTATCTTCAATTCGAATTTCTAAATTCTATAGCAGCAGCAGCCTCTCCTCTTTGTAGAGGGAAAGTAGTAAGGTTTCGGTTGGGTTCGGCTTGGATTGAGTGGCTTCTTGAAGGAATGACCGGTCGGTTCTCCAGTTCAAGGGGAAATTTTCGGGTCAGATCGAACCGCACCGGTTATATATATATTTAAGGGTTTTACGTGCCTTCAATTGTTCATTTTCTTCGGCCTTCACTTCCGTCTTCCGATTCCACTAGGCACCAAATCAGTCGCAGCGCCAGAGCTCTCCCTCGTTCGTTCTCTTCTCCCCGCCTGGTCGCCGTGCCACTCGCCCTCGTTCGTCGTTGCCTCCTCTTCTCCTCTTCTCCCCTTGACTCGCCGTCGTTCCTCGTCTCTTCATATCAGACTTCAACCTTCAGCCGACCGTCGCCATCGCCTCAAAACTTTTTACTCTTCTTTCTCTGCAGTCAGCCACCGTCCACTGCCAGCGCCGGTAACATTTACTCTCCTCAAAATTTCTTTTTGATCTTTTAGCTCAAGTCTTTCCTGTACCCAATGATTTTAGTCACAAGGTTTGTTGGTTTCTACTGTACAGATACCTGGGGTTTTGTCGAAACTTTGTCCAGCATTTTTTATTCATTGTGTTCACTGTTATTGTTTATGCATTTTGTGTTGGGAATGGTTTCAGATAGCCCGGTTTTCATTATTTTTGAAGCTCAATCAACGAAACAACAAAGAAAGTGA

mRNA sequence

ATGGAATTCGATGGCGTTGCCTGGAATTCCATGATTATGTGTGTGGCTAAATGTGGGGAAATTGGGGAGTCGAGGAAGCTGTTCGATAAAATGCCTGTTAGAAACCCGATCTCTTGGAATTCTATGATTGGTGGGTATGTTAGAAATGGGATGTTCAAAGAAGCTCTCAAGCTGTTTGTCAAAATGCAAGAAGAGAGAATCCAGCCTAGTGAGTTTACTATGGTGAGCTTGTTAAATGCTTCAACTCAAATTGGAGCACTTTCGGCAGGAGGAATGAATAACGAGTACATAAAGAAGAACAATTTAGAGTTGAGTGCCAATGTAGCAACAGCGATAATTGACATTGAATGGCTGCGAAAAGGAAGTAGTCTCAAACCAGATTCTGTTAGCTTTATGGAGAACGAAGGCAGCGGATTTTTCTCACTGACAAAAAACACATACAGAATTGATCCATCAACAAAACACTACAATTTAACGGTGGACATGTTCAGCCGAGCTGGGTTTCTTGAAGAAGCAGAGCAGCTCCTAAAAACCATGCCAATTAAGGCAGTTACAGTCATACGAGGGGTCACAGTTTGTAGAACATATGAGAACACAGAGATGGTGAAGAGGGCAGCAGAAAAAGTTAATGAACGGGTTATATTCTTATGGAGGATGTTCATGCTTGACGATGAAGGTCTGACGGAAGCGCAGGCAGAGTTTACCGGGTTTTACGTGCCTTCAATTGTTCATTTTCTTCGGCCTTCACTTCCGTCTTCCGATTCCACTAGGCACCAAATCAGTCGCAGCGCCAGAGCTCTCCCTCGTTCGTTCTCTTCTCCCCGCCTGGTCGCCGTGCCACTCGCCCTCGTTCGTCGTTGCCTCCTCTTCTCCTCTTCTCCCCTTGACTCGCCGTCGTTCCTCGTCTCTTCATATCAGACTTCAACCTTCAGCCGACCGTCGCCATCGCCTCAAAACTTTTTACTCTTCTTTCTCTGCAGTCAGCCACCGTCCACTGCCAGCGCCGATAGCCCGGTTTTCATTATTTTTGAAGCTCAATCAACGAAACAACAAAGAAAGTGA

Coding sequence (CDS)

ATGGAATTCGATGGCGTTGCCTGGAATTCCATGATTATGTGTGTGGCTAAATGTGGGGAAATTGGGGAGTCGAGGAAGCTGTTCGATAAAATGCCTGTTAGAAACCCGATCTCTTGGAATTCTATGATTGGTGGGTATGTTAGAAATGGGATGTTCAAAGAAGCTCTCAAGCTGTTTGTCAAAATGCAAGAAGAGAGAATCCAGCCTAGTGAGTTTACTATGGTGAGCTTGTTAAATGCTTCAACTCAAATTGGAGCACTTTCGGCAGGAGGAATGAATAACGAGTACATAAAGAAGAACAATTTAGAGTTGAGTGCCAATGTAGCAACAGCGATAATTGACATTGAATGGCTGCGAAAAGGAAGTAGTCTCAAACCAGATTCTGTTAGCTTTATGGAGAACGAAGGCAGCGGATTTTTCTCACTGACAAAAAACACATACAGAATTGATCCATCAACAAAACACTACAATTTAACGGTGGACATGTTCAGCCGAGCTGGGTTTCTTGAAGAAGCAGAGCAGCTCCTAAAAACCATGCCAATTAAGGCAGTTACAGTCATACGAGGGGTCACAGTTTGTAGAACATATGAGAACACAGAGATGGTGAAGAGGGCAGCAGAAAAAGTTAATGAACGGGTTATATTCTTATGGAGGATGTTCATGCTTGACGATGAAGGTCTGACGGAAGCGCAGGCAGAGTTTACCGGGTTTTACGTGCCTTCAATTGTTCATTTTCTTCGGCCTTCACTTCCGTCTTCCGATTCCACTAGGCACCAAATCAGTCGCAGCGCCAGAGCTCTCCCTCGTTCGTTCTCTTCTCCCCGCCTGGTCGCCGTGCCACTCGCCCTCGTTCGTCGTTGCCTCCTCTTCTCCTCTTCTCCCCTTGACTCGCCGTCGTTCCTCGTCTCTTCATATCAGACTTCAACCTTCAGCCGACCGTCGCCATCGCCTCAAAACTTTTTACTCTTCTTTCTCTGCAGTCAGCCACCGTCCACTGCCAGCGCCGATAGCCCGGTTTTCATTATTTTTGAAGCTCAATCAACGAAACAACAAAGAAAGTGA

Protein sequence

MEFDGVAWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDIEWLRKGSSLKPDSVSFMENEGSGFFSLTKNTYRIDPSTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKAVTVIRGVTVCRTYENTEMVKRAAEKVNERVIFLWRMFMLDDEGLTEAQAEFTGFYVPSIVHFLRPSLPSSDSTRHQISRSARALPRSFSSPRLVAVPLALVRRCLLFSSSPLDSPSFLVSSYQTSTFSRPSPSPQNFLLFFLCSQPPSTASADSPVFIIFEAQSTKQQRK
Homology
[Close]
BLAST of CmaCh19G010790 vs. Swiss-Prot
Match: PP200_ARATH (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.1e-30
Identity = 65/113 (57.52%), Postives = 84/113 (74.34%), Query Frame = 1 

Query: 3   FDGVAWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFVKM 62
           FD VAWNSMIM  AKCG I +++ LFD+MP RN +SWNSMI G+VRNG FK+AL +F +M
Sbjct: 190 FDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREM 249

Query: 63  QEERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDI 116
           QE+ ++P  FTMVSLLNA   +GA   G   +EYI +N  EL++ V TA+ID+
Sbjct: 250 QEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDM 302

[Close]
BLAST of CmaCh19G010790 vs. Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.7e-21
Identity = 53/114 (46.49%), Postives = 77/114 (67.54%), Query Frame = 1 

Query: 7   AWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFVKMQ--- 66
           AWNS++   AK G I ++RKLFD+MP RN ISW+ +I GYV  G +KEAL LF +MQ   
Sbjct: 130 AWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPK 189

Query: 67  --EERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDI 116
             E  ++P+EFTM ++L+A  ++GAL  G   + YI K ++E+   + TA+ID+
Sbjct: 190 PNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDM 243

[Close]
BLAST of CmaCh19G010790 vs. Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.5e-20
Identity = 45/112 (40.18%), Postives = 76/112 (67.86%), Query Frame = 1 

Query: 4   DGVAWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFVKMQ 63
           D V   +M+   A+CG++  +RKLF+ MP R+PI+WN+MI GY + G  +EAL +F  MQ
Sbjct: 173 DFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQ 232

Query: 64  EERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDI 116
            E ++ +   M+S+L+A TQ+GAL  G   + YI++N ++++  +AT ++D+
Sbjct: 233 LEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDL 284

[Close]
BLAST of CmaCh19G010790 vs. Swiss-Prot
Match: PP367_ARATH (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.4e-19
Identity = 42/114 (36.84%), Postives = 73/114 (64.04%), Query Frame = 1 

Query: 4   DGVAWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFVKMQ 63
           D V+W SM+    KCG +  +R++FD+MP RN  +W+ MI GY +N  F++A+ LF  M+
Sbjct: 182 DVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMK 241

Query: 64  EERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDIEW 118
            E +  +E  MVS++++   +GAL  G    EY+ K+++ ++  + TA++D+ W
Sbjct: 242 REGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFW 295

[Close]
BLAST of CmaCh19G010790 vs. Swiss-Prot
Match: PP235_ARATH (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 1.6e-18
Identity = 50/126 (39.68%), Postives = 74/126 (58.73%), Query Frame = 1 

Query: 4   DGVAWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFVKMQ 63
           D ++W S++    + G +  +R  FD+MPVR+ ISW  MI GY+R G F E+L++F +MQ
Sbjct: 301 DVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQ 360

Query: 64  EERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDIEWLRKGSS 123
              + P EFTMVS+L A   +G+L  G     YI KN ++    V  A+ID+ + + G S
Sbjct: 361 SAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDM-YFKCGCS 420

Query: 124 LKPDSV 130
            K   V
Sbjct: 421 EKAQKV 425

[Close]
BLAST of CmaCh19G010790 vs. TrEMBL
Match: A0A0A0K7F6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G235760 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.4e-45
Identity = 95/115 (82.61%), Postives = 104/115 (90.43%), Query Frame = 1 

Query: 1   MEFDGVAWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFV 60
           MEFD V+WNSMI+ +AKCGEI ESRKLFDKMPV+NPISWNSMIGGYVRNGMFKEALKLF+
Sbjct: 186 MEFDVVSWNSMILGLAKCGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFI 245

Query: 61  KMQEERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDI 116
           KMQEERIQPSEFTMVSLLNAS QIGAL  G   +EYIKKNNL+L+A V TAIID+
Sbjct: 246 KMQEERIQPSEFTMVSLLNASAQIGALRQGVWIHEYIKKNNLQLNAIVVTAIIDM 300

[Close]
BLAST of CmaCh19G010790 vs. TrEMBL
Match: F6H5C7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g00060 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 9.1e-37
Identity = 78/115 (67.83%), Postives = 95/115 (82.61%), Query Frame = 1 

Query: 1   MEFDGVAWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFV 60
           M+FD VAWNSMIM +AKCGE+ ESRKLFD+MP+RN +SWNSMI GYVRNG  +EAL LF 
Sbjct: 151 MDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFG 210

Query: 61  KMQEERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDI 116
           +MQEERI+PSEFTMVSLLNAS ++GAL  G   ++YI+KNN EL+  V  +IID+
Sbjct: 211 QMQEERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDM 265

[Close]
BLAST of CmaCh19G010790 vs. TrEMBL
Match: W9RHE2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000760 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.2e-33
Identity = 80/128 (62.50%), Postives = 98/128 (76.56%), Query Frame = 1 

Query: 2   EFDGVAWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFVK 61
           E D VAWNSMIM ++KCGE+GESR+LFD+MP+RN +SWNSMI GYVRNG   EAL+LF K
Sbjct: 189 ELDLVAWNSMIMGLSKCGEVGESRRLFDRMPLRNSVSWNSMISGYVRNGKCVEALELFGK 248

Query: 62  MQEERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDIEWLRKG 121
           MQ E I+ SEFTMVSLLNAS ++GA+  G   +EYI KN +EL+  V TAIID+ + + G
Sbjct: 249 MQGEGIKASEFTMVSLLNASGRLGAIRQGEWIHEYITKNGIELNVIVVTAIIDM-YCKCG 308

Query: 122 SSLKPDSV 130
           S  K  SV
Sbjct: 309 SVNKALSV 315

[Close]
BLAST of CmaCh19G010790 vs. TrEMBL
Match: A0A061DLR3_THECC (Pentatricopeptide repeat (PPR-like) superfamily protein OS=Theobroma cacao GN=TCM_001877 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.0e-32
Identity = 74/115 (64.35%), Postives = 90/115 (78.26%), Query Frame = 1 

Query: 1   MEFDGVAWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFV 60
           ME D VAWNSMI+ +AKCGE+ ESR+LF+KM  RN +SWNSMI GYVRNG F EAL+LF 
Sbjct: 185 MELDIVAWNSMIIGLAKCGEVDESRRLFNKMVSRNTVSWNSMISGYVRNGRFLEALELFQ 244

Query: 61  KMQEERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDI 116
           +MQEE I+PSEFTMVSLLNA   +GA++ G   ++YI K N EL+  V TAIID+
Sbjct: 245 EMQEEHIRPSEFTMVSLLNACACLGAITQGKWIHDYILKQNFELNGIVVTAIIDM 299

[Close]
BLAST of CmaCh19G010790 vs. TrEMBL
Match: A0A059DH34_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01980 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.4e-32
Identity = 75/121 (61.98%), Postives = 94/121 (77.69%), Query Frame = 1 

Query: 2   EFDGVAWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFVK 61
           E D VAWNSMIM +AKCGEI ESR+LFD+ P+RN I+W+SMI GYVRNG F +A+KLF +
Sbjct: 152 ERDVVAWNSMIMGLAKCGEIDESRRLFDQAPLRNAITWSSMISGYVRNGRFVDAMKLFEE 211

Query: 62  MQEERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDIEWLRKG 121
           MQE  I+P+EFT+VSLLNAS  +GAL  G   +EYIKK   +L+A + TAIID+ + R G
Sbjct: 212 MQERGIEPNEFTLVSLLNASAHLGALKQGQWVHEYIKKGGAQLNAIITTAIIDM-YCRCG 271

Query: 122 S 123
           S
Sbjct: 272 S 271

[Close]
BLAST of CmaCh19G010790 vs. TAIR10
Match: AT2G42920.1 (AT2G42920.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-31
Identity = 65/113 (57.52%), Postives = 84/113 (74.34%), Query Frame = 1 

Query: 3   FDGVAWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFVKM 62
           FD VAWNSMIM  AKCG I +++ LFD+MP RN +SWNSMI G+VRNG FK+AL +F +M
Sbjct: 190 FDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREM 249

Query: 63  QEERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDI 116
           QE+ ++P  FTMVSLLNA   +GA   G   +EYI +N  EL++ V TA+ID+
Sbjct: 250 QEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDM 302

[Close]
BLAST of CmaCh19G010790 vs. TAIR10
Match: AT3G62890.1 (AT3G62890.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 102.8 bits (255), Expect = 4.3e-22
Identity = 53/114 (46.49%), Postives = 77/114 (67.54%), Query Frame = 1 

Query: 7   AWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFVKMQ--- 66
           AWNS++   AK G I ++RKLFD+MP RN ISW+ +I GYV  G +KEAL LF +MQ   
Sbjct: 130 AWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPK 189

Query: 67  --EERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDI 116
             E  ++P+EFTM ++L+A  ++GAL  G   + YI K ++E+   + TA+ID+
Sbjct: 190 PNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDM 243

[Close]
BLAST of CmaCh19G010790 vs. TAIR10
Match: AT5G40405.1 (AT5G40405.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 99.8 bits (247), Expect = 3.7e-21
Identity = 45/112 (40.18%), Postives = 76/112 (67.86%), Query Frame = 1 

Query: 4   DGVAWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFVKMQ 63
           D V   +M+   A+CG++  +RKLF+ MP R+PI+WN+MI GY + G  +EAL +F  MQ
Sbjct: 173 DFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQ 232

Query: 64  EERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDI 116
            E ++ +   M+S+L+A TQ+GAL  G   + YI++N ++++  +AT ++D+
Sbjct: 233 LEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDL 284

[Close]
BLAST of CmaCh19G010790 vs. TAIR10
Match: AT5G06540.1 (AT5G06540.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 95.9 bits (237), Expect = 5.3e-20
Identity = 42/114 (36.84%), Postives = 73/114 (64.04%), Query Frame = 1 

Query: 4   DGVAWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFVKMQ 63
           D V+W SM+    KCG +  +R++FD+MP RN  +W+ MI GY +N  F++A+ LF  M+
Sbjct: 182 DVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMK 241

Query: 64  EERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDIEW 118
            E +  +E  MVS++++   +GAL  G    EY+ K+++ ++  + TA++D+ W
Sbjct: 242 REGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFW 295

[Close]
BLAST of CmaCh19G010790 vs. TAIR10
Match: AT3G15930.1 (AT3G15930.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 95.1 bits (235), Expect = 9.0e-20
Identity = 50/126 (39.68%), Postives = 74/126 (58.73%), Query Frame = 1 

Query: 4   DGVAWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFVKMQ 63
           D ++W S++    + G +  +R  FD+MPVR+ ISW  MI GY+R G F E+L++F +MQ
Sbjct: 301 DVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQ 360

Query: 64  EERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDIEWLRKGSS 123
              + P EFTMVS+L A   +G+L  G     YI KN ++    V  A+ID+ + + G S
Sbjct: 361 SAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDM-YFKCGCS 420

Query: 124 LKPDSV 130
            K   V
Sbjct: 421 EKAQKV 425

[Close]
BLAST of CmaCh19G010790 vs. NCBI nr
Match: gi|449467271|ref|XP_004151347.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 2.0e-45
Identity = 95/115 (82.61%), Postives = 104/115 (90.43%), Query Frame = 1 

Query: 1   MEFDGVAWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFV 60
           MEFD V+WNSMI+ +AKCGEI ESRKLFDKMPV+NPISWNSMIGGYVRNGMFKEALKLF+
Sbjct: 186 MEFDVVSWNSMILGLAKCGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFI 245

Query: 61  KMQEERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDI 116
           KMQEERIQPSEFTMVSLLNAS QIGAL  G   +EYIKKNNL+L+A V TAIID+
Sbjct: 246 KMQEERIQPSEFTMVSLLNASAQIGALRQGVWIHEYIKKNNLQLNAIVVTAIIDM 300

[Close]
BLAST of CmaCh19G010790 vs. NCBI nr
Match: gi|659092604|ref|XP_008447140.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 1.3e-44
Identity = 94/115 (81.74%), Postives = 103/115 (89.57%), Query Frame = 1 

Query: 1   MEFDGVAWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFV 60
           MEFD V+WNSMI+ +AKCGEI ESRKLFDKMPV+N ISWNSMIGGYVRNGMFKEALKLF+
Sbjct: 186 MEFDVVSWNSMILGLAKCGEIDESRKLFDKMPVKNSISWNSMIGGYVRNGMFKEALKLFI 245

Query: 61  KMQEERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDI 116
           KMQEERIQPSEFTMVSLLNAS QIGAL  G   +EYIKKNNL+L+A V TAIID+
Sbjct: 246 KMQEERIQPSEFTMVSLLNASAQIGALRQGEWIHEYIKKNNLQLNAIVVTAIIDM 300

[Close]
BLAST of CmaCh19G010790 vs. NCBI nr
Match: gi|225446849|ref|XP_002279693.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Vitis vinifera])

HSP 1 Score: 162.5 bits (410), Expect = 1.3e-36
Identity = 78/115 (67.83%), Postives = 95/115 (82.61%), Query Frame = 1 

Query: 1   MEFDGVAWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFV 60
           M+FD VAWNSMIM +AKCGE+ ESRKLFD+MP+RN +SWNSMI GYVRNG  +EAL LF 
Sbjct: 187 MDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFG 246

Query: 61  KMQEERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDI 116
           +MQEERI+PSEFTMVSLLNAS ++GAL  G   ++YI+KNN EL+  V  +IID+
Sbjct: 247 QMQEERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDM 301

[Close]
BLAST of CmaCh19G010790 vs. NCBI nr
Match: gi|1009126437|ref|XP_015880153.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 161.8 bits (408), Expect = 2.2e-36
Identity = 76/115 (66.09%), Postives = 96/115 (83.48%), Query Frame = 1 

Query: 1   MEFDGVAWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFV 60
           +E+D VAWNSMIM ++KCGE+GESR+LFDKMP++N +SWNSMI GYVRNGMF EAL+LF 
Sbjct: 184 LEYDVVAWNSMIMGLSKCGEVGESRRLFDKMPLKNSVSWNSMISGYVRNGMFIEALELFG 243

Query: 61  KMQEERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDI 116
           KMQEERI+PSE+TMVSLLNA   +GA+  G   ++YI+KN +EL+    TAIID+
Sbjct: 244 KMQEERIKPSEYTMVSLLNACGSLGAIRQGKWIHDYIRKNGIELNVLAITAIIDM 298

[Close]
BLAST of CmaCh19G010790 vs. NCBI nr
Match: gi|470140203|ref|XP_004305832.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 161.0 bits (406), Expect = 3.8e-36
Identity = 77/115 (66.96%), Postives = 98/115 (85.22%), Query Frame = 1 

Query: 1   MEFDGVAWNSMIMCVAKCGEIGESRKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFV 60
           +EFD VAWNSMIM ++KCGE+GESR+LFDKMP RN ISWNSMIGG VRNGM+ EAL LF 
Sbjct: 183 LEFDIVAWNSMIMGLSKCGEVGESRRLFDKMPQRNSISWNSMIGGSVRNGMYTEALDLFG 242

Query: 61  KMQEERIQPSEFTMVSLLNASTQIGALSAGGMNNEYIKKNNLELSANVATAIIDI 116
           +MQ+++I+PSEFTMVSLLNAS Q+GA+  G   +EYI+KN+++L+  V TAII++
Sbjct: 243 EMQKQKIKPSEFTMVSLLNASAQLGAIRQGEWIHEYIRKNHIQLNPIVVTAIINM 297

The following BLAST results are available for this feature:
BLAST of CmaCh19G010790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP200_ARATH3.1e-3057.52Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop... [more]
PP295_ARATH7.7e-2146.49Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN... [more]
PP410_ARATH6.5e-2040.18Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis th... [more]
PP367_ARATH9.4e-1936.84Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN... [more]
PP235_ARATH1.6e-1839.68Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis th... [more]
BLAST of CmaCh19G010790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7F6_CUCSA1.4e-4582.61Uncharacterized protein OS=Cucumis sativus GN=Csa_7G235760 PE=4 SV=1[more]
F6H5C7_VITVI9.1e-3767.83Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g00060 PE=4 SV=... [more]
W9RHE2_9ROSA1.2e-3362.50Uncharacterized protein OS=Morus notabilis GN=L484_000760 PE=4 SV=1[more]
A0A061DLR3_THECC1.0e-3264.35Pentatricopeptide repeat (PPR-like) superfamily protein OS=Theobroma cacao GN=TC... [more]
A0A059DH34_EUCGR1.4e-3261.98Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01980 PE=4 SV=1[more]
BLAST of CmaCh19G010790 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G42920.11.8e-3157.52 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT3G62890.14.3e-2246.49 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G40405.13.7e-2140.18 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G06540.15.3e-2036.84 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G15930.19.0e-2039.68 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of CmaCh19G010790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449467271|ref|XP_004151347.1|2.0e-4582.61PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic ... [more]
gi|659092604|ref|XP_008447140.1|1.3e-4481.74PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic ... [more]
gi|225446849|ref|XP_002279693.1|1.3e-3667.83PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic ... [more]
gi|1009126437|ref|XP_015880153.1|2.2e-3666.09PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic ... [more]
gi|470140203|ref|XP_004305832.1|3.8e-3666.96PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G010790.1CmaCh19G010790.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 156..179
score: 0.024coord: 6..33
score: 2.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 35..80
score: 1.9
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 6..32
score: 0.0015coord: 37..71
score: 1.3
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 4..34
score: 8.912coord: 152..186
score: 8.539coord: 35..69
score: 13
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..211
score: 1.3
NoneNo IPR availablePANTHERPTHR24015:SF485SUBFAMILY NOT NAMEDcoord: 1..211
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh19G010790ClCG09G022480Watermelon (Charleston Gray)cmawcgB439
CmaCh19G010790CmoCh11G020430Cucurbita moschata (Rifu)cmacmoB492
CmaCh19G010790CmoCh19G011060Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G010790Cp4.1LG04g02490Cucurbita pepo (Zucchini)cmacpeB537
CmaCh19G010790Cp4.1LG15g08790Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G010790MELO3C029095.2Melon (DHL92) v3.6.1cmamedB537
CmaCh19G010790CsaV3_7G022620Cucumber (Chinese Long) v3cmacucB0640
CmaCh19G010790Cla97C09G184000Watermelon (97103) v2cmawmbB547
CmaCh19G010790CsGy7G009990Cucumber (Gy14) v2cgybcmaB946
CmaCh19G010790Carg04667Silver-seed gourdcarcmaB0547
CmaCh19G010790Carg15677Silver-seed gourdcarcmaB0745
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh19G010790CmaCh11G019600Cucurbita maxima (Rimu)cmacmaB148
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G010790Cucumber (Chinese Long) v3cmacucB0633
CmaCh19G010790Watermelon (97103) v2cmawmbB528
CmaCh19G010790Wax gourdcmawgoB0654
CmaCh19G010790Wax gourdcmawgoB0666
CmaCh19G010790Cucurbita maxima (Rimu)cmacmaB442
CmaCh19G010790Cucurbita maxima (Rimu)cmacmaB454
CmaCh19G010790Cucumber (Gy14) v1cgycmaB0298
CmaCh19G010790Cucurbita moschata (Rifu)cmacmoB514
CmaCh19G010790Cucurbita moschata (Rifu)cmacmoB526
CmaCh19G010790Wild cucumber (PI 183967)cmacpiB528
CmaCh19G010790Wild cucumber (PI 183967)cmacpiB535
CmaCh19G010790Cucumber (Chinese Long) v2cmacuB522
CmaCh19G010790Cucumber (Chinese Long) v2cmacuB529
CmaCh19G010790Melon (DHL92) v3.5.1cmameB464
CmaCh19G010790Melon (DHL92) v3.5.1cmameB452
CmaCh19G010790Watermelon (Charleston Gray)cmawcgB458
CmaCh19G010790Watermelon (97103) v1cmawmB470
CmaCh19G010790Watermelon (97103) v1cmawmB500
CmaCh19G010790Cucurbita pepo (Zucchini)cmacpeB527
CmaCh19G010790Cucurbita pepo (Zucchini)cmacpeB546
CmaCh19G010790Bottle gourd (USVL1VR-Ls)cmalsiB471
CmaCh19G010790Bottle gourd (USVL1VR-Ls)cmalsiB474
CmaCh19G010790Cucumber (Gy14) v2cgybcmaB783
CmaCh19G010790Melon (DHL92) v3.6.1cmamedB522
CmaCh19G010790Silver-seed gourdcarcmaB0039
CmaCh19G010790Silver-seed gourdcarcmaB0471