CmaCh19G009620 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G009620
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Wound-responsive family protein
Location	Cma_Chr19 : 8469470 .. 8469727 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCGTCGAGAAGAGCTTGGGTCGTAGCGGCCAGTGTTGGGGTGGTGGAGGCCTTAAAAGATCAAGGGGTTTGCCGGTGGAATCATACGATTAAATCGGTTCAGCAGTACGCCAAAAACCACGTTAGATCGGTTTCTCAGGCGAAGAAGCTTTCTTCTACGTCGACTGCGGCGGTTTCCGATCAGAAATGGAAGCAGTCGGAGGAGTCTTTGAGGACTGTCATGTACTTGAGCTGTTGGGGGCCCAATAACTAA

mRNA sequence

ATGAGTTCGTCGAGAAGAGCTTGGGTCGTAGCGGCCAGTGTTGGGGTGGTGGAGGCCTTAAAAGATCAAGGGGTTTGCCGGTGGAATCATACGATTAAATCGGTTCAGCAGTACGCCAAAAACCACGTTAGATCGGTTTCTCAGGCGAAGAAGCTTTCTTCTACGTCGACTGCGGCGGTTTCCGATCAGAAATGGAAGCAGTCGGAGGAGTCTTTGAGGACTGTCATGTACTTGAGCTGTTGGGGGCCCAATAACTAA

Coding sequence (CDS)

ATGAGTTCGTCGAGAAGAGCTTGGGTCGTAGCGGCCAGTGTTGGGGTGGTGGAGGCCTTAAAAGATCAAGGGGTTTGCCGGTGGAATCATACGATTAAATCGGTTCAGCAGTACGCCAAAAACCACGTTAGATCGGTTTCTCAGGCGAAGAAGCTTTCTTCTACGTCGACTGCGGCGGTTTCCGATCAGAAATGGAAGCAGTCGGAGGAGTCTTTGAGGACTGTCATGTACTTGAGCTGTTGGGGGCCCAATAACTAA

Protein sequence

MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAVSDQKWKQSEESLRTVMYLSCWGPNN

Homology

[Close]

BLAST of CmaCh19G009620 vs. TrEMBL
Match: A0A0A0K3P5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046670 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.3e-34
Identity = 73/85 (85.88%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAV 60
          MS  R+ WVVAASVGVVEALKDQG+CRWNHTI+S+QQYAKNHVRS+SQAKKLSS S AAV
Sbjct: 1  MSCCRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAAAV 60

Query: 61 SDQKWKQSEESLRTVMYLSCWGPNN 86
          SD KW QSEESLRTVMYLSCWGPNN
Sbjct: 61 SDHKWNQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of CmaCh19G009620 vs. TrEMBL
Match: A0A0D2PKH2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G206000 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-28
Identity = 66/86 (76.74%), Postives = 76/86 (88.37%), Query Frame = 1


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAV 60
          MSS+ RAWVVAAS+G VEALKDQG+CRWN+T++SV Q+AKNHVRS SQAK LSS S+AA+
Sbjct: 1  MSSTSRAWVVAASIGAVEALKDQGICRWNYTVRSVVQHAKNHVRSASQAKNLSSQSSAAI 60

Query: 61 SD--QKWKQSEESLRTVMYLSCWGPN 85
          S    K+KQSEESLRTVMYLSCWGPN
Sbjct: 61 SKGLNKYKQSEESLRTVMYLSCWGPN 86

[Close]

BLAST of CmaCh19G009620 vs. TrEMBL
Match: A0A0D2N5Q5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G205900 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.1e-28
Identity = 66/86 (76.74%), Postives = 75/86 (87.21%), Query Frame = 1


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAV 60
          MSSS RAW+VAAS+G VEALKDQG+CRWN+T++SV Q+AKNHVRS SQAK LSS S+AA+
Sbjct: 1  MSSSSRAWIVAASIGAVEALKDQGICRWNYTVRSVVQHAKNHVRSASQAKNLSSQSSAAI 60

Query: 61 SD--QKWKQSEESLRTVMYLSCWGPN 85
          S    K KQSEESLRTVMYLSCWGPN
Sbjct: 61 SKGLNKSKQSEESLRTVMYLSCWGPN 86

[Close]

BLAST of CmaCh19G009620 vs. TrEMBL
Match: A0A0D2RIR4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G205800 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.0e-26
Identity = 61/86 (70.93%), Postives = 75/86 (87.21%), Query Frame = 1


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAV 60
          MSS+ RAW+VAAS+G VEALKDQG+CRWN+T++S  Q+AKNH+RS SQAK LSS S+AA+
Sbjct: 1  MSSTSRAWIVAASIGAVEALKDQGICRWNYTVRSAVQHAKNHMRSASQAKNLSSQSSAAI 60

Query: 61 SD--QKWKQSEESLRTVMYLSCWGPN 85
          S   ++ KQSEE+LRTVMYLSCWGPN
Sbjct: 61 SKGLRQSKQSEEALRTVMYLSCWGPN 86

[Close]

BLAST of CmaCh19G009620 vs. TrEMBL
Match: A0A0B0NEB0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_15200 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.9e-26
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 1


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAV 60
          MSS+ RAW+ AAS+G VEALKDQG+CRWN+T +SV Q+AKNHVRS SQAK LSS S+AA+
Sbjct: 1  MSSTSRAWIAAASIGAVEALKDQGICRWNYTARSVVQHAKNHVRSASQAKNLSSQSSAAI 60

Query: 61 SD--QKWKQSEESLRTVMYLSCWGPN 85
          S    + KQSEESLRTVMYLSCWGPN
Sbjct: 61 SKGLLQSKQSEESLRTVMYLSCWGPN 86

[Close]

BLAST of CmaCh19G009620 vs. TAIR10
Match: AT4G10265.1 (AT4G10265.1 Wound-responsive family protein)

HSP 1 Score: 109.8 bits (273), Expect = 8.5e-25
Identity = 57/85 (67.06%), Postives = 70/85 (82.35%), Query Frame = 1


Query: 1  MSSSRRAWVVAASVGVVEALKDQ-GVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAA 60
          MSS+ + W+VAAS+G VEALKDQ GVCRWN+ I+S  QY +N++RSVSQAKKLSS+S   
Sbjct: 1  MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDY 60

Query: 61 VSDQKWKQSEESLRTVMYLSCWGPN 85
           +  K KQ+EESLRTVMYLSCWGP+
Sbjct: 61 TN--KTKQAEESLRTVMYLSCWGPS 83

[Close]

BLAST of CmaCh19G009620 vs. TAIR10
Match: AT4G10270.1 (AT4G10270.1 Wound-responsive family protein)

HSP 1 Score: 106.7 bits (265), Expect = 7.2e-24
Identity = 54/90 (60.00%), Postives = 70/90 (77.78%), Query Frame = 1


Query: 1  MSSSRRAWVVAASVGVVEALKDQ-GVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAA 60
          MSS+ +AW VA S+G VEALKDQ G+CRWN+ ++SV Q+ +N+VRSVSQ K+ SS+S +A
Sbjct: 1  MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query: 61 V-----SDQKWKQSEESLRTVMYLSCWGPN 85
                  +K K++EESLRTVMYLSCWGPN
Sbjct: 61 AVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of CmaCh19G009620 vs. TAIR10
Match: AT4G33560.1 (AT4G33560.1 Wound-responsive family protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.4e-06
Identity = 28/88 (31.82%), Postives = 47/88 (53.41%), Query Frame = 1


Query: 2  SSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKK----LSSTST 61
          +  + +W VA ++  VE LKDQGV RWN+  + + + A   VR+++   +     SS+S 
Sbjct: 3  AGKQASWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSA 62

Query: 62 AAVSDQKWKQS--EESLRTVMYLSCWGP 84
           ++  +    +  E S    M LSC+GP
Sbjct: 63 TSIRSKPLSTTPFETSFEKAMGLSCFGP 90

[Close]

BLAST of CmaCh19G009620 vs. NCBI nr
Match: gi|659110681|ref|XP_008455355.1| (PREDICTED: uncharacterized protein LOC103495542 [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 1.5e-34
Identity = 73/85 (85.88%), Postives = 79/85 (92.94%), Query Frame = 1


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAV 60
          MS SR+ WVVAASVGVVEALKDQG+CRWNHTI+S+QQYAKNHVRS+SQAKKLSS S A V
Sbjct: 1  MSCSRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAATV 60

Query: 61 SDQKWKQSEESLRTVMYLSCWGPNN 86
          SD +WKQSEESLRTVMYLSCWGPNN
Sbjct: 61 SDHRWKQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of CmaCh19G009620 vs. NCBI nr
Match: gi|449438062|ref|XP_004136809.1| (PREDICTED: uncharacterized protein LOC101202743 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 3.3e-34
Identity = 73/85 (85.88%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAV 60
          MS  R+ WVVAASVGVVEALKDQG+CRWNHTI+S+QQYAKNHVRS+SQAKKLSS S AAV
Sbjct: 1  MSCCRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAAAV 60

Query: 61 SDQKWKQSEESLRTVMYLSCWGPNN 86
          SD KW QSEESLRTVMYLSCWGPNN
Sbjct: 61 SDHKWNQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of CmaCh19G009620 vs. NCBI nr
Match: gi|778723985|ref|XP_011658732.1| (PREDICTED: uncharacterized protein LOC101213259 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 3.2e-29
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 1


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAV 60
          MSSSRRAW+VAASVGVVEALKDQG+CRWNHTI+S  QYAKNHVRSV QA +L+ +S A V
Sbjct: 1  MSSSRRAWIVAASVGVVEALKDQGICRWNHTIRSAHQYAKNHVRSVPQATRLTGSSAAVV 60

Query: 61 SD-QKWKQSEESLRTVMYLSCWGPN 85
          S  Q+ KQSEESLRTVMYLSCWGPN
Sbjct: 61 SSKQQQKQSEESLRTVMYLSCWGPN 85

[Close]

BLAST of CmaCh19G009620 vs. NCBI nr
Match: gi|659110683|ref|XP_008455356.1| (PREDICTED: uncharacterized protein LOC103495543 [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-28
Identity = 66/85 (77.65%), Postives = 75/85 (88.24%), Query Frame = 1


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAV 60
          MSSSRRAW+VAASVGVVEALKDQG+CRWNHTI+S  QYA+NHVRSV QA +L+ +S A V
Sbjct: 1  MSSSRRAWIVAASVGVVEALKDQGICRWNHTIRSAHQYARNHVRSVPQATRLTGSSAAVV 60

Query: 61 SDQ-KWKQSEESLRTVMYLSCWGPN 85
          S + + KQSEESLRTVMYLSCWGPN
Sbjct: 61 SSKPQQKQSEESLRTVMYLSCWGPN 85

[Close]

BLAST of CmaCh19G009620 vs. NCBI nr
Match: gi|823159834|ref|XP_012479753.1| (PREDICTED: uncharacterized protein LOC105794912 [Gossypium raimondii])

HSP 1 Score: 132.9 bits (333), Expect = 2.7e-28
Identity = 66/86 (76.74%), Postives = 76/86 (88.37%), Query Frame = 1


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAV 60
          MSS+ RAWVVAAS+G VEALKDQG+CRWN+T++SV Q+AKNHVRS SQAK LSS S+AA+
Sbjct: 1  MSSTSRAWVVAASIGAVEALKDQGICRWNYTVRSVVQHAKNHVRSASQAKNLSSQSSAAI 60

Query: 61 SD--QKWKQSEESLRTVMYLSCWGPN 85
          S    K+KQSEESLRTVMYLSCWGPN
Sbjct: 61 SKGLNKYKQSEESLRTVMYLSCWGPN 86

The following BLAST results are available for this feature:

BLAST of CmaCh19G009620 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh19G009620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3P5_CUCSA	2.3e-34	85.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046670 PE=4 SV=1	[more]
A0A0D2PKH2_GOSRA	1.9e-28	76.74	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G206000 PE=4 SV=1	[more]
A0A0D2N5Q5_GOSRA	4.1e-28	76.74	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G205900 PE=4 SV=1	[more]
A0A0D2RIR4_GOSRA	3.0e-26	70.93	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G205800 PE=4 SV=1	[more]
A0A0B0NEB0_GOSAR	3.9e-26	73.26	Uncharacterized protein OS=Gossypium arboreum GN=F383_15200 PE=4 SV=1	[more]

BLAST of CmaCh19G009620 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10265.1	8.5e-25	67.06	Wound-responsive family protein	[more]
AT4G10270.1	7.2e-24	60.00	Wound-responsive family protein	[more]
AT4G33560.1	1.4e-06	31.82	Wound-responsive family protein	[more]

BLAST of CmaCh19G009620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110681\|ref\|XP_008455355.1\|	1.5e-34	85.88	PREDICTED: uncharacterized protein LOC103495542 [Cucumis melo]	[more]
gi\|449438062\|ref\|XP_004136809.1\|	3.3e-34	85.88	PREDICTED: uncharacterized protein LOC101202743 [Cucumis sativus]	[more]
gi\|778723985\|ref\|XP_011658732.1\|	3.2e-29	80.00	PREDICTED: uncharacterized protein LOC101213259 [Cucumis sativus]	[more]
gi\|659110683\|ref\|XP_008455356.1\|	2.0e-28	77.65	PREDICTED: uncharacterized protein LOC103495543 [Cucumis melo]	[more]
gi\|823159834\|ref\|XP_012479753.1\|	2.7e-28	76.74	PREDICTED: uncharacterized protein LOC105794912 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022251	DUF3774_wound-induced

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G009620.1	CmaCh19G009620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 10..83 score: 2.1
None	No IPR available	PANTHER	PTHR33090	FAMILY NOT NAMED	coord: 1..84 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh19G009620	CmaCh11G018560	Cucurbita maxima (Rimu)	cmacmaB148

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G009620	Cucumber (Gy14) v2	cgybcmaB944
CmaCh19G009620	Melon (DHL92) v3.6.1	cmamedB527
CmaCh19G009620	Melon (DHL92) v3.6.1	cmamedB534
CmaCh19G009620	Melon (DHL92) v3.6.1	cmamedB564
CmaCh19G009620	Silver-seed gourd	carcmaB0038
CmaCh19G009620	Silver-seed gourd	carcmaB0910
CmaCh19G009620	Silver-seed gourd	carcmaB1008
CmaCh19G009620	Silver-seed gourd	carcmaB1214
CmaCh19G009620	Cucumber (Chinese Long) v3	cmacucB0602
CmaCh19G009620	Cucumber (Chinese Long) v3	cmacucB0629
CmaCh19G009620	Cucumber (Chinese Long) v3	cmacucB0638
CmaCh19G009620	Watermelon (97103) v2	cmawmbB520
CmaCh19G009620	Watermelon (97103) v2	cmawmbB531
CmaCh19G009620	Watermelon (97103) v2	cmawmbB533
CmaCh19G009620	Wax gourd	cmawgoB0643
CmaCh19G009620	Wax gourd	cmawgoB0666
CmaCh19G009620	Wax gourd	cmawgoB0669
CmaCh19G009620	Cucurbita maxima (Rimu)	cmacmaB225
CmaCh19G009620	Cucurbita maxima (Rimu)	cmacmaB394
CmaCh19G009620	Cucurbita maxima (Rimu)	cmacmaB451
CmaCh19G009620	Cucurbita maxima (Rimu)	cmacmaB456
CmaCh19G009620	Cucurbita maxima (Rimu)	cmacmaB464
CmaCh19G009620	Cucumber (Gy14) v1	cgycmaB0407
CmaCh19G009620	Cucurbita moschata (Rifu)	cmacmoB492
CmaCh19G009620	Cucurbita moschata (Rifu)	cmacmoB499
CmaCh19G009620	Cucurbita moschata (Rifu)	cmacmoB507
CmaCh19G009620	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G009620	Cucurbita moschata (Rifu)	cmacmoB517
CmaCh19G009620	Cucurbita moschata (Rifu)	cmacmoB524
CmaCh19G009620	Cucurbita moschata (Rifu)	cmacmoB529
CmaCh19G009620	Cucurbita moschata (Rifu)	cmacmoB535
CmaCh19G009620	Wild cucumber (PI 183967)	cmacpiB508
CmaCh19G009620	Wild cucumber (PI 183967)	cmacpiB533
CmaCh19G009620	Cucumber (Chinese Long) v2	cmacuB527
CmaCh19G009620	Melon (DHL92) v3.5.1	cmameB461
CmaCh19G009620	Watermelon (Charleston Gray)	cmawcgB460
CmaCh19G009620	Watermelon (97103) v1	cmawmB486
CmaCh19G009620	Watermelon (97103) v1	cmawmB499
CmaCh19G009620	Cucurbita pepo (Zucchini)	cmacpeB522
CmaCh19G009620	Cucurbita pepo (Zucchini)	cmacpeB525
CmaCh19G009620	Cucurbita pepo (Zucchini)	cmacpeB533
CmaCh19G009620	Cucurbita pepo (Zucchini)	cmacpeB537
CmaCh19G009620	Cucurbita pepo (Zucchini)	cmacpeB545
CmaCh19G009620	Bottle gourd (USVL1VR-Ls)	cmalsiB468
CmaCh19G009620	Bottle gourd (USVL1VR-Ls)	cmalsiB472
CmaCh19G009620	Bottle gourd (USVL1VR-Ls)	cmalsiB477
CmaCh19G009620	Bottle gourd (USVL1VR-Ls)	cmalsiB479