CmaCh19G007720 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G007720
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Protein Ycf2
Location	Cma_Chr19 : 7583306 .. 7585465 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGGCCATCAATTCAAATCTTGGATTTTCGAATTGAGAGAGATCAAGGATTCTCACTATTTCTTAGATTCATGGACCCAATTCAATTCAGTGGGATCTTTCATTCACATTTTTTTCCATCAAGAACGTTTTATAAAACTCTTAGACTCCCGAATTTGGAGTATCCTACTTTCACGCAATTCACAGGGTTCAACAAGCAATCGATATTTCACGATCAAGGGTGTAGTACTATTTGTAGTAGCGGCACATTTTTTTCCATCTAGAACGTTTTATAAAACTCTTAGACTCCCGAATTTGGAGTATCCTACTTTCACGCAATTCATAGGGTTCAACAAGCAATCGATATTTCACGATCAAGGGTGTAGTACTATTTGTAGTAGCGGTCCTTATATATCGTATTAACAATCGAAAGATGGTCGAAAGAAAAAATCTCTATTTGATAGGGTTTCTTCCTATACCTATGAATTTCATTGGACCCAGAAATGATACATTGGAAGAATCTTTTGGCTCTTCCAATATCAATAGGTTGATTGTTTCGCTCCTGTATCTTCCAAAAGGAAAAAAGATCTCTGAGAGCTGTTTCCTGGATCCGAAAGAGAGTACTTGGGTTCTCCCAATAACTAAAAAGTGTATCATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTATAAAACTCTTAGACTCCCGAATTTGGAGTATCCTACTTTCACGCAATTCATAGGGTTCAACAAGCAATCGATATTTCACGATCAAGGGTGTAG

mRNA sequence

ATGAACGGCCATCAATTCAAATCTTGGATTTTCGAATTGAGAGAGATCAAGGATTCTCACTATTTCTTAGATTCATGGACCCAATTCAATTCAGTGGGATCTTTCATTCACATTTTTTTCCATCAAGAACGTTTTATAAAACTCTTAGACTCCCGAATTTGGAGTATCCTACTTTCACGCAATTCACAGGGTTCAACAAGCAATCGATATTTCACGATCAAGGGTGTAGTACTATTTGTAGTAGCGGCACATTTTTTTCCATCTAGAACGTTTTATAAAACTCTTAGACTCCCGAATTTGGAGTATCCTACTTTCACGCAATTCATAGGGTTCAACAAGCAATCGATATTTCACGATCAAGGGTGTATAGCGGTCCTTATATATCGTATTAACAATCGAAAGATGGTCGAAAGAAAAAATCTCTATTTGATAGGGTTTCTTCCTATACCTATGAATTTCATTGGACCCAGAAATGATACATTGGAAGAATCTTTTGGCTCTTCCAATATCAATAGGTTGATTGTTTCGCTCCTGTATCTTCCAAAAGGAAAAAAGATCTCTGAGAGCTGTTTCCTGGATCCGAAAGAGAGTACTTGGGTTCTCCCAATAACTAAAAAGGTTCAACAAGCAATCGATATTTCACGATCAAGGGTGTAG

Coding sequence (CDS)

ATGAACGGCCATCAATTCAAATCTTGGATTTTCGAATTGAGAGAGATCAAGGATTCTCACTATTTCTTAGATTCATGGACCCAATTCAATTCAGTGGGATCTTTCATTCACATTTTTTTCCATCAAGAACGTTTTATAAAACTCTTAGACTCCCGAATTTGGAGTATCCTACTTTCACGCAATTCACAGGGTTCAACAAGCAATCGATATTTCACGATCAAGGGTGTAGTACTATTTGTAGTAGCGGCACATTTTTTTCCATCTAGAACGTTTTATAAAACTCTTAGACTCCCGAATTTGGAGTATCCTACTTTCACGCAATTCATAGGGTTCAACAAGCAATCGATATTTCACGATCAAGGGTGTATAGCGGTCCTTATATATCGTATTAACAATCGAAAGATGGTCGAAAGAAAAAATCTCTATTTGATAGGGTTTCTTCCTATACCTATGAATTTCATTGGACCCAGAAATGATACATTGGAAGAATCTTTTGGCTCTTCCAATATCAATAGGTTGATTGTTTCGCTCCTGTATCTTCCAAAAGGAAAAAAGATCTCTGAGAGCTGTTTCCTGGATCCGAAAGAGAGTACTTGGGTTCTCCCAATAACTAAAAAGGTTCAACAAGCAATCGATATTTCACGATCAAGGGTGTAG

Protein sequence

MNGHQFKSWIFELREIKDSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDSRIWSILLSRNSQGSTSNRYFTIKGVVLFVVAAHFFPSRTFYKTLRLPNLEYPTFTQFIGFNKQSIFHDQGCIAVLIYRINNRKMVERKNLYLIGFLPIPMNFIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKESTWVLPITKKVQQAIDISRSRV

Homology

[Close]

BLAST of CmaCh19G007720 vs. Swiss-Prot
Match: YCF2_JASNU (Protein Ycf2 OS=Jasminum nudiflorum GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-49
Identity = 123/209 (58.85%), Postives = 133/209 (63.64%), Query Frame = 1


Query: 13  LREIKDSHYFL------DSWTQFNSVGSFIHIFFHQERFIKLLDSRIWSILLSRNSQGST 72
           LREIK+SHYF       DSWTQFNSV SFI IFFHQERF+KL D RIWSILLSR +QGST
Sbjct: 27  LREIKNSHYFFFFDSFFDSWTQFNSVRSFIPIFFHQERFLKLADPRIWSILLSR-TQGST 86

Query: 73  SNRYFTI-KGVVLFVVAAHFFPSRTFYKTLRLPNLEYPTFTQFIGFNKQSIFHDQGCIAV 132
                   KGV+              +K + L          F+             +A 
Sbjct: 87  QGSTSITIKGVI-------------LFKGVIL----------FV-------------VAA 146

Query: 133 LIYRINNRKMVERKNLYLIGFLPIPMNFIGPRNDTLEESFGSSNINRLIVSLLYLPKGKK 192
           LIYRINNR MVE K LYL G LPIPMN IGPRNDTLEES GSSNINRLIVSLLYLPKGK+
Sbjct: 147 LIYRINNRNMVESKTLYLRGLLPIPMNSIGPRNDTLEESVGSSNINRLIVSLLYLPKGKR 198

Query: 193 IS--------ESCFLDPKESTWVLPITKK 207
           IS        ES FL+PKESTWVLPITKK
Sbjct: 207 ISESSFLNPKESTFLNPKESTWVLPITKK 198

[Close]

BLAST of CmaCh19G007720 vs. Swiss-Prot
Match: YCF2_PANGI (Protein Ycf2 OS=Panax ginseng GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 5.0e-47
Identity = 115/210 (54.76%), Postives = 128/210 (60.95%), Query Frame = 1


Query: 1   MNGHQFKSWIFELREI----KDSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDSRIWSI 60
           M GHQFKSWIFELREI    K+SHYFLDS TQFNS                         
Sbjct: 1   MKGHQFKSWIFELREILREIKNSHYFLDSRTQFNS------------------------- 60

Query: 61  LLSRNSQGSTSNRYFTIKGVVLFVVAAHFFPSRTFYKTLRLPNLEYPTFTQFIGFNKQSI 120
                  GS S+ +F  +  +        F  R  +  L   N +  T  ++       +
Sbjct: 61  ------VGSFSHIFFHQERFI------KLFDPR-IWSILLSRNSQGSTSNRYFTIKGVIL 120

Query: 121 FHDQGCIAVLIYRINNRKMVERKNLYLIGFLPIPMNFIGPRNDTLEESFGSSNINRLIVS 180
           F     +AVLIYRIN+R MVERKNLYLIG LPIPMN IGPRNDTLEES GSSNINRLIVS
Sbjct: 121 F----VVAVLIYRINSRNMVERKNLYLIGLLPIPMNSIGPRNDTLEESVGSSNINRLIVS 168

Query: 181 LLYLPKGKKISESCFLDPKESTWVLPITKK 207
           LLYLPKGKKISESCFL+PKESTWVLPITKK
Sbjct: 181 LLYLPKGKKISESCFLNPKESTWVLPITKK 168

[Close]

BLAST of CmaCh19G007720 vs. Swiss-Prot
Match: YCF2_LACSA (Protein Ycf2 OS=Lactuca sativa GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 5.6e-46
Identity = 113/210 (53.81%), Postives = 126/210 (60.00%), Query Frame = 1


Query: 1   MNGHQFKSWIFELREI----KDSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDSRIWSI 60
           M GH+FKSWI ELREI    K+SHYFLDSWTQFNS                         
Sbjct: 1   MTGHEFKSWILELREILREIKNSHYFLDSWTQFNS------------------------- 60

Query: 61  LLSRNSQGSTSNRYFTIKGVVLFVVAAHFFPSRTFYKTLRLPNLEYPTFTQFIGFNKQSI 120
                  GS  + +F  +  +        F SR  +  L   N +  T  ++       +
Sbjct: 61  ------VGSFIHIFFHQERFI------KLFDSR-IWSILLSHNSQGSTSNRYFTIKGVIL 120

Query: 121 FHDQGCIAVLIYRINNRKMVERKNLYLIGFLPIPMNFIGPRNDTLEESFGSSNINRLIVS 180
           F     +AVLIYRINNR MVERKNLYLIG LPIPMN IGPRNDTLEES GSSNINRLIVS
Sbjct: 121 FG----VAVLIYRINNRNMVERKNLYLIGLLPIPMNSIGPRNDTLEESVGSSNINRLIVS 168

Query: 181 LLYLPKGKKISESCFLDPKESTWVLPITKK 207
           LLYLPKGKKI ES FL+PKESTWVLPITKK
Sbjct: 181 LLYLPKGKKIYESSFLNPKESTWVLPITKK 168

[Close]

BLAST of CmaCh19G007720 vs. Swiss-Prot
Match: YCF2_HELAN (Protein Ycf2 OS=Helianthus annuus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 5.6e-46
Identity = 113/210 (53.81%), Postives = 126/210 (60.00%), Query Frame = 1


Query: 1   MNGHQFKSWIFELREI----KDSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDSRIWSI 60
           M GH+FKSWI ELREI    K+SHYFLDSWTQFNS                         
Sbjct: 1   MTGHEFKSWILELREILREIKNSHYFLDSWTQFNS------------------------- 60

Query: 61  LLSRNSQGSTSNRYFTIKGVVLFVVAAHFFPSRTFYKTLRLPNLEYPTFTQFIGFNKQSI 120
                  GS  + +F  +  +        F SR  +  L   N +  T  ++       +
Sbjct: 61  ------VGSFIHIFFHQERFI------KLFDSR-IWSILLSHNSQGSTSNRYFTIKGVIL 120

Query: 121 FHDQGCIAVLIYRINNRKMVERKNLYLIGFLPIPMNFIGPRNDTLEESFGSSNINRLIVS 180
           F     +AVLIYRINNR MVERKNLYLIG LPIPMN IGPRNDTLEES GSSNINRLIVS
Sbjct: 121 FG----VAVLIYRINNRNMVERKNLYLIGLLPIPMNSIGPRNDTLEESVGSSNINRLIVS 168

Query: 181 LLYLPKGKKISESCFLDPKESTWVLPITKK 207
           LLYLPKGKKI ES FL+PKESTWVLPITKK
Sbjct: 181 LLYLPKGKKIYESSFLNPKESTWVLPITKK 168

[Close]

BLAST of CmaCh19G007720 vs. Swiss-Prot
Match: YCF2_GUIAB (Protein Ycf2 OS=Guizotia abyssinica GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 5.6e-46
Identity = 113/210 (53.81%), Postives = 126/210 (60.00%), Query Frame = 1


Query: 1   MNGHQFKSWIFELREI----KDSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDSRIWSI 60
           M GH+FKSWI ELREI    K+SHYFLDSWTQFNS                         
Sbjct: 1   MTGHEFKSWILELREILREIKNSHYFLDSWTQFNS------------------------- 60

Query: 61  LLSRNSQGSTSNRYFTIKGVVLFVVAAHFFPSRTFYKTLRLPNLEYPTFTQFIGFNKQSI 120
                  GS  + +F  +  +        F SR  +  L   N +  T  ++       +
Sbjct: 61  ------VGSFIHIFFHQERFI------KLFDSR-IWSILLSHNSQGSTSNRYFTIKGVIL 120

Query: 121 FHDQGCIAVLIYRINNRKMVERKNLYLIGFLPIPMNFIGPRNDTLEESFGSSNINRLIVS 180
           F     +AVLIYRINNR MVERKNLYLIG LPIPMN IGPRNDTLEES GSSNINRLIVS
Sbjct: 121 FG----VAVLIYRINNRNMVERKNLYLIGLLPIPMNSIGPRNDTLEESVGSSNINRLIVS 168

Query: 181 LLYLPKGKKISESCFLDPKESTWVLPITKK 207
           LLYLPKGKKI ES FL+PKESTWVLPITKK
Sbjct: 181 LLYLPKGKKIYESSFLNPKESTWVLPITKK 168

[Close]

BLAST of CmaCh19G007720 vs. TrEMBL
Match: K4KER2_9ROSI (Ycf2 (Fragment) OS=Scyphostegia borneensis GN=ycf2 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 5.2e-75
Identity = 153/215 (71.16%), Postives = 160/215 (74.42%), Query Frame = 1


Query: 1   MNGHQFKSWIFELREI----KDSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDSRIWSI 60
           M GHQFKSWIFELREI    K+SHYFLDSWTQF+SVG FIHIFFHQERF+KLLDSRIWSI
Sbjct: 1   MKGHQFKSWIFELREILREIKNSHYFLDSWTQFDSVGPFIHIFFHQERFLKLLDSRIWSI 60

Query: 61  LLSRNSQGSTSNRYFTIKGVVLFVVAAHFFPSRTFYKTLRLPNLEYPTFTQFIGFNKQSI 120
           LLSRNSQGSTSNRYFTIKGVVLFVV         F                         
Sbjct: 61  LLSRNSQGSTSNRYFTIKGVVLFVVKGVVXXXXLF------------------------- 120

Query: 121 FHDQGCIAVLIYRINNRKMVERKNLYLIGFLPIPMNFIGPRNDTLEESFGSSNINRLIVS 180
                 + VLIYRINNRKMVERKNLYL G LPIPMN IGPRN+TLEESFGSSNINRLIVS
Sbjct: 121 -----VVVVLIYRINNRKMVERKNLYLTGLLPIPMNSIGPRNETLEESFGSSNINRLIVS 180

Query: 181 LLYLPKGKKISESCFLDPKESTWVLPITKKVQQAI 212
           LLYLPKGKKISESCFLDPK STWVLPIT   ++ I
Sbjct: 181 LLYLPKGKKISESCFLDPKGSTWVLPITXXXKKCI 185

[Close]

BLAST of CmaCh19G007720 vs. TrEMBL
Match: A0A0C5CHC0_ACTCH (Protein Ycf2 OS=Actinidia chinensis GN=ycf2 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61
Identity = 135/213 (63.38%), Postives = 154/213 (72.30%), Query Frame = 1


Query: 1   MNGHQFKSWIFELREI----KDSHYFLDSWTQF--NSVGSFIHIFFHQERFIKLLDSRIW 60
           M GH+F+ WI ELREI    K+ H+ LDSW QF  + VG F+H+FFHQERFIKL D RIW
Sbjct: 1   MKGHRFRFWILELREILREIKNFHFLLDSWIQFQLDLVGPFVHVFFHQERFIKLFDPRIW 60

Query: 61  SILLSRNSQGSTSNRYF-TIKGVVLFVVAAHFFPSRTFYKTLRLPNLEYPTFTQFIGFNK 120
           SILLSR S+GST++  F TI+G +LFVV         F   ++            I F  
Sbjct: 61  SILLSRTSRGSTTSSGFATIEGFILFVVKGVIKGVMRFVFVVK----------GVILFVV 120

Query: 121 QSIFHDQGCIAVLIYRINNRKMVERKNLYLIGFLPIPMNFIGPRNDTLEESFGSSNINRL 180
           + +      +AVLIY INNR MVERKNLYLIG LPIPMN IGPRNDTLE+SFGSSNINRL
Sbjct: 121 KGVI--LFVVAVLIYGINNRNMVERKNLYLIGLLPIPMNSIGPRNDTLEDSFGSSNINRL 180

Query: 181 IVSLLYLPKGKKISESCFLDPKESTWVLPITKK 207
           IVSLLYLPKGKKISESCFL+PKESTWVLPITKK
Sbjct: 181 IVSLLYLPKGKKISESCFLNPKESTWVLPITKK 201

[Close]

BLAST of CmaCh19G007720 vs. TrEMBL
Match: A0A0C5CHS7_ACTCH (Protein Ycf2 OS=Actinidia chinensis GN=ycf2 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61
Identity = 135/213 (63.38%), Postives = 154/213 (72.30%), Query Frame = 1


Query: 1   MNGHQFKSWIFELREI----KDSHYFLDSWTQF--NSVGSFIHIFFHQERFIKLLDSRIW 60
           M GH+F+ WI ELREI    K+ H+ LDSW QF  + VG F+H+FFHQERFIKL D RIW
Sbjct: 1   MKGHRFRFWILELREILREIKNFHFLLDSWIQFQLDLVGPFVHVFFHQERFIKLFDPRIW 60

Query: 61  SILLSRNSQGSTSNRYF-TIKGVVLFVVAAHFFPSRTFYKTLRLPNLEYPTFTQFIGFNK 120
           SILLSR S+GST++  F TI+G +LFVV         F   ++            I F  
Sbjct: 61  SILLSRTSRGSTTSSGFATIEGFILFVVKGVIKGVMRFVFVVK----------GVILFVV 120

Query: 121 QSIFHDQGCIAVLIYRINNRKMVERKNLYLIGFLPIPMNFIGPRNDTLEESFGSSNINRL 180
           + +      +AVLIY INNR MVERKNLYLIG LPIPMN IGPRNDTLE+SFGSSNINRL
Sbjct: 121 KGVI--LFVVAVLIYGINNRNMVERKNLYLIGLLPIPMNSIGPRNDTLEDSFGSSNINRL 180

Query: 181 IVSLLYLPKGKKISESCFLDPKESTWVLPITKK 207
           IVSLLYLPKGKKISESCFL+PKESTWVLPITKK
Sbjct: 181 IVSLLYLPKGKKISESCFLNPKESTWVLPITKK 201

[Close]

BLAST of CmaCh19G007720 vs. TrEMBL
Match: A0A0C5CKA6_ACTCH (Protein Ycf2 OS=Actinidia chinensis GN=ycf2 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61
Identity = 135/213 (63.38%), Postives = 154/213 (72.30%), Query Frame = 1


Query: 1   MNGHQFKSWIFELREI----KDSHYFLDSWTQF--NSVGSFIHIFFHQERFIKLLDSRIW 60
           M GH+F+ WI ELREI    K+ H+ LDSW QF  + VG F+H+FFHQERFIKL D RIW
Sbjct: 1   MKGHRFRFWILELREILREIKNFHFLLDSWIQFQLDLVGPFVHVFFHQERFIKLFDPRIW 60

Query: 61  SILLSRNSQGSTSNRYF-TIKGVVLFVVAAHFFPSRTFYKTLRLPNLEYPTFTQFIGFNK 120
           SILLSR S+GST++  F TI+G +LFVV         F   ++            I F  
Sbjct: 61  SILLSRTSRGSTTSSGFATIEGFILFVVKGVIKGVMRFVFVVK----------GVILFVV 120

Query: 121 QSIFHDQGCIAVLIYRINNRKMVERKNLYLIGFLPIPMNFIGPRNDTLEESFGSSNINRL 180
           + +      +AVLIY INNR MVERKNLYLIG LPIPMN IGPRNDTLE+SFGSSNINRL
Sbjct: 121 KGVI--LFVVAVLIYGINNRNMVERKNLYLIGLLPIPMNSIGPRNDTLEDSFGSSNINRL 180

Query: 181 IVSLLYLPKGKKISESCFLDPKESTWVLPITKK 207
           IVSLLYLPKGKKISESCFL+PKESTWVLPITKK
Sbjct: 181 IVSLLYLPKGKKISESCFLNPKESTWVLPITKK 201

[Close]

BLAST of CmaCh19G007720 vs. TrEMBL
Match: A0A0C5CYP0_ACTDE (Protein Ycf2 OS=Actinidia deliciosa GN=ycf2 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61
Identity = 135/213 (63.38%), Postives = 154/213 (72.30%), Query Frame = 1


Query: 1   MNGHQFKSWIFELREI----KDSHYFLDSWTQF--NSVGSFIHIFFHQERFIKLLDSRIW 60
           M GH+F+ WI ELREI    K+ H+ LDSW QF  + VG F+H+FFHQERFIKL D RIW
Sbjct: 1   MKGHRFRFWILELREILREIKNFHFLLDSWIQFQLDLVGPFVHVFFHQERFIKLFDPRIW 60

Query: 61  SILLSRNSQGSTSNRYF-TIKGVVLFVVAAHFFPSRTFYKTLRLPNLEYPTFTQFIGFNK 120
           SILLSR S+GST++  F TI+G +LFVV         F   ++            I F  
Sbjct: 61  SILLSRTSRGSTTSSGFATIEGFILFVVKGVIKGVMRFVFVVK----------GVILFVV 120

Query: 121 QSIFHDQGCIAVLIYRINNRKMVERKNLYLIGFLPIPMNFIGPRNDTLEESFGSSNINRL 180
           + +      +AVLIY INNR MVERKNLYLIG LPIPMN IGPRNDTLE+SFGSSNINRL
Sbjct: 121 KGVI--LFVVAVLIYGINNRNMVERKNLYLIGLLPIPMNSIGPRNDTLEDSFGSSNINRL 180

Query: 181 IVSLLYLPKGKKISESCFLDPKESTWVLPITKK 207
           IVSLLYLPKGKKISESCFL+PKESTWVLPITKK
Sbjct: 181 IVSLLYLPKGKKISESCFLNPKESTWVLPITKK 201

[Close]

BLAST of CmaCh19G007720 vs. TAIR10
Match: ATCG00860.1 (ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-36
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 1


Query: 1  MNGHQFKSWIFELREI----KDSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDSRIWSI 60
          M GHQFKSWIFELREI    K++HYFLDSWTQFNSVGSFIHIFFHQERF KLLD RI+SI
Sbjct: 1  MKGHQFKSWIFELREIVREIKNAHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRIFSI 60

Query: 61 LLSRNSQGSTSNRYFTIKGVVLFVVAA 84
          LL RNSQGSTSNRYFTIKGVVLFVVAA
Sbjct: 61 LLLRNSQGSTSNRYFTIKGVVLFVVAA 87

[Close]

BLAST of CmaCh19G007720 vs. TAIR10
Match: ATCG01280.1 (ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-36
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 1


Query: 1  MNGHQFKSWIFELREI----KDSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDSRIWSI 60
          M GHQFKSWIFELREI    K++HYFLDSWTQFNSVGSFIHIFFHQERF KLLD RI+SI
Sbjct: 1  MKGHQFKSWIFELREIVREIKNAHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRIFSI 60

Query: 61 LLSRNSQGSTSNRYFTIKGVVLFVVAA 84
          LL RNSQGSTSNRYFTIKGVVLFVVAA
Sbjct: 61 LLLRNSQGSTSNRYFTIKGVVLFVVAA 87

[Close]

BLAST of CmaCh19G007720 vs. NCBI nr
Match: gi|408903774|gb|AFU96478.1| (Ycf2, partial (chloroplast) [Scyphostegia borneensis])

HSP 1 Score: 288.9 bits (738), Expect = 7.5e-75
Identity = 153/215 (71.16%), Postives = 160/215 (74.42%), Query Frame = 1


Query: 1   MNGHQFKSWIFELREI----KDSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDSRIWSI 60
           M GHQFKSWIFELREI    K+SHYFLDSWTQF+SVG FIHIFFHQERF+KLLDSRIWSI
Sbjct: 1   MKGHQFKSWIFELREILREIKNSHYFLDSWTQFDSVGPFIHIFFHQERFLKLLDSRIWSI 60

Query: 61  LLSRNSQGSTSNRYFTIKGVVLFVVAAHFFPSRTFYKTLRLPNLEYPTFTQFIGFNKQSI 120
           LLSRNSQGSTSNRYFTIKGVVLFVV         F                         
Sbjct: 61  LLSRNSQGSTSNRYFTIKGVVLFVVKGVVXXXXLF------------------------- 120

Query: 121 FHDQGCIAVLIYRINNRKMVERKNLYLIGFLPIPMNFIGPRNDTLEESFGSSNINRLIVS 180
                 + VLIYRINNRKMVERKNLYL G LPIPMN IGPRN+TLEESFGSSNINRLIVS
Sbjct: 121 -----VVVVLIYRINNRKMVERKNLYLTGLLPIPMNSIGPRNETLEESFGSSNINRLIVS 180

Query: 181 LLYLPKGKKISESCFLDPKESTWVLPITKKVQQAI 212
           LLYLPKGKKISESCFLDPK STWVLPIT   ++ I
Sbjct: 181 LLYLPKGKKISESCFLDPKGSTWVLPITXXXKKCI 185

[Close]

BLAST of CmaCh19G007720 vs. NCBI nr
Match: gi|788229824|ref|YP_009128031.1| (conserved hypothetical protein ycf2 (chloroplast) [Actinidia chinensis])

HSP 1 Score: 243.8 bits (621), Expect = 2.8e-61
Identity = 135/213 (63.38%), Postives = 154/213 (72.30%), Query Frame = 1


Query: 1   MNGHQFKSWIFELREI----KDSHYFLDSWTQF--NSVGSFIHIFFHQERFIKLLDSRIW 60
           M GH+F+ WI ELREI    K+ H+ LDSW QF  + VG F+H+FFHQERFIKL D RIW
Sbjct: 1   MKGHRFRFWILELREILREIKNFHFLLDSWIQFQLDLVGPFVHVFFHQERFIKLFDPRIW 60

Query: 61  SILLSRNSQGSTSNRYF-TIKGVVLFVVAAHFFPSRTFYKTLRLPNLEYPTFTQFIGFNK 120
           SILLSR S+GST++  F TI+G +LFVV         F   ++            I F  
Sbjct: 61  SILLSRTSRGSTTSSGFATIEGFILFVVKGVIKGVMRFVFVVK----------GVILFVV 120

Query: 121 QSIFHDQGCIAVLIYRINNRKMVERKNLYLIGFLPIPMNFIGPRNDTLEESFGSSNINRL 180
           + +      +AVLIY INNR MVERKNLYLIG LPIPMN IGPRNDTLE+SFGSSNINRL
Sbjct: 121 KGVI--LFVVAVLIYGINNRNMVERKNLYLIGLLPIPMNSIGPRNDTLEDSFGSSNINRL 180

Query: 181 IVSLLYLPKGKKISESCFLDPKESTWVLPITKK 207
           IVSLLYLPKGKKISESCFL+PKESTWVLPITKK
Sbjct: 181 IVSLLYLPKGKKISESCFLNPKESTWVLPITKK 201

[Close]

BLAST of CmaCh19G007720 vs. NCBI nr
Match: gi|772650116|ref|YP_009128114.1| (conserved hypothetical protein ycf2 (chloroplast) [Actinidia deliciosa])

HSP 1 Score: 243.8 bits (621), Expect = 2.8e-61
Identity = 135/213 (63.38%), Postives = 154/213 (72.30%), Query Frame = 1


Query: 1   MNGHQFKSWIFELREI----KDSHYFLDSWTQF--NSVGSFIHIFFHQERFIKLLDSRIW 60
           M GH+F+ WI ELREI    K+ H+ LDSW QF  + VG F+H+FFHQERFIKL D RIW
Sbjct: 1   MKGHRFRFWILELREILREIKNFHFLLDSWIQFQLDLVGPFVHVFFHQERFIKLFDPRIW 60

Query: 61  SILLSRNSQGSTSNRYF-TIKGVVLFVVAAHFFPSRTFYKTLRLPNLEYPTFTQFIGFNK 120
           SILLSR S+GST++  F TI+G +LFVV         F   ++            I F  
Sbjct: 61  SILLSRTSRGSTTSSGFATIEGFILFVVKGVIKGVMRFVFVVK----------GVILFVV 120

Query: 121 QSIFHDQGCIAVLIYRINNRKMVERKNLYLIGFLPIPMNFIGPRNDTLEESFGSSNINRL 180
           + +      +AVLIY INNR MVERKNLYLIG LPIPMN IGPRNDTLE+SFGSSNINRL
Sbjct: 121 KGVI--LFVVAVLIYGINNRNMVERKNLYLIGLLPIPMNSIGPRNDTLEDSFGSSNINRL 180

Query: 181 IVSLLYLPKGKKISESCFLDPKESTWVLPITKK 207
           IVSLLYLPKGKKISESCFL+PKESTWVLPITKK
Sbjct: 181 IVSLLYLPKGKKISESCFLNPKESTWVLPITKK 201

[Close]

BLAST of CmaCh19G007720 vs. NCBI nr
Match: gi|757815231|gb|AJO26212.1| (conserved hypothetical protein ycf2 (chloroplast) [Actinidia chinensis])

HSP 1 Score: 243.8 bits (621), Expect = 2.8e-61
Identity = 135/213 (63.38%), Postives = 154/213 (72.30%), Query Frame = 1


Query: 1   MNGHQFKSWIFELREI----KDSHYFLDSWTQF--NSVGSFIHIFFHQERFIKLLDSRIW 60
           M GH+F+ WI ELREI    K+ H+ LDSW QF  + VG F+H+FFHQERFIKL D RIW
Sbjct: 1   MKGHRFRFWILELREILREIKNFHFLLDSWIQFQLDLVGPFVHVFFHQERFIKLFDPRIW 60

Query: 61  SILLSRNSQGSTSNRYF-TIKGVVLFVVAAHFFPSRTFYKTLRLPNLEYPTFTQFIGFNK 120
           SILLSR S+GST++  F TI+G +LFVV         F   ++            I F  
Sbjct: 61  SILLSRTSRGSTTSSGFATIEGFILFVVKGVIKGVMRFVFVVK----------GVILFVV 120

Query: 121 QSIFHDQGCIAVLIYRINNRKMVERKNLYLIGFLPIPMNFIGPRNDTLEESFGSSNINRL 180
           + +      +AVLIY INNR MVERKNLYLIG LPIPMN IGPRNDTLE+SFGSSNINRL
Sbjct: 121 KGVI--LFVVAVLIYGINNRNMVERKNLYLIGLLPIPMNSIGPRNDTLEDSFGSSNINRL 180

Query: 181 IVSLLYLPKGKKISESCFLDPKESTWVLPITKK 207
           IVSLLYLPKGKKISESCFL+PKESTWVLPITKK
Sbjct: 181 IVSLLYLPKGKKISESCFLNPKESTWVLPITKK 201

[Close]

BLAST of CmaCh19G007720 vs. NCBI nr
Match: gi|374249579|ref|YP_005088849.1| (Ycf2 (chloroplast) [Millettia pinnata])

HSP 1 Score: 241.5 bits (615), Expect = 1.4e-60
Identity = 135/210 (64.29%), Postives = 142/210 (67.62%), Query Frame = 1


Query: 1   MNGHQFKSWIFELREI----KDSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDSRIWSI 60
           M GHQFKSWIFELREI    K+S YFLDSWTQFNS G FIHIFFHQE FIKLLDS+IWSI
Sbjct: 1   MKGHQFKSWIFELREILREIKNSRYFLDSWTQFNSAGFFIHIFFHQESFIKLLDSQIWSI 60

Query: 61  LLSRNSQGSTSNRYFTIKGVVLFVVAAHFFPSRTFYKTLRLPNLEYPTFTQFIGFNKQSI 120
           LLSRNSQG                                 P+  Y T    + F     
Sbjct: 61  LLSRNSQG--------------------------------SPSNRYFTIKDVVLF----- 120

Query: 121 FHDQGCIAVLIYRINNRKMVERKNLYLIGFLPIPMNFIGPRNDTLEESFGSSNINRLIVS 180
                 +A+LIYRINN+KMVERKNLYL GFLPIPMN IGPRNDTLEE F SSNINRLIV 
Sbjct: 121 -----VVAILIYRINNQKMVERKNLYLTGFLPIPMNSIGPRNDTLEEYFESSNINRLIVP 168

Query: 181 LLYLPKGKKISESCFLDPKESTWVLPITKK 207
           LLYLPKGKKISES FLDPKEST VLPITKK
Sbjct: 181 LLYLPKGKKISESSFLDPKESTRVLPITKK 168

The following BLAST results are available for this feature:

BLAST of CmaCh19G007720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YCF2_JASNU	1.4e-49	58.85	Protein Ycf2 OS=Jasminum nudiflorum GN=ycf2-A PE=3 SV=1	[more]
YCF2_PANGI	5.0e-47	54.76	Protein Ycf2 OS=Panax ginseng GN=ycf2-A PE=3 SV=1	[more]
YCF2_LACSA	5.6e-46	53.81	Protein Ycf2 OS=Lactuca sativa GN=ycf2-A PE=3 SV=1	[more]
YCF2_HELAN	5.6e-46	53.81	Protein Ycf2 OS=Helianthus annuus GN=ycf2-A PE=3 SV=1	[more]
YCF2_GUIAB	5.6e-46	53.81	Protein Ycf2 OS=Guizotia abyssinica GN=ycf2-A PE=3 SV=1	[more]

BLAST of CmaCh19G007720 vs. TrEMBL


Match Name	E-value	Identity	Description
K4KER2_9ROSI	5.2e-75	71.16	Ycf2 (Fragment) OS=Scyphostegia borneensis GN=ycf2 PE=3 SV=1	[more]
A0A0C5CHC0_ACTCH	1.9e-61	63.38	Protein Ycf2 OS=Actinidia chinensis GN=ycf2 PE=3 SV=1	[more]
A0A0C5CHS7_ACTCH	1.9e-61	63.38	Protein Ycf2 OS=Actinidia chinensis GN=ycf2 PE=3 SV=1	[more]
A0A0C5CKA6_ACTCH	1.9e-61	63.38	Protein Ycf2 OS=Actinidia chinensis GN=ycf2 PE=3 SV=1	[more]
A0A0C5CYP0_ACTDE	1.9e-61	63.38	Protein Ycf2 OS=Actinidia deliciosa GN=ycf2 PE=3 SV=1	[more]

BLAST of CmaCh19G007720 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00860.1	1.1e-36	87.36	ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.1e-36	87.36	ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core	[more]

BLAST of CmaCh19G007720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|408903774\|gb\|AFU96478.1\|	7.5e-75	71.16	Ycf2, partial (chloroplast) [Scyphostegia borneensis]	[more]
gi\|788229824\|ref\|YP_009128031.1\|	2.8e-61	63.38	conserved hypothetical protein ycf2 (chloroplast) [Actinidia chinensis]	[more]
gi\|772650116\|ref\|YP_009128114.1\|	2.8e-61	63.38	conserved hypothetical protein ycf2 (chloroplast) [Actinidia deliciosa]	[more]
gi\|757815231\|gb\|AJO26212.1\|	2.8e-61	63.38	conserved hypothetical protein ycf2 (chloroplast) [Actinidia chinensis]	[more]
gi\|374249579\|ref\|YP_005088849.1\|	1.4e-60	64.29	Ycf2 (chloroplast) [Millettia pinnata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008543	Uncharacterised_Ycf2

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009507	chloroplast

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G007720.1	CmaCh19G007720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008543	Uncharacterised protein family Ycf2	PFAM	PF05695	DUF825	coord: 1..84 score: 2.5E-45coord: 123..207 score: 5.5
None	No IPR available	PANTHER	PTHR33078	FAMILY NOT NAMED	coord: 2..81 score: 1.4E-116coord: 124..206 score: 1.4E
None	No IPR available	PANTHER	PTHR33078:SF4	SUBFAMILY NOT NAMED	coord: 2..81 score: 1.4E-116coord: 124..206 score: 1.4E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G007720	Silver-seed gourd	carcmaB0484
CmaCh19G007720	Silver-seed gourd	carcmaB1452
CmaCh19G007720	Silver-seed gourd	carcmaB1470
CmaCh19G007720	Cucumber (Chinese Long) v3	cmacucB0638
CmaCh19G007720	Watermelon (97103) v2	cmawmbB531
CmaCh19G007720	Wax gourd	cmawgoB0652
CmaCh19G007720	Cucurbita maxima (Rimu)	cmacmaB151
CmaCh19G007720	Cucurbita maxima (Rimu)	cmacmaB445
CmaCh19G007720	Cucurbita maxima (Rimu)	cmacmaB448
CmaCh19G007720	Cucumber (Gy14) v1	cgycmaB0216
CmaCh19G007720	Cucurbita moschata (Rifu)	cmacmoB492
CmaCh19G007720	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G007720	Cucurbita moschata (Rifu)	cmacmoB522
CmaCh19G007720	Wild cucumber (PI 183967)	cmacpiB533
CmaCh19G007720	Cucumber (Chinese Long) v2	cmacuB527
CmaCh19G007720	Melon (DHL92) v3.5.1	cmameB462
CmaCh19G007720	Watermelon (Charleston Gray)	cmawcgB460
CmaCh19G007720	Watermelon (Charleston Gray)	cmawcgB461
CmaCh19G007720	Watermelon (97103) v1	cmawmB503
CmaCh19G007720	Cucurbita pepo (Zucchini)	cmacpeB522
CmaCh19G007720	Cucurbita pepo (Zucchini)	cmacpeB525
CmaCh19G007720	Cucurbita pepo (Zucchini)	cmacpeB537
CmaCh19G007720	Cucurbita pepo (Zucchini)	cmacpeB552
CmaCh19G007720	Bottle gourd (USVL1VR-Ls)	cmalsiB472
CmaCh19G007720	Cucumber (Gy14) v2	cgybcmaB944
CmaCh19G007720	Melon (DHL92) v3.6.1	cmamedB536