CmaCh19G007590 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G007590
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	GPI mannosyltransferase
Location	Cma_Chr19 : 7540200 .. 7541229 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCTTTAGCTTCCGCTCCCTGTTGACGCTCTCAGCGATCTTCAGGTCGGTACTTATCATCTACGGCGAGTGGCAGGATGCGCACATGGAGGTTAGATATACTGATGTCGATTACATCGTATTCTCAGACGCTGCTTCTCTCAGATCCACTTACAGCAATACATATACTATGAGGTCAGATGTTCGAATTCTTTTGTGAGATTCCACATTGGTTGGAGAAGGGAACGAAACATTACTTATAAGGGTGTGGAAACCTCTCACTAGCAGATGAGTTTTAAAATCGTGAGGCTGATGACTGTACTAATGGGCTAAAGCTGACAATATCTGCTAGTGGTGGGGTTGAACTGTTACAAATGGTATTAGAGTTAGGTTCCGAATGGTGTGTCAATAAGGACACTAGGTCCCCAAGGGGGTGGATGGTGAGATCCCACATTGGTTGGAGAGGGGAATGAAACATTCCTTATAAGGGTGTAGAAACCTCTATGTAGCAAACACATTTTAAAACCATGAGGCTGACGGTAATACTAACAGGCCAAAGCGGACAATATTTGCTAGCGGTGAGTTTGGGCTATTACAAATGATATTAGAGCTAGATTCTCAATGGTGTGCCAGCGAGGACTCTGGTCTCCTAAGGAGGTGGATTGTGAGATCCTACATTGGTTGGTTGGAGAGGGAACGAAACATTTCTTATAAATGTGTGGAAACCGACCAGACGTGTTTCAAAACTGTGAGGTTGACGACGATACTAATAGGCCAAACAGACAATATCTGCTAGCAGTGGGCTTGGACGGTTATATCTTTACTTGGATGCTGTGGAACTAATTGTTGATGGAAATATGCAGTAGCCTAGAAAGATGACTGTTTAGATCGTGGGATGTAGCTATTTACTGGGAGATTCGTGCGTTTGTTAGTAGATTACCCATCTGTAGTCTAGTATAACTCCCTTTCCCTGTAACAGGCCAGTTGTTACAAGCTGCATTTTGGTATGGACTTCTGATTCTCAATCCAAATCTATTCAAATCTGA

mRNA sequence

ATGGCGTCCTTTAGCTTCCGCTCCCTGTTGACGCTCTCAGCGATCTTCAGGTCGGTACTTATCATCTACGGCGAGTGGCAGGATGCGCACATGGAGGTTAGATATACTGATGTCGATTACATCGTATTCTCAGACGCTGCTTCTCTCAGATCCACTTACAGCAATACATATACTATGAGGCCAGTTGTTACAAGCTGCATTTTGGTATGGACTTCTGATTCTCAATCCAAATCTATTCAAATCTGA

Coding sequence (CDS)

ATGGCGTCCTTTAGCTTCCGCTCCCTGTTGACGCTCTCAGCGATCTTCAGGTCGGTACTTATCATCTACGGCGAGTGGCAGGATGCGCACATGGAGGTTAGATATACTGATGTCGATTACATCGTATTCTCAGACGCTGCTTCTCTCAGATCCACTTACAGCAATACATATACTATGAGGCCAGTTGTTACAAGCTGCATTTTGGTATGGACTTCTGATTCTCAATCCAAATCTATTCAAATCTGA

Protein sequence

MASFSFRSLLTLSAIFRSVLIIYGEWQDAHMEVRYTDVDYIVFSDAASLRSTYSNTYTMRPVVTSCILVWTSDSQSKSIQI

Homology

[Close]

BLAST of CmaCh19G007590 vs. Swiss-Prot
Match: PIGM_ARATH (GPI mannosyltransferase 1 OS=Arabidopsis thaliana GN=PIGM PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-13
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1


Query: 6  FRSLLTLSAIFRSVLIIYGEWQDAHMEVRYTDVDYIVFSDAASLRSTYSNTY 58
          FRSLL  S + R  LI+YGEWQDAHMEVRYTDVDYIVFSDAASL ++  + Y
Sbjct: 18 FRSLLVFSMLLRVFLIVYGEWQDAHMEVRYTDVDYIVFSDAASLMASGESPY 69

[Close]

BLAST of CmaCh19G007590 vs. Swiss-Prot
Match: GPI14_ASPOR (GPI mannosyltransferase 1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=gpi14 PE=3 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-07
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 1


Query: 1  MASFSFRSLLTLSA--IFRSVLIIYGEWQDAHMEVRYTDVDYIVFSDAASLRSTYSNTYT 60
          MAS   R  L   A  + R++L++YG WQDAH  V+YTD+DY+VF+DAA   S   + Y 
Sbjct: 1  MASLFERPSLVFGAAIVLRAILLVYGAWQDAHSAVKYTDIDYMVFTDAARYVSKGDSPYA 60

Query: 61 MRPVVTSCILVW 71
                + +L W
Sbjct: 61 RDTYRYTPLLAW 72

[Close]

BLAST of CmaCh19G007590 vs. Swiss-Prot
Match: GPI14_ASPFU (GPI mannosyltransferase 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=gpi14 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.5e-07
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 1


Query: 1  MASF--SFRSLLTLSAIFRSVLIIYGEWQDAHMEVRYTDVDYIVFSDAASL----RSTYS 60
          M SF  S   ++  S   R+VL++YG WQDAH  ++YTD+DY VF+DAA       S Y+
Sbjct: 1  MTSFFDSPSKVIGASIALRAVLLVYGAWQDAHSPIKYTDIDYFVFTDAARYVSRGASPYA 60

Query: 61 -NTYTMRPVVTSCILVWTSDS 75
           +TY   P++   +L  T DS
Sbjct: 61 RDTYRYTPLLAWLLLPTTWDS 81

[Close]

BLAST of CmaCh19G007590 vs. Swiss-Prot
Match: GPI14_EMENI (GPI mannosyltransferase 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=gpi14 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.2e-07
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1


Query: 12 LSAIFRSVLIIYGEWQDAHMEVRYTDVDYIVFSDAASLRSTYSNTYTMRPVVTSCILVW 71
          L+A  R+VL+ YG WQDAH  V+YTD+DY+VF+DA+   S   + Y       + +L W
Sbjct: 14 LAAGLRTVLLFYGAWQDAHSAVKYTDIDYMVFTDASRYVSQGDSPYARDTYRYTPLLAW 72

[Close]

BLAST of CmaCh19G007590 vs. Swiss-Prot
Match: PIGM_DICDI (GPI mannosyltransferase 1 OS=Dictyostelium discoideum GN=pigm PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.1e-06
Identity = 27/72 (37.50%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 7  RSLLTLSAIFRSVLIIYGEWQDAHMEVRYTDVDYIVFSDAASL---------RSTYSNTY 66
          +S+  +  + R VLI++ EWQDA+M V+YTD+DY+V++DA+           RSTY  T 
Sbjct: 26 KSIFIVGLVIRLVLIVFAEWQDANMLVKYTDIDYVVYTDASRAVVNGLSPYDRSTYRYTP 85

Query: 67 TMRPVVTSCILV 70
           +  ++   IL+
Sbjct: 86 LLAYLLVPNILI 97

[Close]

BLAST of CmaCh19G007590 vs. TrEMBL
Match: A0A0A0K625_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G017690 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.5e-15
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1


Query: 1  MASFSFRSLLTLSAIFRSVLIIYGEWQDAHMEVRYTDVDYIVFSDAASLRSTYSNTY 58
          MASFSF SLL LSAIFR VLI+YGEWQDA+MEVRYTDVDYIVFSDAASL ++  + Y
Sbjct: 1  MASFSFGSLLILSAIFRFVLILYGEWQDANMEVRYTDVDYIVFSDAASLMASGKSPY 57

[Close]

BLAST of CmaCh19G007590 vs. TrEMBL
Match: V4T2R4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001079mg PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 9.5e-14
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 1


Query: 1  MASFSFRSLLTLSAIFRSVLIIYGEWQDAHMEVRYTDVDYIVFSDAASLRSTYSNTY 58
          M S + RSLL LSAIFR++LI+YGEWQD+HMEVRYTDVDY+VFSDAASL ++  + Y
Sbjct: 28 MISINIRSLLWLSAIFRAILIVYGEWQDSHMEVRYTDVDYLVFSDAASLMASGDSPY 84

[Close]

BLAST of CmaCh19G007590 vs. TrEMBL
Match: V7BX38_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G043300g PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-13
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 1  MASFSFRSLLTLSAIFRSVLIIYGEWQDAHMEVRYTDVDYIVFSDAASLRSTYSNTY 58
          MAS   RSLL  SAIFR +LI+YGEWQDAHMEVRYTDVDY+VFSDAA+L +   + Y
Sbjct: 1  MASLDIRSLLVFSAIFRVILIVYGEWQDAHMEVRYTDVDYLVFSDAAALMAVGDSPY 57

[Close]

BLAST of CmaCh19G007590 vs. TrEMBL
Match: A0A067DNE5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012470mg PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-13
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 1


Query: 1  MASFSFRSLLTLSAIFRSVLIIYGEWQDAHMEVRYTDVDYIVFSDAASLRSTYSNTY 58
          M S + RSLL LSAIFR +LI+YGEWQD+HMEVRYTDVDY+VFSDAASL ++  + Y
Sbjct: 28 MISINIRSLLWLSAIFRVILIVYGEWQDSHMEVRYTDVDYLVFSDAASLMASGDSPY 84

[Close]

BLAST of CmaCh19G007590 vs. TrEMBL
Match: A0A067DZE4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012470mg PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-13
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 1


Query: 1  MASFSFRSLLTLSAIFRSVLIIYGEWQDAHMEVRYTDVDYIVFSDAASLRSTYSNTY 58
          M S + RSLL LSAIFR +LI+YGEWQD+HMEVRYTDVDY+VFSDAASL ++  + Y
Sbjct: 28 MISINIRSLLWLSAIFRVILIVYGEWQDSHMEVRYTDVDYLVFSDAASLMASGDSPY 84

[Close]

BLAST of CmaCh19G007590 vs. TAIR10
Match: AT5G22130.2 (AT5G22130.2 mannosyltransferase family protein)

HSP 1 Score: 76.6 bits (187), Expect = 7.6e-15
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1


Query: 6  FRSLLTLSAIFRSVLIIYGEWQDAHMEVRYTDVDYIVFSDAASLRSTYSNTY 58
          FRSLL  S + R  LI+YGEWQDAHMEVRYTDVDYIVFSDAASL ++  + Y
Sbjct: 18 FRSLLVFSMLLRVFLIVYGEWQDAHMEVRYTDVDYIVFSDAASLMASGESPY 69

[Close]

BLAST of CmaCh19G007590 vs. NCBI nr
Match: gi|449454251|ref|XP_004144869.1| (PREDICTED: GPI mannosyltransferase 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1


Query: 1  MASFSFRSLLTLSAIFRSVLIIYGEWQDAHMEVRYTDVDYIVFSDAASLRSTYSNTY 58
          MASFSF SLL LSAIFR VLI+YGEWQDA+MEVRYTDVDYIVFSDAASL ++  + Y
Sbjct: 1  MASFSFGSLLILSAIFRFVLILYGEWQDANMEVRYTDVDYIVFSDAASLMASGKSPY 57

[Close]

BLAST of CmaCh19G007590 vs. NCBI nr
Match: gi|778723116|ref|XP_011658612.1| (PREDICTED: GPI mannosyltransferase 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1


Query: 1  MASFSFRSLLTLSAIFRSVLIIYGEWQDAHMEVRYTDVDYIVFSDAASLRSTYSNTY 58
          MASFSF SLL LSAIFR VLI+YGEWQDA+MEVRYTDVDYIVFSDAASL ++  + Y
Sbjct: 1  MASFSFGSLLILSAIFRFVLILYGEWQDANMEVRYTDVDYIVFSDAASLMASGKSPY 57

[Close]

BLAST of CmaCh19G007590 vs. NCBI nr
Match: gi|659094146|ref|XP_008447909.1| (PREDICTED: GPI mannosyltransferase 1 isoform X2 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1


Query: 1  MASFSFRSLLTLSAIFRSVLIIYGEWQDAHMEVRYTDVDYIVFSDAASLRSTYSNTY 58
          MASFSF SLL LSAIFR VLI+YGEWQDA+MEVRYTDVDYIVFSDAASL ++  + Y
Sbjct: 1  MASFSFGSLLILSAIFRFVLILYGEWQDANMEVRYTDVDYIVFSDAASLMASGKSPY 57

[Close]

BLAST of CmaCh19G007590 vs. NCBI nr
Match: gi|659094144|ref|XP_008447908.1| (PREDICTED: GPI mannosyltransferase 1 isoform X1 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1


Query: 1  MASFSFRSLLTLSAIFRSVLIIYGEWQDAHMEVRYTDVDYIVFSDAASLRSTYSNTY 58
          MASFSF SLL LSAIFR VLI+YGEWQDA+MEVRYTDVDYIVFSDAASL ++  + Y
Sbjct: 1  MASFSFGSLLILSAIFRFVLILYGEWQDANMEVRYTDVDYIVFSDAASLMASGKSPY 57

[Close]

BLAST of CmaCh19G007590 vs. NCBI nr
Match: gi|567879683|ref|XP_006432400.1| (hypothetical protein CICLE_v10001079mg [Citrus clementina])

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 1


Query: 1  MASFSFRSLLTLSAIFRSVLIIYGEWQDAHMEVRYTDVDYIVFSDAASLRSTYSNTY 58
          M S + RSLL LSAIFR++LI+YGEWQD+HMEVRYTDVDY+VFSDAASL ++  + Y
Sbjct: 28 MISINIRSLLWLSAIFRAILIVYGEWQDSHMEVRYTDVDYLVFSDAASLMASGDSPY 84

The following BLAST results are available for this feature:

BLAST of CmaCh19G007590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PIGM_ARATH	1.4e-13	71.15	GPI mannosyltransferase 1 OS=Arabidopsis thaliana GN=PIGM PE=2 SV=1	[more]
GPI14_ASPOR	1.9e-07	41.67	GPI mannosyltransferase 1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=...	[more]
GPI14_ASPFU	5.5e-07	41.98	GPI mannosyltransferase 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 ...	[more]
GPI14_EMENI	7.2e-07	44.07	GPI mannosyltransferase 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / ...	[more]
PIGM_DICDI	2.1e-06	37.50	GPI mannosyltransferase 1 OS=Dictyostelium discoideum GN=pigm PE=3 SV=1	[more]

BLAST of CmaCh19G007590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K625_CUCSA	8.5e-15	78.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G017690 PE=4 SV=1	[more]
V4T2R4_9ROSI	9.5e-14	70.18	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001079mg PE=4 SV=1	[more]
V7BX38_PHAVU	1.6e-13	70.18	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G043300g PE=4 SV=1	[more]
A0A067DNE5_CITSI	2.1e-13	70.18	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012470mg PE=4 SV=1	[more]
A0A067DZE4_CITSI	2.1e-13	70.18	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012470mg PE=4 SV=1	[more]

BLAST of CmaCh19G007590 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22130.2	7.6e-15	71.15	mannosyltransferase family protein	[more]

BLAST of CmaCh19G007590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454251\|ref\|XP_004144869.1\|	1.2e-14	78.95	PREDICTED: GPI mannosyltransferase 1 isoform X1 [Cucumis sativus]	[more]
gi\|778723116\|ref\|XP_011658612.1\|	1.2e-14	78.95	PREDICTED: GPI mannosyltransferase 1 isoform X2 [Cucumis sativus]	[more]
gi\|659094146\|ref\|XP_008447909.1\|	1.2e-14	78.95	PREDICTED: GPI mannosyltransferase 1 isoform X2 [Cucumis melo]	[more]
gi\|659094144\|ref\|XP_008447908.1\|	1.2e-14	78.95	PREDICTED: GPI mannosyltransferase 1 isoform X1 [Cucumis melo]	[more]
gi\|567879683\|ref\|XP_006432400.1\|	1.4e-13	70.18	hypothetical protein CICLE_v10001079mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007704	Mannosyltransferase_DXD

Vocabulary: **Molecular Function**
Term	Definition
GO:0016758	transferase activity, transferring hexosyl groups

Vocabulary: **Biological Process**
Term	Definition
GO:0006506	GPI anchor biosynthetic process

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006506	GPI anchor biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016758	transferase activity, transferring hexosyl groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G007590.1	CmaCh19G007590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007704	Mannosyltransferase, DXD	PANTHER	PTHR12886	PIG-M MANNOSYLTRANSFERASE	coord: 4..47 score: 6.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh19G007590	Cucsa.099160	Cucumber (Gy14) v1	cgycmaB0216
CmaCh19G007590	Cla015796	Watermelon (97103) v1	cmawmB503
CmaCh19G007590	Csa7G017690	Cucumber (Chinese Long) v2	cmacuB527
CmaCh19G007590	ClCG02G003800	Watermelon (Charleston Gray)	cmawcgB460
CmaCh19G007590	CSPI07G01290	Wild cucumber (PI 183967)	cmacpiB533
CmaCh19G007590	CmoCh19G007720	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G007590	CmoCh11G017610	Cucurbita moschata (Rifu)	cmacmoB492
CmaCh19G007590	Lsi11G012290	Bottle gourd (USVL1VR-Ls)	cmalsiB472
CmaCh19G007590	Cp4.1LG15g06050	Cucurbita pepo (Zucchini)	cmacpeB522
CmaCh19G007590	Cp4.1LG04g04700	Cucurbita pepo (Zucchini)	cmacpeB537
CmaCh19G007590	MELO3C013319.2	Melon (DHL92) v3.6.1	cmamedB536
CmaCh19G007590	CsaV3_7G001350	Cucumber (Chinese Long) v3	cmacucB0638
CmaCh19G007590	Cla97C02G030590	Watermelon (97103) v2	cmawmbB531
CmaCh19G007590	Bhi05G001440	Wax gourd	cmawgoB0652
CmaCh19G007590	CsGy7G001110	Cucumber (Gy14) v2	cgybcmaB944
CmaCh19G007590	Carg26369	Silver-seed gourd	carcmaB1452

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh19G007590	CmaCh11G013570	Cucurbita maxima (Rimu)	cmacmaB151

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G007590	Cucurbita maxima (Rimu)	cmacmaB448
CmaCh19G007590	Cucurbita moschata (Rifu)	cmacmoB522
CmaCh19G007590	Melon (DHL92) v3.5.1	cmameB462
CmaCh19G007590	Watermelon (Charleston Gray)	cmawcgB461
CmaCh19G007590	Cucurbita pepo (Zucchini)	cmacpeB552
CmaCh19G007590	Silver-seed gourd	carcmaB1119
CmaCh19G007590	Silver-seed gourd	carcmaB1470