CmaCh19G006780 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G006780
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	GIANT CHLOROPLAST 1 family protein
Location	Cma_Chr19 : 7059665 .. 7064742 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGTTCTCTCATGTTGGGGGAGGTTTTGTTTCATCCGCCCTTTTGTGAATATGGTCTTGTTCATTGGCAATTTGCATGCTAGCTGTTTTCTTTCTTTTTCTTTTTCCTGTCTTGTTAGCTCTGTGGTTCGTTAGGTTCTTTGTGAGATGTTTTTGTAAGCCGTTTTGAGCTCTTTCATTTTTCTCAGCTCGATTTCTTGATTAAAAAGAACTTTCTTGCAGAAAAATCAGTTCACTGTATCAATAACTGGAGCTACAGGCTTTATCGGTCGAAGACTTGTGCAAAGGCTACATACAGGTTATATTCAATACATCAACCTAGGCATAAAAGCTTACCAAAAAATTTCACAAATCATATCTTTAACCTTTTACTCCAATCTACTTCTCACACATAAAAGCTTACCAAAAAATTTCACAAATCATATCTTTAACCTTTTACTCCAATCTACTTCTCACAATATAGTGGATGAACAACTGATTGAGAATTCTTTGTTGTGTTGCTGGTTATAGATAACCATAACATTCGAGTTTTGACACGCTCTAAATCTAAAGCCGAGTTGATTTTTCCGGGTAAGAAGGTAACTCATGTCAATAGTCATTCATTTTTTACTGTACCTTTTGACTTGTCTTCTCTCTAACTTTTGAACATCATCCCAAAACTTGTAGCTAGGGAGTTTCCAGGAATTGTGATCGCAGAGGAGCCAGGGTGGAAAGACTGCATCCAAGGTTCAGATGGCGTTGTTAACTTGGCTGGGTTGCCTATAAGTACCAGGTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTAATAATAAGCTGTTCGAATAGGGTACTAATTACTCTACTCGAATAGTACTTATAATCAATCTTGGAATGGAGCTTAACATTTGGAATCTTTTAAGGTGGCACTAGATATGTCCATAACTGGAGACACGTCAGTTTTAGATAAATACTCGCACTCTTTATTAAGACCAATCGAGAAGAGATTACAAGACACTCTATAAAAATTACTGCACTCTATGCTTTGTATTTCTTGGGGATGAAAATATTGGTAGAGTGAAGGGGTATTTATAACAGAGGCTAGACAATTTATTGCTAAAATACCTATATCGTTTTCCTAAAATATATAGACAATGGGCTCATAAGATTATTCGACTTGATCTTATTGAACTTGTGATGATATTTTAACTTTTTGATTCATGCTATGCTTTAGATCAGTTCATCCAACTGTTTGTGGCAGTATGATGAAACAACNNNNNNNNNNTATAGATCAAGAAAGAGATCAAGCAAAGCAGGATCAGAGTCACCTCAAAGGTAAAAACTTGTCCCGCTAACTATAGAGTTTTTGCAAACAGTTTAAGAGACTTCTTCCCTTTCTAGCTTTTACAGAAGCCAAATCTGATATATACCAATATTTAATACTTAACTAATGTGAAGGTTGTGAGCTTAATTAACGATGCCCCCGACGTAGCTCGCCCGACAGTTTTGGTTAGCGCAACAGCTATTGGTTACTATGGTATGTGTTATATATCTGAAAGAACATATGTCAATATCTAGATTAGCTTAGAAATATAGGAATATTCAAAGAAAAAATTATCAACGATTGAGTAGAGTTCAATCGAACGGTTGTGAATTTTCATCCTTTTCCTTATAGGCTGCCTATTTTCTCAGTCTCAACGTGAGAATTATGAAGCTCATATTCATAATCATAATTATACTTAGAACTATTCTATATCTCTCAGGCACTAGTGAAACAGCAATATTTGACGAACGAAGTCCATCCGGAAATGACTACTTGGCCGAGGTGAGAAAAGTTGTTAGATTGAGGTAATTGAAGAGGAATTGTTGGATTTTTTAATTTTTTTCTTTGAAATCGAACAGGAAAATAATTAAATCGCGATAGAGCTAGTAAAACTTAAAACTTAAGATTGTTTGAAATGACTTCCTAAGTATTTGAAAACACTTCTTTGCACTTAAAAAAGTCGTTCTAAACAAACTCTTAATCCTCCTCTAATTCACTCAATGATTGTCTAGTGTGAAGCGGTTTGTTGACGAGCATTAAGATTTCGTAATCGTCATATATTGAAAATTTTCATACAATCCTAAGCTCGTGTAATATTTTGTGAACTTTCATTTCTGTTGTTTGATGACTGATTTTCCAGGTTTGTAGGGAATGGGAAGCAACAGCCCTGGGAGCAAACAAGAACGTCAGAGTGGCTCTTATTCGTATAGGTGTTGTTCTTGGTAAAGAAGGTGGTGCTTTAGGTATGGGAGTTTAACCTCATTATGTTCATTATTCATTCTTAATTATTTGGTTCAACTTTTATCTATTTTATTATCTATACTTCTTAAACATCCATATTTGGATAAAAGAGAATGTTTATTTTAGTTCATGTACTTTTTAAAAACAATCGTTTTAAACCATTCTTTTTTTTTTTTTTTAATCTTAGTTTTTCGATCACGATTAGTTTTGTATTGAATGCATAGGGTTTTACAAACACAAACAAAAAAAAAAGGACTTTTTATAGAAGTGTAGAACTAAAATATGACAACCAATCATTTTTTGAATCATATTCATCTTTTTGTGCCTTTGCAGCCAAAATGATCCCACTCTTCAATCTGTTTGCTGGAGGCCCTTTGGGGTCAGGACGACAATGGTAAATATTCTCTCTTTTTATGCCTCAATTATGTGATGAGTTGAAATGAAAGACATTTTTACCACTCTGACAAAATATTAGTAATTTTAAATTTTACCTCCATGATGATTGTTGTGATGTCTCGAAAAACTTAGAAATTAATTCACTTTTATTCCTACCAAAATTCATTTATTAAAAAATTGAACTCAGACTAGAGTTTTGCCTACTAAAATTCTTTCACTCAAAATCATGATCTATAAAAGCCCTGTAACACAAAATTCTTCATACTAATAGAGATATTTAAAGAATCATTTATGGACAAACATTTATAATACATATTATTTTAAAAAAATTACAGATTCACCTGAAAACTTTAATTCCTAAATTCCCAAACCTCTCAACTACTTTTCGGATTAAAACAAAAAAAAAAAAGGAGACAATTTGGCCCATTTTTTGTCGATTAGTCCATGAAATATATGTTTTAGGTTGTTCGTTTGTGATAGTTAGCTTTCTACTTTTTCCAGAAAATTTTGATTCCCGGTTTAATTTAATATTAAAGTGGGTTTTGCAGGTTTTCCTGGATTCACTTGGATGACATTGTAAACTTAATATATGAAGCTCTGACCAATCCATCTTACAACGGTAATATTTTCATTTGACATAGTTGCTTCGTAAAACATTACTAAAATAATAACTAATTTCAAATATTAATACTAATGATCCATTATTTTATCTTAACATTATTTTAATACCTATTATACATTTTATAAGTTCAAAATAATTATTAAAAAATGTTTTTCTAATATTTTTTTTTTTAAAAAAAAGAAAAACTAAGATTAAATATATTACTAATGGATACTGGATAATGGATAATTATTTGGTTTTTAAGAGTATTTGATAATAATTGTGTTTCTTTTTTTCAAAAAAAAAAAAAGTTCTAAATAAATATATGAATTATAGTCCAATTTCAAAGAAATAAAATAAAAAATTTAAAACTAAAAAAGAAAATCTAAACAAAAAAAAGAGAAATCAATCATAATCGAACAGAATCTGAACTCTGGTGTCTCTAACAAACAATCCTCAGGAGTTATAGAAATCAATCATAATCGAACAGAATCTGAACTCTGGTGTCTCTAACAAACAATCCTCAGGAGTTATAAATGGAACGGCGCCGAACCCGGTTAAGTTGGCCGAATTATGCGAACGATTGGGAGCTGCGATGGGCAGACCTTCATGGCTTCCTGTACCTGACTTTGCTCTCAAAGCCGTCCTTGGGGAAGGAGCTTCTGTGGTGAGATTACTAATAATATCCCTACTACCTTCTTTCATTAATACAAATCTCCCTTTTTATGCCTCTCTAAGCTTTCAAATTGTTTATTTTCTTCATTTAGAAAGTTTGTATCTGAGACGACAAGGTTTACAAAATGTCAGAACAAAGCACACGCCCCTCTTGTGTGCATAACAAATTCATAAATTTTGAAAACAATAATTAATAAGCCTAATTATTAAACACACAATTAATAATGAAAATAAATGAGTTAAATACTTTCAAGAACCCAAAGGCCTACTAAATCATTTTAAAAATTTATGTACTAAACTTGTGCTATAACTTAAAACTATAAAAAAATCCGAAGTTAAATTACCTTTTTTTTTCTTTTTTTTTTTTTTGTCAATATACCTTAAAAAATAGTTTATGATTGATTTTTTTAAAATAAAAAAGCCTCTTGTAGCATCCTGTTCTATAAATTTTAGAAATGTACTCCCATAGTATCTTTTCTGTTATTTAAATTATTATTAATTTTCATAAAAATTAATTGGAAGGACTGAATTTAAGATTAATTGCAAGAAGTAAAGATCTAAGATGGAATTGAATGTGTATAGAGGCCAAAATAATGTTAGCCAAACTCCTATTTTAAGTTGAGCTGGCCTTTGCTACAGGTTTTGGAGGGTCAACGGGTGGTTCCCACGAGAGCCAAGGAACTGGGTTTTACATTCAAGTACCCGACTGTGAAAGAGGCACTCAAGGCCATTCTCTCCTAAGTGTGTCTTCCATTCTTATTAAATTCTTTTCTTCTCTTTTCTTTTTTGTTATGACTTTAATTGTGATGTAGTTTTGTATTTTATTTATTGGTTTTTGGTTTCCTTCTCAAATACAATGGACGCAGACAAGATTAGATTGTAGTGGAGAAGGAGATCAAATATTTGGTCATAAAGCTATGGGCATAACTGAGGCACGACTTTTAACTACATTAGGAGCTTCTGTTGGCTATGAAACGGCCGCGTAAATGTGTATTCCAACAACTTAGAGCTAAATTAAATATATTTATAGGCATGGATATTAGACAATCAAATCAACCTCTCAGCGAGTACCTTTTTCCAGAGAAGGCCTGAAATTTGGGCTCTTCCTTTCCAGGCTGCTCTTGTTTACTCTCTTTCGAGGC

mRNA sequence

TCGTTCTCTCATGTTGGGGGAGAAAAATCAGTTCACTGTATCAATAACTGGAGCTACAGGCTTTATCGGTCGAAGACTTGTGCAAAGGCTACATACAGATAACCATAACATTCGAGTTTTGACACGCTCTAAATCTAAAGCCGAGTTGATTTTTCCGGCTAGGGAGTTTCCAGGAATTGTGATCGCAGAGGAGCCAGGGTGGAAAGACTGCATCCAAGGTTCAGATGGCGTTGTTAACTTGGCTGGGTTGCCTATAAGTGGCACTAGATATGTCCATAACTGGAGACACATCAAGAAAGAGATCAAGCAAAGCAGGATCAGAGTCACCTCAAAGGTTGTGAGCTTAATTAACGATGCCCCCGACGTAGCTCGCCCGACAGTTTTGGTTAGCGCAACAGCTATTGGTTACTATGGCACTAGTGAAACAGCAATATTTGACGAACGAAGTCCATCCGGAAATGACTACTTGGCCGAGGTTTGTAGGGAATGGGAAGCAACAGCCCTGGGAGCAAACAAGAACGTCAGAGTGGCTCTTATTCGTATAGGTGTTGTTCTTGGTAAAGAAGGTGGTGCTTTAGCCAAAATGATCCCACTCTTCAATCTGTTTGCTGGAGGCCCTTTGGGGTCAGGACGACAATGGTTTTCCTGGATTCACTTGGATGACATTGTAAACTTAATATATGAAGCTCTGACCAATCCATCTTACAACGGAGTTATAAATGGAACGGCGCCGAACCCGGTTAAGTTGGCCGAATTATGCGAACGATTGGGAGCTGCGATGGGCAGACCTTCATGGCTTCCTGTACCTGACTTTGCTCTCAAAGCCGTCCTTGGGGAAGGAGCTTCTGTGGTTTTGGAGGGTCAACGGGTGGTTCCCACGAGAGCCAAGGAACTGGGTTTTACATTCAAGTACCCGACTGTGAAAGAGGCACTCAAGGCCATTCTCTCCTAAGTGTGTCTTCCATTCTTATTAAATTCTTTTCTTCTCTTTTCTTTTTTGTTATGACTTTAATTGTGATGTAGTTTTGTATTTTATTTATTGGTTTTTGGTTTCCTTCTCAAATACAATGGACGCAGACAAGATTAGATTGTAGTGGAGAAGGAGATCAAATATTTGGTCATAAAGCTATGGGCATAACTGAGGCACGACTTTTAACTACATTAGGAGCTTCTGTTGGCTATGAAACGGCCGCGTAAATGTGTATTCCAACAACTTAGAGCTAAATTAAATATATTTATAGGCATGGATATTAGACAATCAAATCAACCTCTCAGCGAGTACCTTTTTCCAGAGAAGGCCTGAAATTTGGGCTCTTCCTTTCCAGGCTGCTCTTGTTTACTCTCTTTCGAGGC

Coding sequence (CDS)

ATGTTGGGGGAGAAAAATCAGTTCACTGTATCAATAACTGGAGCTACAGGCTTTATCGGTCGAAGACTTGTGCAAAGGCTACATACAGATAACCATAACATTCGAGTTTTGACACGCTCTAAATCTAAAGCCGAGTTGATTTTTCCGGCTAGGGAGTTTCCAGGAATTGTGATCGCAGAGGAGCCAGGGTGGAAAGACTGCATCCAAGGTTCAGATGGCGTTGTTAACTTGGCTGGGTTGCCTATAAGTGGCACTAGATATGTCCATAACTGGAGACACATCAAGAAAGAGATCAAGCAAAGCAGGATCAGAGTCACCTCAAAGGTTGTGAGCTTAATTAACGATGCCCCCGACGTAGCTCGCCCGACAGTTTTGGTTAGCGCAACAGCTATTGGTTACTATGGCACTAGTGAAACAGCAATATTTGACGAACGAAGTCCATCCGGAAATGACTACTTGGCCGAGGTTTGTAGGGAATGGGAAGCAACAGCCCTGGGAGCAAACAAGAACGTCAGAGTGGCTCTTATTCGTATAGGTGTTGTTCTTGGTAAAGAAGGTGGTGCTTTAGCCAAAATGATCCCACTCTTCAATCTGTTTGCTGGAGGCCCTTTGGGGTCAGGACGACAATGGTTTTCCTGGATTCACTTGGATGACATTGTAAACTTAATATATGAAGCTCTGACCAATCCATCTTACAACGGAGTTATAAATGGAACGGCGCCGAACCCGGTTAAGTTGGCCGAATTATGCGAACGATTGGGAGCTGCGATGGGCAGACCTTCATGGCTTCCTGTACCTGACTTTGCTCTCAAAGCCGTCCTTGGGGAAGGAGCTTCTGTGGTTTTGGAGGGTCAACGGGTGGTTCCCACGAGAGCCAAGGAACTGGGTTTTACATTCAAGTACCCGACTGTGAAAGAGGCACTCAAGGCCATTCTCTCCTAA

Protein sequence

MLGEKNQFTVSITGATGFIGRRLVQRLHTDNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPGWKDCIQGSDGVVNLAGLPISGTRYVHNWRHIKKEIKQSRIRVTSKVVSLINDAPDVARPTVLVSATAIGYYGTSETAIFDERSPSGNDYLAEVCREWEATALGANKNVRVALIRIGVVLGKEGGALAKMIPLFNLFAGGPLGSGRQWFSWIHLDDIVNLIYEALTNPSYNGVINGTAPNPVKLAELCERLGAAMGRPSWLPVPDFALKAVLGEGASVVLEGQRVVPTRAKELGFTFKYPTVKEALKAILS

Homology

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BLAST of CmaCh19G006780 vs. Swiss-Prot
Match: GC1_ARATH (Epimerase family protein SDR39U1 homolog, chloroplastic OS=Arabidopsis thaliana GN=GC1 PE=2 SV=2)

HSP 1 Score: 489.6 bits (1259), Expect = 2.6e-137
Identity = 241/309 (77.99%), Postives = 273/309 (88.35%), Query Frame = 1


Query: 4   EKNQFTVSITGATGFIGRRLVQRLHTDNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPG 63
           +++Q TVS+TGATGFIGRRLVQRL  DNH IRVLTRSKSKAE IFPA++FPGIVIAEE  
Sbjct: 42  KESQMTVSVTGATGFIGRRLVQRLRADNHAIRVLTRSKSKAEQIFPAKDFPGIVIAEESE 101

Query: 64  WKDCIQGSDGVVNLAGLPISGTRYVHNWRHIKKEIKQSRIRVTSKVVSLINDAPDVARPT 123
           WK+C+QGS  VVNLAGLPIS TR+      IKKEIK SRIRVTSKVV LIN++P  ARPT
Sbjct: 102 WKNCVQGSTAVVNLAGLPIS-TRWSPE---IKKEIKGSRIRVTSKVVDLINNSPAEARPT 161

Query: 124 VLVSATAIGYYGTSETAIFDERSPSGNDYLAEVCREWEATALGANKNVRVALIRIGVVLG 183
           VLVSATA+GYYGTSET +FDE SPSG DYLAEVCREWE TAL ANK+VRVALIRIGVVLG
Sbjct: 162 VLVSATAVGYYGTSETGVFDENSPSGKDYLAEVCREWEGTALKANKDVRVALIRIGVVLG 221

Query: 184 KEGGALAKMIPLFNLFAGGPLGSGRQWFSWIHLDDIVNLIYEALTNPSYNGVINGTAPNP 243
           K+GGALA MIP F +FAGGPLGSG+QWFSWIH+DD+VNLIYEALTNPSY GVINGTAPNP
Sbjct: 222 KDGGALAMMIPFFQMFAGGPLGSGQQWFSWIHVDDLVNLIYEALTNPSYKGVINGTAPNP 281

Query: 244 VKLAELCERLGAAMGRPSWLPVPDFALKAVLGEGASVVLEGQRVVPTRAKELGFTFKYPT 303
           V+L E+C++LG+ + RPSWLPVPDFALKA+LGEGA+VVLEGQ+V+P RAKELGF FKY  
Sbjct: 282 VRLGEMCQQLGSVLSRPSWLPVPDFALKALLGEGATVVLEGQKVLPVRAKELGFEFKYKY 341

Query: 304 VKEALKAIL 313
           VK+AL+AI+
Sbjct: 342 VKDALRAIM 346

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BLAST of CmaCh19G006780 vs. Swiss-Prot
Match: Y1223_SYNY3 (Epimerase family protein slr1223 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1223 PE=3 SV=2)

HSP 1 Score: 285.0 bits (728), Expect = 9.7e-76
Identity = 154/310 (49.68%), Postives = 196/310 (63.23%), Query Frame = 1


Query: 10  VSITGATGFIGRRLVQRLHTDNHNIRVLTRSKSKAELIFPAREFPGI-VIAEEP----GW 69
           + +TGATGF+G  LV  LH   H + +L RS SKA+ +F    FP +  IA E      W
Sbjct: 3   IILTGATGFVGCSLVPLLHQQGHELTLLVRSVSKAQRLFAPGSFPQLKAIAYEATKSGDW 62

Query: 70  KDCIQGSDGVVNLAGLPISGTRYVHNWRHI-KKEIKQSRIRVTSKVVSLINDAPDVARPT 129
           +  + G D V+NLAG PIS       W    K EI  SR   T K+V  I  A    +P 
Sbjct: 63  QKVVDGQDAVINLAGEPIS-----ERWTEAYKAEIFDSRKLGTEKLVEAIAKAD--RKPQ 122

Query: 130 VLVSATAIGYYGTSETAIFDERSPSGNDYLAEVCREWEATALGANK-NVRVALIRIGVVL 189
           V++S +AIGYYGTSETA F E S  G+D+LAEVC+ WE  A    +  VR+ + RIG+VL
Sbjct: 123 VMISGSAIGYYGTSETATFTESSKPGDDFLAEVCQAWENAAHQVEQLGVRLVVFRIGIVL 182

Query: 190 GKEGGALAKMIPLFNLFAGGPLGSGRQWFSWIHLDDIVNLIYEALTNPSYNGVINGTAPN 249
           G +GGALAKM+P F LFAGGPLGSG QWFSWI   D++ LI +ALT+ +  G  N TAPN
Sbjct: 183 GADGGALAKMLPPFKLFAGGPLGSGEQWFSWIDRRDLIALIDKALTDSTLRGTYNATAPN 242

Query: 250 PVKLAELCERLGAAMGRPSWLPVPDFALKAVLGEGASVVLEGQRVVPTRAKELGFTFKYP 309
           PVK+ E C  LG  + RPSWLPVPD AL+ +LGEGA +VLEGQ V+P    +  F F+ P
Sbjct: 243 PVKMKEFCHTLGKVLARPSWLPVPDIALELLLGEGAKLVLEGQEVLPGAISKTDFQFQAP 302

Query: 310 TVKEALKAIL 313
            ++ +L+ IL
Sbjct: 303 DLETSLRQIL 305

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BLAST of CmaCh19G006780 vs. Swiss-Prot
Match: YFCH_ECOLI (Epimerase family protein YfcH OS=Escherichia coli (strain K12) GN=yfcH PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 4.2e-55
Identity = 124/306 (40.52%), Postives = 176/306 (57.52%), Query Frame = 1


Query: 10  VSITGATGFIGRRLVQRLHTDNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPGWKDCIQ 69
           + ITG TG IGR L+ RL    H I V+TR+  KA  +   R      +A++      + 
Sbjct: 3   IVITGGTGLIGRHLIPRLLELGHQITVVTRNPQKASSVLGPRVTLWQGLADQSN----LN 62

Query: 70  GSDGVVNLAGLPISGTRYVHNWRHIKKEIKQSRIRVTSKVVSLIN--DAPDVARPTVLVS 129
           G D V+NLAG PI+  R+ H     K+ + QSR  +T K+V LIN  D P    P+VL+S
Sbjct: 63  GVDAVINLAGEPIADKRWTHEQ---KERLCQSRWNITQKLVDLINASDTP----PSVLIS 122

Query: 130 ATAIGYYGTSETAIFDERSPSGNDYLAEVCREWEATALGANKN-VRVALIRIGVVLGKEG 189
            +A GYYG     +  E  P  N++  ++C  WE  A  A  +  RV L+R GVVL  +G
Sbjct: 123 GSATGYYGDLGEVVVTEEEPPHNEFTHKLCARWEEIACRAQSDKTRVCLLRTGVVLAPDG 182

Query: 190 GALAKMIPLFNLFAGGPLGSGRQWFSWIHLDDIVNLIYEALTNPSYNGVINGTAPNPVKL 249
           G L KM+P F L  GGP+GSGRQ+ +WIH+DD+VN I   L N    G  N  +P PV+ 
Sbjct: 183 GILGKMLPPFRLGLGGPIGSGRQYLAWIHIDDMVNGILWLLDN-ELRGPFNMVSPYPVRN 242

Query: 250 AELCERLGAAMGRPSWLPVPDFALKAVLGEGASVVLEGQRVVPTRAKELGFTFKYPTVKE 309
            +    LG A+ RP+ L VP  A++ ++GE + +VL GQR +P R +E GF F++  ++E
Sbjct: 243 EQFAHALGHALHRPAILRVPATAIRLLMGESSVLVLGGQRALPKRLEEAGFAFRWYDLEE 296

Query: 310 ALKAIL 313
           AL  ++
Sbjct: 303 ALADVV 296

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BLAST of CmaCh19G006780 vs. Swiss-Prot
Match: D39U1_MOUSE (Epimerase family protein SDR39U1 OS=Mus musculus GN=Sdr39u1 PE=1 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.9e-47
Identity = 108/307 (35.18%), Postives = 168/307 (54.72%), Query Frame = 1


Query: 10  VSITGATGFIGRRLVQRLHTDNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPGWKDCIQ 69
           V + G TGFIG  + Q L    H +++++R      + +      G+ +           
Sbjct: 3   VLVGGGTGFIGTAVTQLLRGRGHEVKLVSRQPGPGRITWSELSESGLPLC---------- 62

Query: 70  GSDGVVNLAGLPISGTRYVHNWRH-IKKEIKQSRIRVTSKVVSLINDAPDVARPTVLVSA 129
             D V+NLAG  I     +  W    +KE+  SR+  T  +   I +     +  +LV  
Sbjct: 63  --DVVINLAGENILNP--LRRWNETFQKEVLTSRLDTTHLLAKAITETAHPPQAWILV-- 122

Query: 130 TAIGYYGTSETAIFDERSPSGN-DYLAEVCREWEATALGANKNVRVALIRIGVVLGKEGG 189
           T + YY  S T  +DE SP GN D+ + +  +WEA A    ++ R  ++R GVVLG+ GG
Sbjct: 123 TGVAYYQPSLTKEYDEDSPGGNFDFFSNLVTKWEAAARLPGESTRQVVVRSGVVLGRGGG 182

Query: 190 ALAKMIPLFNLFAGGPLGSGRQWFSWIHLDDIVNLIYEALTNPSYNGVINGTAP-NPVKL 249
           A++ M+  F L  GGP+GSGRQ+F WIH+ D+  ++  AL      GV+NG AP +    
Sbjct: 183 AISHMLLPFRLGLGGPIGSGRQFFPWIHIGDLAGILNYALEANHVQGVLNGVAPASTTTN 242

Query: 250 AELCERLGAAMGRPSWLPVPDFALKAVLGEGASVVLEGQRVVPTRAKELGFTFKYPTVKE 309
           AE  + LGAA+GRP+++PVP   ++AV GE A ++LEGQ+VVP R    G+ + +P ++ 
Sbjct: 243 AEFAQALGAALGRPAFIPVPSTVVRAVFGERAIMLLEGQKVVPRRTLATGYQYSFPELRA 293

Query: 310 ALKAILS 314
           ALK +++
Sbjct: 303 ALKDVVA 293

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BLAST of CmaCh19G006780 vs. Swiss-Prot
Match: D39U1_BOVIN (Epimerase family protein SDR39U1 OS=Bos taurus GN=SDR39U1 PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 8.9e-45
Identity = 108/308 (35.06%), Postives = 161/308 (52.27%), Query Frame = 1


Query: 10  VSITGATGFIGRRLVQRLHTDNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPGWKDCIQ 69
           V + G TGFIG  L Q L    H + +++R      + +      G+             
Sbjct: 3   VLVGGGTGFIGTALTQLLKARGHEVTLISRKPGPDRITWDDLTTSGL------------P 62

Query: 70  GSDGVVNLAGLPISGTRYVHNWRH-IKKEIKQSRIRVTSKVVSLINDAPDVARPTVLVSA 129
             D  VNLAG  I     +  W    +KE+  SR+  T  +   I  AP   +  VLV  
Sbjct: 63  RCDAAVNLAGENILNP--LRRWNAAFQKEVLSSRLETTQTLARAIAKAPQPPQAWVLV-- 122

Query: 130 TAIGYYGTSETAIFDERSPSGN-DYLAEVCREWEATALGANKNVRVALIRIGVVLGKEGG 189
           T + YY  S TA +DE SP G+ D+ + +  +WEA A     + R  ++R GVVLG+ GG
Sbjct: 123 TGVAYYQPSLTAEYDEDSPGGDFDFFSNLVTKWEAAARLPGDSTRQVVVRSGVVLGRGGG 182

Query: 190 ALAKMIPLFNLFAGGPLGSGRQWFSWIHLDDIVNLIYEALTNPSYNGVINGTAP-NPVKL 249
           A+  M+  F L  GGP+GSG Q+F WIH+ D+  ++  AL      G++NG AP +    
Sbjct: 183 AIGHMLLPFRLGLGGPIGSGHQFFPWIHIRDLAGILAHALETSHVQGILNGVAPASSTTN 242

Query: 250 AELCERLGAAMGRPSWLPVPDFALKAVLG-EGASVVLEGQRVVPTRAKELGFTFKYPTVK 309
           AE    LG A+GRP+++P+P   ++AV G E A ++LEGQ+VVP R    G+ + +P + 
Sbjct: 243 AEFARALGTALGRPAFIPLPSAVVQAVFGRERAVMLLEGQKVVPRRTLAAGYRYSFPELG 294

Query: 310 EALKAILS 314
            ALK +++
Sbjct: 303 AALKEVIA 294

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BLAST of CmaCh19G006780 vs. TrEMBL
Match: A0A0A0K2D2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G006290 PE=4 SV=1)

HSP 1 Score: 548.5 bits (1412), Expect = 5.2e-153
Identity = 274/309 (88.67%), Postives = 289/309 (93.53%), Query Frame = 1


Query: 5   KNQFTVSITGATGFIGRRLVQRLHTDNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPGW 64
           KNQ TVSITGATGFIGRRLVQRLH D HNIRVLTRSKSKAELIFPAREFPGI+IAEEPGW
Sbjct: 44  KNQLTVSITGATGFIGRRLVQRLHADKHNIRVLTRSKSKAELIFPAREFPGIMIAEEPGW 103

Query: 65  KDCIQGSDGVVNLAGLPISGTRYVHNWRHIKKEIKQSRIRVTSKVVSLINDAPDVARPTV 124
           K+CIQGSDGVVNLAG+PIS TR+      IKKEIKQSRIRVTSKVVSLINDAPD ARPTV
Sbjct: 104 KNCIQGSDGVVNLAGMPIS-TRWSSE---IKKEIKQSRIRVTSKVVSLINDAPDAARPTV 163

Query: 125 LVSATAIGYYGTSETAIFDERSPSGNDYLAEVCREWEATALGANKNVRVALIRIGVVLGK 184
           LVSATA+GYYGTSETA FDERSPSGNDYLA+VCREWEATALG NKNVRVALIRIGVVLGK
Sbjct: 164 LVSATAVGYYGTSETATFDERSPSGNDYLAQVCREWEATALGVNKNVRVALIRIGVVLGK 223

Query: 185 EGGALAKMIPLFNLFAGGPLGSGRQWFSWIHLDDIVNLIYEALTNPSYNGVINGTAPNPV 244
           EGGALAKMIPLF +FAGGPLGSG+QWFSWIHLDDIVNLIYEAL NPSY GVINGTAPNPV
Sbjct: 224 EGGALAKMIPLFMMFAGGPLGSGKQWFSWIHLDDIVNLIYEALINPSYQGVINGTAPNPV 283

Query: 245 KLAELCERLGAAMGRPSWLPVPDFALKAVLGEGASVVLEGQRVVPTRAKELGFTFKYPTV 304
            L ELC+ LGA MGRPSWLPVPDFALKAVLGEGASVVLEGQ+VVPTRAKELGF++KYP+V
Sbjct: 284 TLGELCKGLGAEMGRPSWLPVPDFALKAVLGEGASVVLEGQKVVPTRAKELGFSYKYPSV 343

Query: 305 KEALKAILS 314
           K+ALK+ILS
Sbjct: 344 KDALKSILS 348

[Close]

BLAST of CmaCh19G006780 vs. TrEMBL
Match: B9HRF3_POPTR (GIANT CHLOROPLAST 1 family protein OS=Populus trichocarpa GN=POPTR_0009s12770g PE=4 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 7.8e-141
Identity = 249/310 (80.32%), Postives = 279/310 (90.00%), Query Frame = 1


Query: 4   EKNQFTVSITGATGFIGRRLVQRLHTDNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPG 63
           +  + TVS+TGATGFIG+RLVQRLH D H++RVLTRS+SKA+LIFP +EFPGI+IAEE  
Sbjct: 45  QTQKMTVSVTGATGFIGKRLVQRLHADKHSVRVLTRSRSKAQLIFPVKEFPGILIAEERD 104

Query: 64  WKDCIQGSDGVVNLAGLPISGTRYVHNWRHIKKEIKQSRIRVTSKVVSLINDAPDVARPT 123
           WKDCIQGS+ VVNLAGLPIS TR+      +KKEIKQSRI+VTSKVV LIN +P+  RP 
Sbjct: 105 WKDCIQGSNAVVNLAGLPIS-TRWSPE---VKKEIKQSRIKVTSKVVDLINGSPEGVRPA 164

Query: 124 VLVSATAIGYYGTSETAIFDERSPSGNDYLAEVCREWEATALGANKNVRVALIRIGVVLG 183
           VLVSATA+GYYG+SET +FDERSPSGNDYLAEVCREWEATAL  NK+VR+ALIRIGVVLG
Sbjct: 165 VLVSATAVGYYGSSETQVFDERSPSGNDYLAEVCREWEATALKVNKDVRLALIRIGVVLG 224

Query: 184 KEGGALAKMIPLFNLFAGGPLGSGRQWFSWIHLDDIVNLIYEALTNPSYNGVINGTAPNP 243
           K+GGALAKMIPLF LFAGGP+GSG+QWFSWIHLDDIVNLIYEALTNPSY GVINGTAPNP
Sbjct: 225 KDGGALAKMIPLFMLFAGGPMGSGQQWFSWIHLDDIVNLIYEALTNPSYKGVINGTAPNP 284

Query: 244 VKLAELCERLGAAMGRPSWLPVPDFALKAVLGEGASVVLEGQRVVPTRAKELGFTFKYPT 303
           V+LAE+CE+LG  MGRPSWLPVPDFALKAVLGEGASVVL+GQRV+PTRAKELGF FKYP 
Sbjct: 285 VRLAEMCEQLGNVMGRPSWLPVPDFALKAVLGEGASVVLDGQRVLPTRAKELGFQFKYPQ 344

Query: 304 VKEALKAILS 314
           VK+ALK ILS
Sbjct: 345 VKDALKTILS 350

[Close]

BLAST of CmaCh19G006780 vs. TrEMBL
Match: M5VPC5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007916mg PE=4 SV=1)

HSP 1 Score: 507.7 bits (1306), Expect = 1.0e-140
Identity = 250/308 (81.17%), Postives = 277/308 (89.94%), Query Frame = 1


Query: 6   NQFTVSITGATGFIGRRLVQRLHTDNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPGWK 65
           N  TVSITGATGFIGRRLVQRLH DNH++ VLTRSKSKAELIFP +EFPGIVIAEEP WK
Sbjct: 46  NTMTVSITGATGFIGRRLVQRLHADNHSVHVLTRSKSKAELIFPVKEFPGIVIAEEPEWK 105

Query: 66  DCIQGSDGVVNLAGLPISGTRYVHNWRHIKKEIKQSRIRVTSKVVSLINDAPDVARPTVL 125
           D I+GS+GVVNLAG+PIS TR+      IKKEIK SRIRVTSKVV LIND PD  RPTVL
Sbjct: 106 DSIRGSNGVVNLAGVPIS-TRWSPE---IKKEIKDSRIRVTSKVVDLINDLPDSVRPTVL 165

Query: 126 VSATAIGYYGTSETAIFDERSPSGNDYLAEVCREWEATALGANKNVRVALIRIGVVLGKE 185
           VSATA+GYYGTSET +FDE+SPSGNDYLAEVCREWEATAL  NK+VR+ALIRIGVVLGK+
Sbjct: 166 VSATAVGYYGTSETQVFDEQSPSGNDYLAEVCREWEATALKVNKDVRLALIRIGVVLGKD 225

Query: 186 GGALAKMIPLFNLFAGGPLGSGRQWFSWIHLDDIVNLIYEALTNPSYNGVINGTAPNPVK 245
           GGALAKMIPLF +FAGGPLGSG+QWFSWIHLDDIVNLIYEAL+NPSY GVINGTAPNPV+
Sbjct: 226 GGALAKMIPLFMVFAGGPLGSGKQWFSWIHLDDIVNLIYEALSNPSYKGVINGTAPNPVR 285

Query: 246 LAELCERLGAAMGRPSWLPVPDFALKAVLGEGASVVLEGQRVVPTRAKELGFTFKYPTVK 305
            AE+CE LG  +GRPSWLPVPDFALK VLGEGASVVL+GQRV+P +AKELGFTFKY +VK
Sbjct: 286 FAEMCEHLGNVLGRPSWLPVPDFALKVVLGEGASVVLDGQRVLPVKAKELGFTFKYSSVK 345

Query: 306 EALKAILS 314
           +AL++I+S
Sbjct: 346 DALRSIIS 349

[Close]

BLAST of CmaCh19G006780 vs. TrEMBL
Match: A0A076MQV7_MANES (SulA OS=Manihot esculenta GN=SulA PE=2 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 5.1e-140
Identity = 250/307 (81.43%), Postives = 278/307 (90.55%), Query Frame = 1


Query: 6   NQFTVSITGATGFIGRRLVQRLHTDNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPGWK 65
           NQ TVSITGATGFIGRRLVQRLH DNH I VLTRSKSKAELIFPA++FP IV+AEEP WK
Sbjct: 47  NQMTVSITGATGFIGRRLVQRLHADNHYINVLTRSKSKAELIFPAKDFPRIVVAEEPKWK 106

Query: 66  DCIQGSDGVVNLAGLPISGTRYVHNWRHIKKEIKQSRIRVTSKVVSLINDAPDVARPTVL 125
           D I+GS+ VVNLAG+PIS TR+      IKKEIKQSRIRVTSKVV LIND+PD  RPTVL
Sbjct: 107 DSIRGSNAVVNLAGMPIS-TRWSSE---IKKEIKQSRIRVTSKVVDLINDSPDGVRPTVL 166

Query: 126 VSATAIGYYGTSETAIFDERSPSGNDYLAEVCREWEATALGANKNVRVALIRIGVVLGKE 185
           VSATA+GYYG+SET +FDERSPSGNDYLAEVCREWEA+AL  NK+VR+ALIRIGVVLGK+
Sbjct: 167 VSATAVGYYGSSETQVFDERSPSGNDYLAEVCREWEASALKVNKDVRLALIRIGVVLGKD 226

Query: 186 GGALAKMIPLFNLFAGGPLGSGRQWFSWIHLDDIVNLIYEALTNPSYNGVINGTAPNPVK 245
           GGALAKMIPLF +FAGGPLGSG+QWFSWIHLDDIVNLIYEAL+NP+Y GVINGTAPNPV+
Sbjct: 227 GGALAKMIPLFMMFAGGPLGSGQQWFSWIHLDDIVNLIYEALSNPAYRGVINGTAPNPVR 286

Query: 246 LAELCERLGAAMGRPSWLPVPDFALKAVLGEGASVVLEGQRVVPTRAKELGFTFKYPTVK 305
           LAE+C+RLG  +GRPSWLPVPDFALKAVLGEGASVVL+GQ+V+P RAKELGF FKYP V+
Sbjct: 287 LAEMCDRLGNVLGRPSWLPVPDFALKAVLGEGASVVLDGQKVLPKRAKELGFQFKYPHVQ 346

Query: 306 EALKAIL 313
           +ALK IL
Sbjct: 347 DALKTIL 349

[Close]

BLAST of CmaCh19G006780 vs. TrEMBL
Match: B9RG50_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1450710 PE=4 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 1.1e-139
Identity = 249/309 (80.58%), Postives = 276/309 (89.32%), Query Frame = 1


Query: 4   EKNQFTVSITGATGFIGRRLVQRLHTDNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPG 63
           ++NQ TVS+TGATGFIGRRLVQRLH DNHNI VLTRSKSKA+LIFP ++FP IVIAEEP 
Sbjct: 47  KENQMTVSVTGATGFIGRRLVQRLHADNHNIHVLTRSKSKAQLIFPGKDFPRIVIAEEPE 106

Query: 64  WKDCIQGSDGVVNLAGLPISGTRYVHNWRHIKKEIKQSRIRVTSKVVSLINDAPDVARPT 123
           WK+ IQGSD VVNLAG+PIS TR+      IKKEIKQSRIRVTSKVV LIND+P+  RPT
Sbjct: 107 WKNSIQGSDAVVNLAGMPIS-TRWSSE---IKKEIKQSRIRVTSKVVDLINDSPEGVRPT 166

Query: 124 VLVSATAIGYYGTSETAIFDERSPSGNDYLAEVCREWEATALGANKNVRVALIRIGVVLG 183
           VLVSATA+GYYG+SET +FDE SPSGNDYLA VCREWE TAL  NK+VR+ALIRIGVVLG
Sbjct: 167 VLVSATAVGYYGSSETRVFDESSPSGNDYLAGVCREWEGTALKVNKDVRLALIRIGVVLG 226

Query: 184 KEGGALAKMIPLFNLFAGGPLGSGRQWFSWIHLDDIVNLIYEALTNPSYNGVINGTAPNP 243
           K GGALAKMIPLF +FAGGPLGSGRQWFSWIHL+DIVNLIYEAL NPSY GVINGTAPNP
Sbjct: 227 KNGGALAKMIPLFMMFAGGPLGSGRQWFSWIHLEDIVNLIYEALINPSYKGVINGTAPNP 286

Query: 244 VKLAELCERLGAAMGRPSWLPVPDFALKAVLGEGASVVLEGQRVVPTRAKELGFTFKYPT 303
           V+LAE+CE+LG  +GRPSWLPVPDFALKAVLGEGASVVL+GQ+V+PT+AKELGF FKYP 
Sbjct: 287 VRLAEMCEQLGNVLGRPSWLPVPDFALKAVLGEGASVVLDGQKVLPTKAKELGFQFKYPY 346

Query: 304 VKEALKAIL 313
           VK+ALK IL
Sbjct: 347 VKDALKTIL 351

[Close]

BLAST of CmaCh19G006780 vs. TAIR10
Match: AT2G21280.1 (AT2G21280.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 489.6 bits (1259), Expect = 1.5e-138
Identity = 241/309 (77.99%), Postives = 273/309 (88.35%), Query Frame = 1


Query: 4   EKNQFTVSITGATGFIGRRLVQRLHTDNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPG 63
           +++Q TVS+TGATGFIGRRLVQRL  DNH IRVLTRSKSKAE IFPA++FPGIVIAEE  
Sbjct: 42  KESQMTVSVTGATGFIGRRLVQRLRADNHAIRVLTRSKSKAEQIFPAKDFPGIVIAEESE 101

Query: 64  WKDCIQGSDGVVNLAGLPISGTRYVHNWRHIKKEIKQSRIRVTSKVVSLINDAPDVARPT 123
           WK+C+QGS  VVNLAGLPIS TR+      IKKEIK SRIRVTSKVV LIN++P  ARPT
Sbjct: 102 WKNCVQGSTAVVNLAGLPIS-TRWSPE---IKKEIKGSRIRVTSKVVDLINNSPAEARPT 161

Query: 124 VLVSATAIGYYGTSETAIFDERSPSGNDYLAEVCREWEATALGANKNVRVALIRIGVVLG 183
           VLVSATA+GYYGTSET +FDE SPSG DYLAEVCREWE TAL ANK+VRVALIRIGVVLG
Sbjct: 162 VLVSATAVGYYGTSETGVFDENSPSGKDYLAEVCREWEGTALKANKDVRVALIRIGVVLG 221

Query: 184 KEGGALAKMIPLFNLFAGGPLGSGRQWFSWIHLDDIVNLIYEALTNPSYNGVINGTAPNP 243
           K+GGALA MIP F +FAGGPLGSG+QWFSWIH+DD+VNLIYEALTNPSY GVINGTAPNP
Sbjct: 222 KDGGALAMMIPFFQMFAGGPLGSGQQWFSWIHVDDLVNLIYEALTNPSYKGVINGTAPNP 281

Query: 244 VKLAELCERLGAAMGRPSWLPVPDFALKAVLGEGASVVLEGQRVVPTRAKELGFTFKYPT 303
           V+L E+C++LG+ + RPSWLPVPDFALKA+LGEGA+VVLEGQ+V+P RAKELGF FKY  
Sbjct: 282 VRLGEMCQQLGSVLSRPSWLPVPDFALKALLGEGATVVLEGQKVLPVRAKELGFEFKYKY 341

Query: 304 VKEALKAIL 313
           VK+AL+AI+
Sbjct: 342 VKDALRAIM 346

[Close]

BLAST of CmaCh19G006780 vs. NCBI nr
Match: gi|659068521|ref|XP_008444858.1| (PREDICTED: epimerase family protein SDR39U1-like isoform X1 [Cucumis melo])

HSP 1 Score: 559.3 bits (1440), Expect = 4.3e-156
Identity = 280/313 (89.46%), Postives = 293/313 (93.61%), Query Frame = 1


Query: 1   MLGEKNQFTVSITGATGFIGRRLVQRLHTDNHNIRVLTRSKSKAELIFPAREFPGIVIAE 60
           MLG+KNQ TVSITGATGFIGRRLVQRLH D HNIRVLTRSKSKAELIFPAREFPGI+IAE
Sbjct: 152 MLGKKNQLTVSITGATGFIGRRLVQRLHADKHNIRVLTRSKSKAELIFPAREFPGIMIAE 211

Query: 61  EPGWKDCIQGSDGVVNLAGLPISGTRYVHNWRHIKKEIKQSRIRVTSKVVSLINDAPDVA 120
           EPGWKDCIQGSDGVVNLAG+PIS TR+      IKKEIKQSRIRVTSKVVSLINDAPD A
Sbjct: 212 EPGWKDCIQGSDGVVNLAGMPIS-TRWSSE---IKKEIKQSRIRVTSKVVSLINDAPDAA 271

Query: 121 RPTVLVSATAIGYYGTSETAIFDERSPSGNDYLAEVCREWEATALGANKNVRVALIRIGV 180
           RPTVLVSATA+GYYGTSETA FDERSPSGNDYLAEVCREWEATALG NKNVRVALIRIGV
Sbjct: 272 RPTVLVSATAVGYYGTSETATFDERSPSGNDYLAEVCREWEATALGVNKNVRVALIRIGV 331

Query: 181 VLGKEGGALAKMIPLFNLFAGGPLGSGRQWFSWIHLDDIVNLIYEALTNPSYNGVINGTA 240
           VLGKEGGALAKMIPLF +FAGGPLGSG+QWFSWIHLDDIVNLIYEAL NPSY GVINGTA
Sbjct: 332 VLGKEGGALAKMIPLFMMFAGGPLGSGKQWFSWIHLDDIVNLIYEALINPSYQGVINGTA 391

Query: 241 PNPVKLAELCERLGAAMGRPSWLPVPDFALKAVLGEGASVVLEGQRVVPTRAKELGFTFK 300
           PNPV L ELC+ LGA MGRPSWLPVPDFALKAVLGEGASVVLEGQRVVPTRAKELGF++K
Sbjct: 392 PNPVTLGELCKGLGAEMGRPSWLPVPDFALKAVLGEGASVVLEGQRVVPTRAKELGFSYK 451

Query: 301 YPTVKEALKAILS 314
           YP+VK+ALK+ILS
Sbjct: 452 YPSVKDALKSILS 460

[Close]

BLAST of CmaCh19G006780 vs. NCBI nr
Match: gi|778722745|ref|XP_011658559.1| (PREDICTED: epimerase family protein SDR39U1 homolog, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 555.1 bits (1429), Expect = 8.0e-155
Identity = 277/313 (88.50%), Postives = 293/313 (93.61%), Query Frame = 1


Query: 1   MLGEKNQFTVSITGATGFIGRRLVQRLHTDNHNIRVLTRSKSKAELIFPAREFPGIVIAE 60
           MLG+KNQ TVSITGATGFIGRRLVQRLH D HNIRVLTRSKSKAELIFPAREFPGI+IAE
Sbjct: 152 MLGKKNQLTVSITGATGFIGRRLVQRLHADKHNIRVLTRSKSKAELIFPAREFPGIMIAE 211

Query: 61  EPGWKDCIQGSDGVVNLAGLPISGTRYVHNWRHIKKEIKQSRIRVTSKVVSLINDAPDVA 120
           EPGWK+CIQGSDGVVNLAG+PIS TR+      IKKEIKQSRIRVTSKVVSLINDAPD A
Sbjct: 212 EPGWKNCIQGSDGVVNLAGMPIS-TRWSSE---IKKEIKQSRIRVTSKVVSLINDAPDAA 271

Query: 121 RPTVLVSATAIGYYGTSETAIFDERSPSGNDYLAEVCREWEATALGANKNVRVALIRIGV 180
           RPTVLVSATA+GYYGTSETA FDERSPSGNDYLA+VCREWEATALG NKNVRVALIRIGV
Sbjct: 272 RPTVLVSATAVGYYGTSETATFDERSPSGNDYLAQVCREWEATALGVNKNVRVALIRIGV 331

Query: 181 VLGKEGGALAKMIPLFNLFAGGPLGSGRQWFSWIHLDDIVNLIYEALTNPSYNGVINGTA 240
           VLGKEGGALAKMIPLF +FAGGPLGSG+QWFSWIHLDDIVNLIYEAL NPSY GVINGTA
Sbjct: 332 VLGKEGGALAKMIPLFMMFAGGPLGSGKQWFSWIHLDDIVNLIYEALINPSYQGVINGTA 391

Query: 241 PNPVKLAELCERLGAAMGRPSWLPVPDFALKAVLGEGASVVLEGQRVVPTRAKELGFTFK 300
           PNPV L ELC+ LGA MGRPSWLPVPDFALKAVLGEGASVVLEGQ+VVPTRAKELGF++K
Sbjct: 392 PNPVTLGELCKGLGAEMGRPSWLPVPDFALKAVLGEGASVVLEGQKVVPTRAKELGFSYK 451

Query: 301 YPTVKEALKAILS 314
           YP+VK+ALK+ILS
Sbjct: 452 YPSVKDALKSILS 460

[Close]

BLAST of CmaCh19G006780 vs. NCBI nr
Match: gi|659068523|ref|XP_008444867.1| (PREDICTED: epimerase family protein SDR39U1-like isoform X2 [Cucumis melo])

HSP 1 Score: 552.7 bits (1423), Expect = 4.0e-154
Identity = 277/309 (89.64%), Postives = 289/309 (93.53%), Query Frame = 1


Query: 5   KNQFTVSITGATGFIGRRLVQRLHTDNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPGW 64
           KNQ TVSITGATGFIGRRLVQRLH D HNIRVLTRSKSKAELIFPAREFPGI+IAEEPGW
Sbjct: 44  KNQLTVSITGATGFIGRRLVQRLHADKHNIRVLTRSKSKAELIFPAREFPGIMIAEEPGW 103

Query: 65  KDCIQGSDGVVNLAGLPISGTRYVHNWRHIKKEIKQSRIRVTSKVVSLINDAPDVARPTV 124
           KDCIQGSDGVVNLAG+PIS TR+      IKKEIKQSRIRVTSKVVSLINDAPD ARPTV
Sbjct: 104 KDCIQGSDGVVNLAGMPIS-TRWSSE---IKKEIKQSRIRVTSKVVSLINDAPDAARPTV 163

Query: 125 LVSATAIGYYGTSETAIFDERSPSGNDYLAEVCREWEATALGANKNVRVALIRIGVVLGK 184
           LVSATA+GYYGTSETA FDERSPSGNDYLAEVCREWEATALG NKNVRVALIRIGVVLGK
Sbjct: 164 LVSATAVGYYGTSETATFDERSPSGNDYLAEVCREWEATALGVNKNVRVALIRIGVVLGK 223

Query: 185 EGGALAKMIPLFNLFAGGPLGSGRQWFSWIHLDDIVNLIYEALTNPSYNGVINGTAPNPV 244
           EGGALAKMIPLF +FAGGPLGSG+QWFSWIHLDDIVNLIYEAL NPSY GVINGTAPNPV
Sbjct: 224 EGGALAKMIPLFMMFAGGPLGSGKQWFSWIHLDDIVNLIYEALINPSYQGVINGTAPNPV 283

Query: 245 KLAELCERLGAAMGRPSWLPVPDFALKAVLGEGASVVLEGQRVVPTRAKELGFTFKYPTV 304
            L ELC+ LGA MGRPSWLPVPDFALKAVLGEGASVVLEGQRVVPTRAKELGF++KYP+V
Sbjct: 284 TLGELCKGLGAEMGRPSWLPVPDFALKAVLGEGASVVLEGQRVVPTRAKELGFSYKYPSV 343

Query: 305 KEALKAILS 314
           K+ALK+ILS
Sbjct: 344 KDALKSILS 348

[Close]

BLAST of CmaCh19G006780 vs. NCBI nr
Match: gi|449461621|ref|XP_004148540.1| (PREDICTED: epimerase family protein SDR39U1 homolog, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 548.5 bits (1412), Expect = 7.5e-153
Identity = 274/309 (88.67%), Postives = 289/309 (93.53%), Query Frame = 1


Query: 5   KNQFTVSITGATGFIGRRLVQRLHTDNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPGW 64
           KNQ TVSITGATGFIGRRLVQRLH D HNIRVLTRSKSKAELIFPAREFPGI+IAEEPGW
Sbjct: 44  KNQLTVSITGATGFIGRRLVQRLHADKHNIRVLTRSKSKAELIFPAREFPGIMIAEEPGW 103

Query: 65  KDCIQGSDGVVNLAGLPISGTRYVHNWRHIKKEIKQSRIRVTSKVVSLINDAPDVARPTV 124
           K+CIQGSDGVVNLAG+PIS TR+      IKKEIKQSRIRVTSKVVSLINDAPD ARPTV
Sbjct: 104 KNCIQGSDGVVNLAGMPIS-TRWSSE---IKKEIKQSRIRVTSKVVSLINDAPDAARPTV 163

Query: 125 LVSATAIGYYGTSETAIFDERSPSGNDYLAEVCREWEATALGANKNVRVALIRIGVVLGK 184
           LVSATA+GYYGTSETA FDERSPSGNDYLA+VCREWEATALG NKNVRVALIRIGVVLGK
Sbjct: 164 LVSATAVGYYGTSETATFDERSPSGNDYLAQVCREWEATALGVNKNVRVALIRIGVVLGK 223

Query: 185 EGGALAKMIPLFNLFAGGPLGSGRQWFSWIHLDDIVNLIYEALTNPSYNGVINGTAPNPV 244
           EGGALAKMIPLF +FAGGPLGSG+QWFSWIHLDDIVNLIYEAL NPSY GVINGTAPNPV
Sbjct: 224 EGGALAKMIPLFMMFAGGPLGSGKQWFSWIHLDDIVNLIYEALINPSYQGVINGTAPNPV 283

Query: 245 KLAELCERLGAAMGRPSWLPVPDFALKAVLGEGASVVLEGQRVVPTRAKELGFTFKYPTV 304
            L ELC+ LGA MGRPSWLPVPDFALKAVLGEGASVVLEGQ+VVPTRAKELGF++KYP+V
Sbjct: 284 TLGELCKGLGAEMGRPSWLPVPDFALKAVLGEGASVVLEGQKVVPTRAKELGFSYKYPSV 343

Query: 305 KEALKAILS 314
           K+ALK+ILS
Sbjct: 344 KDALKSILS 348

[Close]

BLAST of CmaCh19G006780 vs. NCBI nr
Match: gi|1009149570|ref|XP_015892547.1| (PREDICTED: epimerase family protein SDR39U1 homolog, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 509.6 bits (1311), Expect = 3.9e-141
Identity = 249/310 (80.32%), Postives = 277/310 (89.35%), Query Frame = 1


Query: 4   EKNQFTVSITGATGFIGRRLVQRLHTDNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPG 63
           +K+Q  +SITGATGF+GRRLVQRL TDNHN+RVLTRS+SKAELIFP ++FPGIVIAEEP 
Sbjct: 43  KKDQMIISITGATGFVGRRLVQRLSTDNHNVRVLTRSRSKAELIFPVKDFPGIVIAEEPE 102

Query: 64  WKDCIQGSDGVVNLAGLPISGTRYVHNWRHIKKEIKQSRIRVTSKVVSLINDAPDVARPT 123
           WK CIQGS GVVNLAG+PIS TR+      IKKEIKQSRIRVTSK+V LIND PD  RP 
Sbjct: 103 WKGCIQGSHGVVNLAGMPIS-TRWSSE---IKKEIKQSRIRVTSKIVGLINDTPDTVRPK 162

Query: 124 VLVSATAIGYYGTSETAIFDERSPSGNDYLAEVCREWEATALGANKNVRVALIRIGVVLG 183
           VLVSATA+GYYGTSET IFDE+SPSGNDYLAEVCREWEA AL  NK+VR+ALIRIGVVLG
Sbjct: 163 VLVSATAVGYYGTSETQIFDEQSPSGNDYLAEVCREWEAEALKVNKDVRLALIRIGVVLG 222

Query: 184 KEGGALAKMIPLFNLFAGGPLGSGRQWFSWIHLDDIVNLIYEALTNPSYNGVINGTAPNP 243
           K+GGALAKM+PLF +FAGGPLGSG QWFSWIHLDDIVNLIYEAL+NPSY GVINGTAPNP
Sbjct: 223 KDGGALAKMVPLFKVFAGGPLGSGNQWFSWIHLDDIVNLIYEALSNPSYKGVINGTAPNP 282

Query: 244 VKLAELCERLGAAMGRPSWLPVPDFALKAVLGEGASVVLEGQRVVPTRAKELGFTFKYPT 303
           V+LAE+CE LG  +GRPSWLPVPDFALKAVLGEGA+VVL+GQRV+P RAKELGF FKY  
Sbjct: 283 VRLAEMCEHLGNVLGRPSWLPVPDFALKAVLGEGATVVLDGQRVLPARAKELGFPFKYSY 342

Query: 304 VKEALKAILS 314
           +K+AL+AILS
Sbjct: 343 IKDALRAILS 348

The following BLAST results are available for this feature:

BLAST of CmaCh19G006780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GC1_ARATH	2.6e-137	77.99	Epimerase family protein SDR39U1 homolog, chloroplastic OS=Arabidopsis thaliana ...	[more]
Y1223_SYNY3	9.7e-76	49.68	Epimerase family protein slr1223 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)...	[more]
YFCH_ECOLI	4.2e-55	40.52	Epimerase family protein YfcH OS=Escherichia coli (strain K12) GN=yfcH PE=3 SV=1	[more]
D39U1_MOUSE	1.9e-47	35.18	Epimerase family protein SDR39U1 OS=Mus musculus GN=Sdr39u1 PE=1 SV=1	[more]
D39U1_BOVIN	8.9e-45	35.06	Epimerase family protein SDR39U1 OS=Bos taurus GN=SDR39U1 PE=2 SV=1	[more]

BLAST of CmaCh19G006780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2D2_CUCSA	5.2e-153	88.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G006290 PE=4 SV=1	[more]
B9HRF3_POPTR	7.8e-141	80.32	GIANT CHLOROPLAST 1 family protein OS=Populus trichocarpa GN=POPTR_0009s12770g P...	[more]
M5VPC5_PRUPE	1.0e-140	81.17	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007916mg PE=4 SV=1	[more]
A0A076MQV7_MANES	5.1e-140	81.43	SulA OS=Manihot esculenta GN=SulA PE=2 SV=1	[more]
B9RG50_RICCO	1.1e-139	80.58	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1450710 PE=4 SV=1	[more]

BLAST of CmaCh19G006780 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21280.1	1.5e-138	77.99	NAD(P)-binding Rossmann-fold superfamily protein	[more]

BLAST of CmaCh19G006780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659068521\|ref\|XP_008444858.1\|	4.3e-156	89.46	PREDICTED: epimerase family protein SDR39U1-like isoform X1 [Cucumis melo]	[more]
gi\|778722745\|ref\|XP_011658559.1\|	8.0e-155	88.50	PREDICTED: epimerase family protein SDR39U1 homolog, chloroplastic isoform X1 [C...	[more]
gi\|659068523\|ref\|XP_008444867.1\|	4.0e-154	89.64	PREDICTED: epimerase family protein SDR39U1-like isoform X2 [Cucumis melo]	[more]
gi\|449461621\|ref\|XP_004148540.1\|	7.5e-153	88.67	PREDICTED: epimerase family protein SDR39U1 homolog, chloroplastic isoform X2 [C...	[more]
gi\|1009149570\|ref\|XP_015892547.1\|	3.9e-141	80.32	PREDICTED: epimerase family protein SDR39U1 homolog, chloroplastic [Ziziphus juj...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001509	Epimerase_deHydtase
IPR010099	SDR39U1
IPR013549	DUF1731
IPR016040	NAD(P)-bd_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0050662	coenzyme binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0010020	chloroplast fission
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0009941	chloroplast envelope
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0050662	coenzyme binding
molecular_function	GO:0042803	protein homodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G006780.1	CmaCh19G006780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001509	NAD-dependent epimerase/dehydratase, N-terminal domain	PFAM	PF01370	Epimerase	coord: 11..231 score: 6.0
IPR010099	Epimerase family protein SDR39U1	PANTHER	PTHR11092	SUGAR NUCLEOTIDE EPIMERASE RELATED	coord: 2..313 score: 1.9E
IPR010099	Epimerase family protein SDR39U1	TIGRFAMs	TIGR01777	TIGR01777	coord: 10..308 score: 8.0E
IPR013549	Domain of unknown function DUF1731	PFAM	PF08338	DUF1731	coord: 265..311 score: 7.2
IPR016040	NAD(P)-binding domain	GENE3D	G3DSA:3.40.50.720		coord: 5..253 score: 1.2
IPR016040	NAD(P)-binding domain	unknown	SSF51735	NAD(P)-binding Rossmann-fold domains	coord: 8..310 score: 7.93
None	No IPR available	PANTHER	PTHR11092:SF1	SUBFAMILY NOT NAMED	coord: 2..313 score: 1.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh19G006780	Bhi05G001540	Wax gourd	cmawgoB0647

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G006780	Cucumber (Gy14) v2	cgybcmaB944
CmaCh19G006780	Silver-seed gourd	carcmaB0238
CmaCh19G006780	Silver-seed gourd	carcmaB0440
CmaCh19G006780	Cucumber (Chinese Long) v3	cmacucB0638
CmaCh19G006780	Watermelon (97103) v2	cmawmbB531
CmaCh19G006780	Wax gourd	cmawgoB0641
CmaCh19G006780	Cucurbita maxima (Rimu)	cmacmaB152
CmaCh19G006780	Cucurbita maxima (Rimu)	cmacmaB452
CmaCh19G006780	Cucumber (Gy14) v1	cgycmaB1038
CmaCh19G006780	Cucurbita moschata (Rifu)	cmacmoB495
CmaCh19G006780	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G006780	Melon (DHL92) v3.5.1	cmameB462
CmaCh19G006780	Watermelon (Charleston Gray)	cmawcgB460
CmaCh19G006780	Watermelon (97103) v1	cmawmB503
CmaCh19G006780	Cucurbita pepo (Zucchini)	cmacpeB522
CmaCh19G006780	Cucurbita pepo (Zucchini)	cmacpeB526
CmaCh19G006780	Cucurbita pepo (Zucchini)	cmacpeB540
CmaCh19G006780	Bottle gourd (USVL1VR-Ls)	cmalsiB472