CmaCh19G006740 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G006740
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTranscription factor radialis-like protein
LocationCma_Chr19 : 7033206 .. 7035209 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAATGTCTTCCCATGGATCAGCTAGTACATGGACTGTAAAGCAAAACAAGGTCTTTGAGCAGGCATTGGCAGTTTATGATCAAGACACACCTGACCGATGGCTGAATGTTGCGAAGGCTGTTCCGGGAAAAACTGCCGAGGAGGTCGAAAGGCATTATGCACTTCTTGTCGACGATGTTAAGTTCATTGAGTCGGGTCAAGTTCCCTTTCCCTATCAAACCTCTGGAGGAGGTACCCAAGGTAAAATAAGTTTTTGGATTGATCGGTGATTTTACCTGATATTCGAATATGAAATTTTATGTATCATTTTTTCGAGGTGATCCAAACAACCCGAATACAATTTCCAACTCAAACTTCTGGGTTGGGTTGAGTTGTCGGATTGTTCTTTTATTATAAACTGATACATGTAATATTAATAACTAAAATCTCAAAGTTTAAATATCAAATATTTAGAAGTCAGCTCACATCACTAACATCAGTTACAAATATTAAATGTTCCAAACCTTTTTTGTGAGATCCCAACATTGGATGGGTAGGAAAACAAATCATTATTTATAAGAGTATGGAAATCACTCCCTAGCCGATGTTTTGAAAACCTTGAGGGGAAGCCCGAAAAAGAAAGTCAAAGGAGAACAATATGTGTTAGCGGTAGATTTACGGTGGTCTAGGATGTTACACTTCTAAATGCAGGGTGTGGTTGGGTTGGATTGTAACCTTTTTATTGAGTTGGTCGAGTTGATGTAGACAAAAAAAAAAAAAAAAATCAACCTACAAACCAAACCAAATTTTTCGGTTTTTTAATTATTCATGTTTGATTTTAACCCAATGTTTTTTTTTTCTCAGGATGAGAAACATGAAGCTCCACCATTGTGATGGTGAAGTGAGGGAGAATAAAAGAAGGAAAGAAGAATGAACCTTTTTGTCTAATATGATACCTAATATTATTGATTGGCGTCAAGCTCTATCTTAATTGTTATCAACCATCGATTTTGGGAGGGCAAGATCAAAAGGATTATCCCTTCCTTTTTCGTTAGTATAATGAATATTTATGTCCTTTTATAATGAAATTTATAAGCAATATGGTGTACCTTTTTACCTTCTCAACAATGAAAGTGCTAATTTATGTTTCTTCGTACGACGCAAAGGAAGAGTACGGGTATATAAATGAAAAAAAACCACATTTAAATGAGTGATTCTATACCAACAAGCACTGAGACTCAGACACGACCTAAACTCCTATAAGAGGCAGTAGTGGAGAATTTTCTGCAATGGACGAAACTCTAATGGAGCAATATCGCGTGGAGGTAGAAGATTTACGAGTCGTGAACTTTTTTCAGAGAAGAAGCAATAACAATATCTGGAAAATAAAACTCGGCTAACTCTATGTCAAGAGCCGCAATAATATAGAGACAAATGCCATTAAACAAATAATAGACGTTCAACCGTTTTCGTGGATGTGCACGAAGAAGATTGAAACTTGCTCTAAAGCCAAATAATTTTACAAAACTAAGGGAATATTGGAATTCATAGCAAATTTGTAAAAATAAAATAAATTATAATTAAAAAAAAACATTTTTTCCCCTAAATTTTCTTAGATTTTAAAAATCTAAAAGGTAACAAAACAAAAATCAAGATTATTTGGTTTTTTTATTTTTTATTTTCTTTTTAATTAAGCCTACGAACATCACTTTCACCTATTAATTTATGTGTTTTAATGTCAACATTTTATTTGTTTTTGGTAAGGGGAGGATGTGCTAGTCCATAGTCAGGCTGATGGTACGAATCCGAGCTCACCTAGTGGGTTCATATGCACACATGTGAGCTAGAGAATACTATTCATCAAATCCTAATAAAAAAAAAGTCTTACGTGTCAAGAATTATGTTATATGTGGTTACATTTTTCGATCCCAACAATACCATCACTTACTGAATATTTTTAAAATATTCCTTCAATGTCTATCATTTATTTAGATGAACACAAAGGTCACACTAGATAG

mRNA sequence

ATGGCTTCAATGTCTTCCCATGGATCAGCTAGTACATGGACTGTAAAGCAAAACAAGGTCTTTGAGCAGGCATTGGCAGTTTATGATCAAGACACACCTGACCGATGGCTGAATGTTGCGAAGGCTGTTCCGGGAAAAACTGCCGAGGAGGTCGAAAGGCATTATGCACTTCTTGTCGACGATGTTAAGTTCATTGAGTCGGGTCAAGTTCCCTTTCCCTATCAAACCTCTGGAGGAGGTACCCAAGATGAACACAAAGGTCACACTAGATAG

Coding sequence (CDS)

ATGGCTTCAATGTCTTCCCATGGATCAGCTAGTACATGGACTGTAAAGCAAAACAAGGTCTTTGAGCAGGCATTGGCAGTTTATGATCAAGACACACCTGACCGATGGCTGAATGTTGCGAAGGCTGTTCCGGGAAAAACTGCCGAGGAGGTCGAAAGGCATTATGCACTTCTTGTCGACGATGTTAAGTTCATTGAGTCGGGTCAAGTTCCCTTTCCCTATCAAACCTCTGGAGGAGGTACCCAAGATGAACACAAAGGTCACACTAGATAG

Protein sequence

MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVDDVKFIESGQVPFPYQTSGGGTQDEHKGHTR
Homology
[Close]
BLAST of CmaCh19G006740 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-24
Identity = 50/83 (60.24%), Postives = 68/83 (81.93%), Query Frame = 1 

Query: 5  SSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVDDVKF 64
          S+ GS   W+ K+NK FE+ALAVYD+DTPDRW NVA+AV G+T EEV++HY +LV+D+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGQVPFP-YQTSGGGTQDEHK 87
          IESG+VPFP Y+T+GG  + + K
Sbjct: 63 IESGKVPFPNYRTTGGNMKTDEK 85

[Close]
BLAST of CmaCh19G006740 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.2e-24
Identity = 57/81 (70.37%), Postives = 63/81 (77.78%), Query Frame = 1 

Query: 2  ASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVDD 61
          +SMSS  S S WT KQNK FEQALA YDQDTP+RW NVAK V GKT EEV+RHY LLV D
Sbjct: 4  SSMSSQSSGS-WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQD 63

Query: 62 VKFIESGQVPFP-YQTSGGGT 82
          +  IE+G VPFP Y+TSGG T
Sbjct: 64 INSIENGHVPFPNYRTSGGCT 83

[Close]
BLAST of CmaCh19G006740 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.7e-23
Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = 1 

Query: 3  SMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVDDV 62
          SMSS+GS S WTVKQNK FE+ALAVYDQDTPDRW NVA+AV GKT EE +R Y LLV D+
Sbjct: 5  SMSSYGSGS-WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KFIESGQVPFP-YQTSGGGT-----QDEHK 87
          + IE+G VPFP Y+T+ G +     +DE K
Sbjct: 65 ESIENGHVPFPDYKTTTGNSNRGRLRDEEK 93

[Close]
BLAST of CmaCh19G006740 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 9.7e-21
Identity = 52/79 (65.82%), Postives = 59/79 (74.68%), Query Frame = 1 

Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MAS S   SAS WT K+NK+FE+ALA YDQDTPDRW NVA+AV GK+AEEV RHY LL+ 
Sbjct: 1  MASNSMSSSAS-WTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIR 60

Query: 61 DVKFIESGQVPFPYQTSGG 80
          DV  IESG+ P P   S G
Sbjct: 61 DVNDIESGRYPHPNYRSNG 78

[Close]
BLAST of CmaCh19G006740 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.8e-20
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 1 

Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MAS +S  S S WT  QNK+FE+ALAVYD+DTPDRW NVAKAV GKT EEV+RHY +LV+
Sbjct: 1  MAS-NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 61 DVKFIESGQVPFP-YQTSGGGTQDEHKGHTR 91
          D+  IE+G+VP P Y+T    ++  +   TR
Sbjct: 61 DLINIETGRVPLPNYKTFESNSRSINDFDTR 90

[Close]
BLAST of CmaCh19G006740 vs. TrEMBL
Match: A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.3e-32
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 1 

Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MASMSSHGS  TWTV QNK FE+ALAVYDQDTPDRWLNVAKAV GKTAEEV+RHYALLV+
Sbjct: 1  MASMSSHGSG-TWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60

Query: 61 DVKFIESGQVPFPYQTSGGGTQ 83
          DVKFIESGQVPFPY+TSGGG Q
Sbjct: 61 DVKFIESGQVPFPYRTSGGGNQ 81

[Close]
BLAST of CmaCh19G006740 vs. TrEMBL
Match: A0A0D2W2J5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G036700 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.7e-25
Identity = 60/77 (77.92%), Postives = 68/77 (88.31%), Query Frame = 1 

Query: 2  ASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVDD 61
          +SMSS GS S WT KQNK FE+ALAVYD+DTPDRW NVAKAV GKTAEEV+RHY LLV D
Sbjct: 4  SSMSSRGSGS-WTAKQNKDFERALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLVAD 63

Query: 62 VKFIESGQVPFPYQTSG 79
          VK+IESGQVPFPY+++G
Sbjct: 64 VKYIESGQVPFPYRSNG 79

[Close]
BLAST of CmaCh19G006740 vs. TrEMBL
Match: A0A161ZSS6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_022977 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.5e-25
Identity = 61/83 (73.49%), Postives = 70/83 (84.34%), Query Frame = 1 

Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MASMSSHGS   WTVKQNK FE+ALAVYD+DTPDRW NVAKAV GKTAEEV+RHY +LV 
Sbjct: 1  MASMSSHGS---WTVKQNKAFEKALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYEILVA 60

Query: 61 DVKFIESGQVPFP-YQTSGGGTQ 83
          D++ IE+G VPFP Y+T+GG  Q
Sbjct: 61 DIRRIENGNVPFPNYRTTGGNMQ 80

[Close]
BLAST of CmaCh19G006740 vs. TrEMBL
Match: A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.9e-25
Identity = 56/77 (72.73%), Postives = 68/77 (88.31%), Query Frame = 1 

Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MAS+S+HGS   WT KQNK FE+ALA+YD+DTPDRWLNVAKA+ GKT EEV+RHY LL++
Sbjct: 1  MASLSAHGSG-VWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKFIESGQVPFPYQTS 78
          DVK IESG+VPFPY++S
Sbjct: 61 DVKHIESGKVPFPYRSS 76

[Close]
BLAST of CmaCh19G006740 vs. TrEMBL
Match: W9QGR5_9ROSA (DnaJ homolog subfamily C member 2 OS=Morus notabilis GN=L484_018551 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.8e-25
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 1 

Query: 9  SASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVDDVKFIESG 68
          S STWT KQNK FE+ALAVYD+DTPDRW NVAKAV GKTAEEV+RHY LL++DVK IESG
Sbjct: 5  SMSTWTAKQNKAFEKALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLLEDVKHIESG 64

Query: 69 QVPFP-YQTSGGGTQ 83
          QVPFP Y+T+GG  Q
Sbjct: 65 QVPFPYYRTTGGSNQ 79

[Close]
BLAST of CmaCh19G006740 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 112.1 bits (279), Expect = 1.8e-25
Identity = 57/81 (70.37%), Postives = 63/81 (77.78%), Query Frame = 1 

Query: 2  ASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVDD 61
          +SMSS  S S WT KQNK FEQALA YDQDTP+RW NVAK V GKT EEV+RHY LLV D
Sbjct: 4  SSMSSQSSGS-WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQD 63

Query: 62 VKFIESGQVPFP-YQTSGGGT 82
          +  IE+G VPFP Y+TSGG T
Sbjct: 64 INSIENGHVPFPNYRTSGGCT 83

[Close]
BLAST of CmaCh19G006740 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 108.2 bits (269), Expect = 2.6e-24
Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = 1 

Query: 3  SMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVDDV 62
          SMSS+GS S WTVKQNK FE+ALAVYDQDTPDRW NVA+AV GKT EE +R Y LLV D+
Sbjct: 5  SMSSYGSGS-WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KFIESGQVPFP-YQTSGGGT-----QDEHK 87
          + IE+G VPFP Y+T+ G +     +DE K
Sbjct: 65 ESIENGHVPFPDYKTTTGNSNRGRLRDEEK 93

[Close]
BLAST of CmaCh19G006740 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 99.0 bits (245), Expect = 1.6e-21
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 1 

Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MAS +S  S S WT  QNK+FE+ALAVYD+DTPDRW NVAKAV GKT EEV+RHY +LV+
Sbjct: 1  MAS-NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 61 DVKFIESGQVPFP-YQTSGGGTQDEHKGHTR 91
          D+  IE+G+VP P Y+T    ++  +   TR
Sbjct: 61 DLINIETGRVPLPNYKTFESNSRSINDFDTR 90

[Close]
BLAST of CmaCh19G006740 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 98.2 bits (243), Expect = 2.7e-21
Identity = 52/83 (62.65%), Postives = 65/83 (78.31%), Query Frame = 1 

Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MAS SS  S+S+WT KQNK+FE+ALAVYD+DTPDRW NVAKAV  K+AEEV+RHY +LV+
Sbjct: 1  MAS-SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVE 60

Query: 61 DVKFIESGQVPFP-YQTSGGGTQ 83
          D+  IE   VP P Y+T   G++
Sbjct: 61 DLMNIEQDLVPLPKYKTVDVGSK 82

[Close]
BLAST of CmaCh19G006740 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-17
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 5  SSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVDDVKF 64
          SS  S S+WT +++K FE ALA +D+DTPDRW  +A+AV GK+ EEV+RHY LL+ DV  
Sbjct: 3  SSSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVND 62

Query: 65 IESGQVPFP 74
          IESG+ P P
Sbjct: 63 IESGRYPQP 71

[Close]
BLAST of CmaCh19G006740 vs. NCBI nr
Match: gi|778725458|ref|XP_004151125.2| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-32
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 1 

Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MASMSSHGS  TWTV QNK FE+ALAVYDQDTPDRWLNVAKAV GKTAEEV+RHYALLV+
Sbjct: 1  MASMSSHGSG-TWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60

Query: 61 DVKFIESGQVPFPYQTSGGGTQ 83
          DVKFIESGQVPFPY+TSGGG Q
Sbjct: 61 DVKFIESGQVPFPYRTSGGGNQ 81

[Close]
BLAST of CmaCh19G006740 vs. NCBI nr
Match: gi|659092346|ref|XP_008447024.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 2.5e-32
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 1 

Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MASMSSHGS  TWTVKQNK FE+ALAVYDQDTPDRWLNVAKAV GKTAEEV+RHYALLV+
Sbjct: 1  MASMSSHGSG-TWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60

Query: 61 DVKFIESGQVPFPYQTSGGGTQ 83
          DVKFIESGQVPFPY+TSG G Q
Sbjct: 61 DVKFIESGQVPFPYRTSGDGNQ 81

[Close]
BLAST of CmaCh19G006740 vs. NCBI nr
Match: gi|659092351|ref|XP_008447025.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 7.7e-26
Identity = 59/79 (74.68%), Postives = 69/79 (87.34%), Query Frame = 1 

Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MASMS+HGS   WT KQNK FE+ALA+YD+DTPDRWLNVAKA+ GKT EEV+RHY LL++
Sbjct: 1  MASMSAHGSG-VWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKFIESGQVPFPYQTSGG 80
          DVK IESG+VPFPY+TS G
Sbjct: 61 DVKHIESGKVPFPYRTSRG 78

[Close]
BLAST of CmaCh19G006740 vs. NCBI nr
Match: gi|657973333|ref|XP_008378460.1| (PREDICTED: transcription factor RADIALIS-like [Malus domestica])

HSP 1 Score: 124.4 bits (311), Expect = 1.0e-25
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 1 

Query: 2  ASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVDD 61
          +SMSS GS S+WT KQNK FE+ALAVYD+DT DRW NVAKAV GKT EEV+RHY +LV+D
Sbjct: 4  SSMSSRGSGSSWTAKQNKAFEKALAVYDKDTADRWYNVAKAVGGKTPEEVKRHYEVLVED 63

Query: 62 VKFIESGQVPFP-YQTSGGGTQDEH 86
          VK IESGQVPFP Y+T+GG +   H
Sbjct: 64 VKHIESGQVPFPDYRTTGGNSHGHH 88

[Close]
BLAST of CmaCh19G006740 vs. NCBI nr
Match: gi|823257091|ref|XP_012461179.1| (PREDICTED: protein RADIALIS-like 1 [Gossypium raimondii])

HSP 1 Score: 122.5 bits (306), Expect = 3.8e-25
Identity = 60/77 (77.92%), Postives = 68/77 (88.31%), Query Frame = 1 

Query: 2  ASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVDD 61
          +SMSS GS S WT KQNK FE+ALAVYD+DTPDRW NVAKAV GKTAEEV+RHY LLV D
Sbjct: 4  SSMSSRGSGS-WTAKQNKDFERALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLVAD 63

Query: 62 VKFIESGQVPFPYQTSG 79
          VK+IESGQVPFPY+++G
Sbjct: 64 VKYIESGQVPFPYRSNG 79

The following BLAST results are available for this feature:
BLAST of CmaCh19G006740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RAD_ANTMA1.1e-2460.24Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1[more]
RADL1_ARATH3.2e-2470.37Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1[more]
RADL2_ARATH4.7e-2364.44Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1[more]
RADL3_ARATH9.7e-2165.82Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1[more]
RADL6_ARATH2.8e-2058.24Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1[more]
BLAST of CmaCh19G006740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K348_CUCSA1.3e-3287.80Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1[more]
A0A0D2W2J5_GOSRA2.7e-2577.92Uncharacterized protein OS=Gossypium raimondii GN=B456_013G036700 PE=4 SV=1[more]
A0A161ZSS6_DAUCA3.5e-2573.49Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_022977 PE=4 SV=1[more]
A0A0A0K344_CUCSA5.9e-2572.73Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1[more]
W9QGR5_9ROSA7.8e-2577.33DnaJ homolog subfamily C member 2 OS=Morus notabilis GN=L484_018551 PE=4 SV=1[more]
BLAST of CmaCh19G006740 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G39250.11.8e-2570.37 RAD-like 1[more]
AT2G21650.12.6e-2464.44 Homeodomain-like superfamily protein[more]
AT1G75250.11.6e-2158.24 RAD-like 6[more]
AT1G19510.12.7e-2162.65 RAD-like 5[more]
AT2G18328.11.1e-1757.97 RAD-like 4[more]
BLAST of CmaCh19G006740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778725458|ref|XP_004151125.2|1.9e-3287.80PREDICTED: protein RADIALIS-like 1 [Cucumis sativus][more]
gi|659092346|ref|XP_008447024.1|2.5e-3287.80PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
gi|659092351|ref|XP_008447025.1|7.7e-2674.68PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
gi|657973333|ref|XP_008378460.1|1.0e-2570.59PREDICTED: transcription factor RADIALIS-like [Malus domestica][more]
gi|823257091|ref|XP_012461179.1|3.8e-2577.92PREDICTED: protein RADIALIS-like 1 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048262 determination of dorsal/ventral asymmetry
biological_process GO:0009908 flower development
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G006740.1CmaCh19G006740.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 9..61
score: 7.
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 11..67
score: 9.79
NoneNo IPR availablePANTHERPTHR24078DNAJ HOMOLOG SUBFAMILY C MEMBERcoord: 13..72
score: 1.5
NoneNo IPR availablePANTHERPTHR24078:SF177PROTEIN DNJ-23-RELATEDcoord: 13..72
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh19G006740ClCG02G004900Watermelon (Charleston Gray)cmawcgB460
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G006740Cucumber (Gy14) v1cgycmaB1038
CmaCh19G006740Cucurbita moschata (Rifu)cmacmoB495
CmaCh19G006740Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G006740Melon (DHL92) v3.5.1cmameB462
CmaCh19G006740Watermelon (97103) v1cmawmB503
CmaCh19G006740Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G006740Cucurbita pepo (Zucchini)cmacpeB526
CmaCh19G006740Cucurbita pepo (Zucchini)cmacpeB540
CmaCh19G006740Bottle gourd (USVL1VR-Ls)cmalsiB472
CmaCh19G006740Cucumber (Gy14) v2cgybcmaB944
CmaCh19G006740Silver-seed gourdcarcmaB0238
CmaCh19G006740Silver-seed gourdcarcmaB0440
CmaCh19G006740Cucumber (Chinese Long) v3cmacucB0638
CmaCh19G006740Watermelon (97103) v2cmawmbB531
CmaCh19G006740Wax gourdcmawgoB0641
CmaCh19G006740Cucurbita maxima (Rimu)cmacmaB152
CmaCh19G006740Cucurbita maxima (Rimu)cmacmaB452