CmaCh19G006720 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G006720
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTranscription factor radialis-like protein
LocationCma_Chr19 : 7022037 .. 7022276 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAATGTCCGCTCATGGGTCGGGTGTATGGACTGCAAAGCAAAACAAGGCGTTTGAAGAGGCTTTGGCAATGTATGATCAAGACAGACCTGATCGATGGCTGAATGTTGCTAAGGCCATTGGTGGAAAAACTGAAGAGGAAGTGAAAAGGCATTACCAAGTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGCAAGGTTCCTTTTCCTTATCGAAGCTCAAGAGGAAGTTAA

mRNA sequence

ATGGCTTCAATGTCCGCTCATGGGTCGGGTGTATGGACTGCAAAGCAAAACAAGGCGTTTGAAGAGGCTTTGGCAATGTATGATCAAGACAGACCTGATCGATGGCTGAATGTTGCTAAGGCCATTGGTGGAAAAACTGAAGAGGAAGTGAAAAGGCATTACCAAGTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGCAAGGTTCCTTTTCCTTATCGAAGCTCAAGAGGAAGTTAA

Coding sequence (CDS)

ATGGCTTCAATGTCCGCTCATGGGTCGGGTGTATGGACTGCAAAGCAAAACAAGGCGTTTGAAGAGGCTTTGGCAATGTATGATCAAGACAGACCTGATCGATGGCTGAATGTTGCTAAGGCCATTGGTGGAAAAACTGAAGAGGAAGTGAAAAGGCATTACCAAGTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGCAAGGTTCCTTTTCCTTATCGAAGCTCAAGAGGAAGTTAA

Protein sequence

MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS
Homology
[Close]
BLAST of CmaCh19G006720 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.4e-25
Identity = 54/78 (69.23%), Postives = 65/78 (83.33%), Query Frame = 1 

Query: 2  ASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDV 61
          +SMS+  SG WTAKQNKAFE+ALA YDQD P+RW NVAK +GGKT EEVKRHY++LV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGKVPFP-YRSSRG 79
            IE+G VPFP YR+S G
Sbjct: 64 NSIENGHVPFPNYRTSGG 81

[Close]
BLAST of CmaCh19G006720 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.3e-24
Identity = 51/78 (65.38%), Postives = 64/78 (82.05%), Query Frame = 1 

Query: 3  SMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVK 62
          SMS++GSG WT KQNKAFE ALA+YDQD PDRW NVA+A+GGKT EE KR Y +LV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGKVPFP-YRSSRGS 80
           IE+G VPFP Y+++ G+
Sbjct: 65 SIENGHVPFPDYKTTTGN 82

[Close]
BLAST of CmaCh19G006720 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-23
Identity = 51/77 (66.23%), Postives = 66/77 (85.71%), Query Frame = 1 

Query: 5  SAHGSG-VWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKH 64
          S  GSG  W+AK+NKAFE ALA+YD+D PDRW NVA+A+ G+T EEVK+HY++LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGKVPFP-YRSSRGS 80
          IESGKVPFP YR++ G+
Sbjct: 63 IESGKVPFPNYRTTGGN 79

[Close]
BLAST of CmaCh19G006720 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.0e-21
Identity = 47/79 (59.49%), Postives = 57/79 (72.15%), Query Frame = 1 

Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60
          MAS S   S  WT K+NK FE ALA YDQD PDRW NVA+A+GGK+ EEV+RHY++L+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKHIESGKVPFPYRSSRGS 80
          V  IESG+ P P   S G+
Sbjct: 61 VNDIESGRYPHPNYRSNGN 79

[Close]
BLAST of CmaCh19G006720 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-20
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1 

Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60
          MAS S      WT  QNK FE ALA+YD+D PDRW NVAKA+GGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGKVPFP 73
          + +IE+G+VP P
Sbjct: 61 LINIETGRVPLP 72

[Close]
BLAST of CmaCh19G006720 vs. TrEMBL
Match: A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-34
Identity = 72/79 (91.14%), Postives = 77/79 (97.47%), Query Frame = 1 

Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60
          MAS+SAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+ED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRGS 80
          VKHIESGKVPFPYRSSR +
Sbjct: 61 VKHIESGKVPFPYRSSRSN 79

[Close]
BLAST of CmaCh19G006720 vs. TrEMBL
Match: A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.7e-29
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 1 

Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60
          MASMS+HGSG WT  QNKAFE+ALA+YDQD PDRWLNVAKA+GGKT EEVKRHY +LVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKHIESGKVPFPYRSSRG 79
          VK IESG+VPFPYR+S G
Sbjct: 61 VKFIESGQVPFPYRTSGG 78

[Close]
BLAST of CmaCh19G006720 vs. TrEMBL
Match: A0A0A0K3K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 5.9e-29
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 1 

Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60
          MASMSAHGS  WTA +NKAFE+ALA+YD+D P+RWLNVAKAIGGKTEEEVKRHYQ+L+ED
Sbjct: 1  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRGS 80
          V HIESG++PFPYR S  S
Sbjct: 61 VNHIESGQIPFPYRKSTRS 79

[Close]
BLAST of CmaCh19G006720 vs. TrEMBL
Match: A0A061E040_THECC (Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_006883 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.1e-26
Identity = 59/79 (74.68%), Postives = 70/79 (88.61%), Query Frame = 1 

Query: 2  ASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDV 61
          +SMS+ GSG WTAKQNK FE ALA+YD+D PDRW NVAKA+GGKT EEVKRHY++LV+DV
Sbjct: 4  SSMSSRGSGSWTAKQNKDFERALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLVQDV 63

Query: 62 KHIESGKVPFP-YRSSRGS 80
          KHIESG+VPFP YR+S G+
Sbjct: 64 KHIESGQVPFPNYRTSAGN 82

[Close]
BLAST of CmaCh19G006720 vs. TrEMBL
Match: A0A0D2W2J5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G036700 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.7e-26
Identity = 57/75 (76.00%), Postives = 67/75 (89.33%), Query Frame = 1 

Query: 2  ASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDV 61
          +SMS+ GSG WTAKQNK FE ALA+YD+D PDRW NVAKA+GGKT EEVKRHY++LV DV
Sbjct: 4  SSMSSRGSGSWTAKQNKDFERALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLVADV 63

Query: 62 KHIESGKVPFPYRSS 77
          K+IESG+VPFPYRS+
Sbjct: 64 KYIESGQVPFPYRSN 78

[Close]
BLAST of CmaCh19G006720 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 115.2 bits (287), Expect = 1.9e-26
Identity = 54/78 (69.23%), Postives = 65/78 (83.33%), Query Frame = 1 

Query: 2  ASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDV 61
          +SMS+  SG WTAKQNKAFE+ALA YDQD P+RW NVAK +GGKT EEVKRHY++LV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGKVPFP-YRSSRG 79
            IE+G VPFP YR+S G
Sbjct: 64 NSIENGHVPFPNYRTSGG 81

[Close]
BLAST of CmaCh19G006720 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 110.9 bits (276), Expect = 3.6e-25
Identity = 51/78 (65.38%), Postives = 64/78 (82.05%), Query Frame = 1 

Query: 3  SMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVK 62
          SMS++GSG WT KQNKAFE ALA+YDQD PDRW NVA+A+GGKT EE KR Y +LV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGKVPFP-YRSSRGS 80
           IE+G VPFP Y+++ G+
Sbjct: 65 SIENGHVPFPDYKTTTGN 82

[Close]
BLAST of CmaCh19G006720 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 100.1 bits (248), Expect = 6.3e-22
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1 

Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60
          MAS S      WT  QNK FE ALA+YD+D PDRW NVAKA+GGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGKVPFP 73
          + +IE+G+VP P
Sbjct: 61 LINIETGRVPLP 72

[Close]
BLAST of CmaCh19G006720 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 99.0 bits (245), Expect = 1.4e-21
Identity = 46/72 (63.89%), Postives = 54/72 (75.00%), Query Frame = 1 

Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60
          MAS S   S  WT+KQNK FE ALA+YD+D PDRW NVAKA+G K+ EEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGKVPFP 73
          + +IE   VP P
Sbjct: 61 LMNIEQDLVPLP 72

[Close]
BLAST of CmaCh19G006720 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 87.4 bits (215), Expect = 4.2e-18
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 1 

Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60
          MAS S   S  WTA+++K FE ALA +D+D PDRW  +A+A+GGK+ EEVKRHY++L+ D
Sbjct: 1  MASSSMSTSS-WTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRD 60

Query: 61 VKHIESGKVPFP-YRSS 77
          V  IESG+ P P YR++
Sbjct: 61 VNDIESGRYPQPRYRNT 76

[Close]
BLAST of CmaCh19G006720 vs. NCBI nr
Match: gi|659092351|ref|XP_008447025.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 154.1 bits (388), Expect = 1.0e-34
Identity = 72/79 (91.14%), Postives = 78/79 (98.73%), Query Frame = 1 

Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60
          MASMSAHGSGVWTAKQNKAFE+ALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRGS 80
          VKHIESGKVPFPYR+SRG+
Sbjct: 61 VKHIESGKVPFPYRTSRGN 79

[Close]
BLAST of CmaCh19G006720 vs. NCBI nr
Match: gi|449466805|ref|XP_004151116.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 1.8e-34
Identity = 72/79 (91.14%), Postives = 77/79 (97.47%), Query Frame = 1 

Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60
          MAS+SAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+ED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRGS 80
          VKHIESGKVPFPYRSSR +
Sbjct: 61 VKHIESGKVPFPYRSSRSN 79

[Close]
BLAST of CmaCh19G006720 vs. NCBI nr
Match: gi|659092346|ref|XP_008447024.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 136.3 bits (342), Expect = 2.2e-29
Identity = 63/76 (82.89%), Postives = 70/76 (92.11%), Query Frame = 1 

Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60
          MASMS+HGSG WT KQNKAFE+ALA+YDQD PDRWLNVAKA+GGKT EEVKRHY +LVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKHIESGKVPFPYRSS 77
          VK IESG+VPFPYR+S
Sbjct: 61 VKFIESGQVPFPYRTS 76

[Close]
BLAST of CmaCh19G006720 vs. NCBI nr
Match: gi|778725458|ref|XP_004151125.2| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 3.8e-29
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 1 

Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60
          MASMS+HGSG WT  QNKAFE+ALA+YDQD PDRWLNVAKA+GGKT EEVKRHY +LVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKHIESGKVPFPYRSSRG 79
          VK IESG+VPFPYR+S G
Sbjct: 61 VKFIESGQVPFPYRTSGG 78

[Close]
BLAST of CmaCh19G006720 vs. NCBI nr
Match: gi|778725452|ref|XP_011658943.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 8.5e-29
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 1 

Query: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60
          MASMSAHGS  WTA +NKAFE+ALA+YD+D P+RWLNVAKAIGGKTEEEVKRHYQ+L+ED
Sbjct: 1  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRGS 80
          V HIESG++PFPYR S  S
Sbjct: 61 VNHIESGQIPFPYRKSTRS 79

The following BLAST results are available for this feature:
BLAST of CmaCh19G006720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RADL1_ARATH3.4e-2569.23Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1[more]
RADL2_ARATH6.3e-2465.38Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1[more]
RAD_ANTMA1.4e-2366.23Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1[more]
RADL3_ARATH5.0e-2159.49Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1[more]
RADL6_ARATH1.1e-2065.28Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1[more]
BLAST of CmaCh19G006720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K344_CUCSA1.2e-3491.14Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1[more]
A0A0A0K348_CUCSA2.7e-2980.77Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1[more]
A0A0A0K3K0_CUCSA5.9e-2978.48Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1[more]
A0A061E040_THECC2.1e-2674.68Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_006883 PE=4 SV=1[more]
A0A0D2W2J5_GOSRA4.7e-2676.00Uncharacterized protein OS=Gossypium raimondii GN=B456_013G036700 PE=4 SV=1[more]
BLAST of CmaCh19G006720 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G39250.11.9e-2669.23 RAD-like 1[more]
AT2G21650.13.6e-2565.38 Homeodomain-like superfamily protein[more]
AT1G75250.16.3e-2265.28 RAD-like 6[more]
AT1G19510.11.4e-2163.89 RAD-like 5[more]
AT2G18328.14.2e-1855.84 RAD-like 4[more]
BLAST of CmaCh19G006720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659092351|ref|XP_008447025.1|1.0e-3491.14PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
gi|449466805|ref|XP_004151116.1|1.8e-3491.14PREDICTED: protein RADIALIS-like 1 [Cucumis sativus][more]
gi|659092346|ref|XP_008447024.1|2.2e-2982.89PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
gi|778725458|ref|XP_004151125.2|3.8e-2980.77PREDICTED: protein RADIALIS-like 1 [Cucumis sativus][more]
gi|778725452|ref|XP_011658943.1|8.5e-2978.48PREDICTED: protein RADIALIS-like 1 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like_sf
IPR017884SANT_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G006720.1CmaCh19G006720.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 10..57
score: 1.
IPR001005SANT/Myb domainSMARTSM00717santcoord: 8..60
score: 1.
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 11..64
score: 2.
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 12..65
score: 1.64
IPR017884SANT domainPROFILEPS51293SANTcoord: 7..62
score: 9
NoneNo IPR availablePANTHERPTHR24078DNAJ HOMOLOG SUBFAMILY C MEMBERcoord: 4..71
score: 4.4
NoneNo IPR availablePANTHERPTHR24078:SF177PROTEIN DNJ-23-RELATEDcoord: 4..71
score: 4.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G006720Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G006720Cucurbita pepo (Zucchini)cmacpeB526
CmaCh19G006720Cucurbita pepo (Zucchini)cmacpeB540
CmaCh19G006720Bottle gourd (USVL1VR-Ls)cmalsiB472
CmaCh19G006720Cucumber (Gy14) v2cgybcmaB944
CmaCh19G006720Silver-seed gourdcarcmaB0238
CmaCh19G006720Silver-seed gourdcarcmaB0440
CmaCh19G006720Cucumber (Chinese Long) v3cmacucB0638
CmaCh19G006720Watermelon (97103) v2cmawmbB531
CmaCh19G006720Wax gourdcmawgoB0641
CmaCh19G006720Cucurbita maxima (Rimu)cmacmaB152
CmaCh19G006720Cucurbita maxima (Rimu)cmacmaB452
CmaCh19G006720Cucumber (Gy14) v1cgycmaB1038
CmaCh19G006720Cucurbita moschata (Rifu)cmacmoB495
CmaCh19G006720Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G006720Melon (DHL92) v3.5.1cmameB462
CmaCh19G006720Watermelon (Charleston Gray)cmawcgB460
CmaCh19G006720Watermelon (97103) v1cmawmB503