CmaCh19G005550 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGACAGTCCTCGAAGTCGATTTGGAGCTTTTAGCTAAGGTTGTAGGGTTTCAAGTTCGAGAACTTCTTTGCCTAACTTCTTCTTACCTTTCTCGAGCCGAAGAAAAATGGAAATGAAGAAGGAGAGTAGCTAGATAGGTATGGAACGTTACAAGTGGTATTAGAGCAAATCTATCTATATAAGATATGATTTAAGAAAGAATCAGGGCGGAAGGTAATGGACATATGATATTCGAGTAAAGAAGGGATACATAAATAAACCAAAATTACACCTAACGGAGAGTTTATTACATAATGACTTAGTGTTTATCCAACTCAAGTTTATGTGCCAGATCATTGATAATTCAATTATATAATAGATATTTTAATTCGTTCTTTATAAATGATTTCGTAGGTAAAGAGAAACTCGAGAAAGAAGAAGACGGATTAGGAATAGGCGTACGGACCTGTTTTTTACATATCTCTCGTTATTTGGGATCCTATTCATCTCTTGAGCTTCTATTGAATCGAGAAATAGGTTTGATTGTCCATTTTTTTTAATATAATAGTAAGACATCTTCCAGATAATTCAAATCGAAGCAATTGGATGTCCGACTCGAACCTATATGACATGACCGAGCAATAGAAATACTCTAACACTCCACCGTTGTCATATATTCCATACATCACACTAGATAGATAGCATATTCATGGTATATGATTCACTTTCAAGATGTCTTGGTGGTGAAATGGTAGACACGCGATACTCAAAATCTCGTTCATAATTTAAAAAGGGAATATGATGGAGAAGTTGTGGAGAGGAAGGAAGGAAGCAATAATAGAGATTGAATAGTTCATGCAAAAGAGAGGATCAAATCCATTCTATTTGTGATGGAATGTTCAATTATTATTTTATTTTCATTTTGGTCTTACCAAGATTTTATTCCCTCATTCTTTTTCTTTTTTCTTTATTATTTTTTTTAAATATCCTTTTTTGATTCATGGTTTGGCTCGTGAATGGATCGAAAAAACATTTGAATGAGAGTAATCTTAAAGATATGATACTTAAGAGTGTTCGTAGGTTGGGTTGAGTTGGGTCAGGTTGAGATATTTTGTTGTGAGATACCCTAACCGTTGGAGAGTAGAACGAAACATTGTCTATAAGGGTGCATTTTAAAACGGTGAGACTGATGACGATACGTAACGGGTCAGCGGTGGGCTTGAGCTGTTACAAATGGTATAAGAGTCAGACACTAGACATTGTGCCCGCGAGAATGCTGGCCCCTAAGGGGGTGGATTGTGGATTGTGAGGACATTGGGCCTGTAAGGGGGTGGACGTCGGTTGGACTTCTCCGCTAACCAATGAATAAGATTTATTTTTCATTCCATATTTTTATCCTCTGATGGTTCCGATATTTTACAACATCCCATGCACGATATTTATTTGTTTTTAACTTCTTCTATGAGTGAGAATTATCCCCCTAACTAACACATATCCCATTTTTGCACAGAAGGGTTATGAAAATCCACGAGAAGCAACCAACCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGGATATCGAGGTTCCACAAGCGGTACTTCCTGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAACTGAAACAAGTTCTTGCGAATGAGAAAAGGGGCGATTTGAATGTGGGAGTTGTTCTTATTTTACCCGAGTTATTTTAAGATGTTTTGTTATCACTCATATGCTTCTTAGAAAGACTCATAGAAGGTCGATCACCCGACATAGAATTGTTCTAAGTCAAGCATGCTTAACTTTAAACTTTTTATAATTGAGCTACCGAAAAGAAAAGAGTACTTTAGTATAGATAGTGTCTCTCAATTTTTAAAAATATTTCTTAATTATCGTATATACATTTCCTTTACTCGAACATCCGAGTCATAAATTTGTTAAATTAAGGTGAAATTAGGTGAGCTGTCGTTACTTTGTTGTGTTTCACATTCCTTTGAAATGTCAAGGGGACAGACAAGACACACGAGGGATTCATGTCGGAATGTCGTGTTCCATAA ATGACAGTCCTCGAAGTCGATTTGGAGCTTTTAGCTAAGAAGGGTTATGAAAATCCACGAGAAGCAACCAACCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGGATATCGAGGTTCCACAAGCGGTACTTCCTGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAACTGAAACAAGGGACAGACAAGACACACGAGGGATTCATGTCGGAATGTCGTGTTCCATAA ATGACAGTCCTCGAAGTCGATTTGGAGCTTTTAGCTAAGAAGGGTTATGAAAATCCACGAGAAGCAACCAACCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGGATATCGAGGTTCCACAAGCGGTACTTCCTGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAACTGAAACAAGGGACAGACAAGACACACGAGGGATTCATGTCGGAATGTCGTGTTCCATAA MTVLEVDLELLAKKGYENPREATNRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQGTDKTHEGFMSECRVP
BLAST of CmaCh19G005550 vs. Swiss-Prot
Match: CYF_GOSHI (Cytochrome f OS=Gossypium hirsutum GN=petA PE=3 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 2.9e-24 Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of CmaCh19G005550 vs. Swiss-Prot
Match: CYF_GOSBA (Cytochrome f OS=Gossypium barbadense GN=petA PE=3 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 2.9e-24 Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of CmaCh19G005550 vs. Swiss-Prot
Match: CYF_CALFG (Cytochrome f OS=Calycanthus floridus var. glaucus GN=petA PE=3 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 2.9e-24 Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of CmaCh19G005550 vs. Swiss-Prot
Match: CYF_CARPA (Cytochrome f OS=Carica papaya GN=petA PE=3 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 2.9e-24 Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of CmaCh19G005550 vs. Swiss-Prot
Match: CYF_CERDE (Cytochrome f OS=Ceratophyllum demersum GN=petA PE=3 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 2.9e-24 Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of CmaCh19G005550 vs. TrEMBL
Match: Q5JJR7_ORYSJ (Putative cytochrome f OS=Oryza sativa subsp. japonica GN=OSJNBa0042P21.25 PE=4 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 8.6e-23 Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 1
BLAST of CmaCh19G005550 vs. TrEMBL
Match: A0A0K1Z9A5_9ASTR (Cytochrome f OS=Vernonia baldwinii GN=petA PE=3 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 1.1e-22 Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of CmaCh19G005550 vs. TrEMBL
Match: M4M299_9ERIC (Cytochrome f OS=Ardisia polysticta GN=petA PE=3 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 1.1e-22 Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of CmaCh19G005550 vs. TrEMBL
Match: A0A120L1R9_9ASPA (Cytochrome f OS=Polygonatum sibiricum GN=petA PE=3 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 1.1e-22 Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of CmaCh19G005550 vs. TrEMBL
Match: A0A0S1YBQ6_9ASPA (Cytochrome f OS=Polygonatum verticillatum GN=petA PE=3 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 1.1e-22 Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of CmaCh19G005550 vs. TAIR10
Match: ATCG00540.1 (ATCG00540.1 photosynthetic electron transfer A) HSP 1 Score: 107.1 bits (266), Expect = 5.3e-24 Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 1
BLAST of CmaCh19G005550 vs. NCBI nr
Match: gi|57900550|dbj|BAD88290.1| (putative cytochrome f [Oryza sativa Japonica Group]) HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22 Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 1
BLAST of CmaCh19G005550 vs. NCBI nr
Match: gi|937633288|gb|ALI90224.1| (PetA, partial (chloroplast) [Sphenoclea zeylanica]) HSP 1 Score: 113.6 bits (283), Expect = 1.6e-22 Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of CmaCh19G005550 vs. NCBI nr
Match: gi|482651212|ref|YP_007890386.1| (cytochrome f (chloroplast) [Ardisia polysticta]) HSP 1 Score: 113.6 bits (283), Expect = 1.6e-22 Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of CmaCh19G005550 vs. NCBI nr
Match: gi|748993458|gb|AJE73867.1| (cytochrome f (plastid) [Vernonia baldwinii]) HSP 1 Score: 113.6 bits (283), Expect = 1.6e-22 Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1
BLAST of CmaCh19G005550 vs. NCBI nr
Match: gi|749111720|ref|YP_009115695.1| (component of cytochrome b6/f complex [Lysimachia coreana]) HSP 1 Score: 113.6 bits (283), Expect = 1.6e-22 Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |