CmaCh19G005060 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G005060
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Descriptionstructural constituent of ribosome;protein binding
LocationCma_Chr19 : 5976956 .. 5977715 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTTGGTTTCGCAGGAACAACAAAAACAACCATTTCGCTCTTTCCTTTCTTCGGTGCTACCTTTTTCTTTCCAAGGGATGGGGTTGAGATGTATAAAAACCTTTTTTTAGGATACCCAGAACAACCCTTACGTCAATTAAGGATCAAATGTTGTAACCTCATGGATAAGGATAAGGTAATAGAACTGATAGAGAAATTCATAGGCGTAGGTGGGATAAGAGAATTGATAAAGGGAATAGAGATGATGATAGAGATGAAACAGAAGAATTCTGTATGGGTACAACTCTTATTTGAACCAATTGCAAAACAGTTCTTTTTAAATTTTAATTTAATTATAATCCATGTCATATAATATTGTTTATTAATACTCGATTAATTTCTAATTAATTAATTAAAAATTAATGAAAATTAATTATTATAATCAATTTTATCTCATATTTAAGCGAATATAATTATTTTATGGATTCTAAAATTCTAAAATTTGTGTTTAAATTTATAAAGAGGTTTTGTTAAATTATCTTTTATATTTTCTCAGGCTCACAATTTCAACAAACTTAAACTTTCTTTCTTACCAACATTCTCCAATAATTTTCGATGACAAATCTAGAAAATAACACTCCAATCGATCTCGAACTTAGACTCTCTCTCCGTCCATCGTCACCACCGCTCTCTCTCCATCCACCGTCGCCGCTGCTCCAATTACGTCCACAGTCGCCGTCGCCACCTCCCCAATTTACAATGACAACAACAATTAA

mRNA sequence

ATGAATCTTGGTTTCGCAGGAACAACAAAAACAACCATTTCGCTCTTTCCTTTCTTCGGTGCTACCTTTTTCTTTCCAAGGGATGGGGTTGAGATGTATAAAAACCTTTTTTTAGGATACCCAGAACAACCCTTACGTCAATTAAGGATCAAATGTTGTAACCTCATGGATAAGGATAAGACTCTCTCTCCGTCCATCGTCACCACCGCTCTCTCTCCATCCACCGTCGCCGCTGCTCCAATTACGTCCACAGTCGCCGTCGCCACCTCCCCAATTTACAATGACAACAACAATTAA

Coding sequence (CDS)

ATGAATCTTGGTTTCGCAGGAACAACAAAAACAACCATTTCGCTCTTTCCTTTCTTCGGTGCTACCTTTTTCTTTCCAAGGGATGGGGTTGAGATGTATAAAAACCTTTTTTTAGGATACCCAGAACAACCCTTACGTCAATTAAGGATCAAATGTTGTAACCTCATGGATAAGGATAAGACTCTCTCTCCGTCCATCGTCACCACCGCTCTCTCTCCATCCACCGTCGCCGCTGCTCCAATTACGTCCACAGTCGCCGTCGCCACCTCCCCAATTTACAATGACAACAACAATTAA

Protein sequence

MNLGFAGTTKTTISLFPFFGATFFFPRDGVEMYKNLFLGYPEQPLRQLRIKCCNLMDKDKTLSPSIVTTALSPSTVAAAPITSTVAVATSPIYNDNNN
Homology
[Close]
BLAST of CmaCh19G005060 vs. Swiss-Prot
Match: RT03_ORYSJ (Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica GN=RPS3 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.4e-17
Identity = 46/62 (74.19%), Postives = 49/62 (79.03%), Query Frame = 1 

Query: 2   NLGFAGTTKTTISLFPFFGATFFFPRDGVEMYKNLFLGYP-EQPLRQLRIKCCNLMDKDK 61
           +L FAGTTKTTISLFPFFGATFFFPRDGV +Y N F  Y  EQ L QLRIKC NLM KDK
Sbjct: 295 DLRFAGTTKTTISLFPFFGATFFFPRDGVGVYNNPFFEYAREQLLGQLRIKCRNLMGKDK 354

Query: 62  TL 63
            +
Sbjct: 355 VM 356

[Close]
BLAST of CmaCh19G005060 vs. Swiss-Prot
Match: RT03_PETHY (Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.6e-16
Identity = 45/62 (72.58%), Postives = 48/62 (77.42%), Query Frame = 1 

Query: 2   NLGFAGTTKTTISLFPFFGATFFFPRDGVEMYKNLFL-GYPEQPLRQLRIKCCNLMDKDK 61
           +L FAGTTKTTISLFPFFGATFFFPRDGV +Y NLF     EQ L QLR KC NLM KDK
Sbjct: 319 DLRFAGTTKTTISLFPFFGATFFFPRDGVGVYNNLFFEDAREQLLGQLRRKCWNLMGKDK 378

Query: 62  TL 63
            +
Sbjct: 379 VM 380

[Close]
BLAST of CmaCh19G005060 vs. Swiss-Prot
Match: RT03_MAIZE (Ribosomal protein S3, mitochondrial OS=Zea mays GN=RPS3 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.0e-16
Identity = 45/62 (72.58%), Postives = 48/62 (77.42%), Query Frame = 1 

Query: 2   NLGFAGTTKTTISLFPFFGATFFFPRDGVEMYKNLFLGYP-EQPLRQLRIKCCNLMDKDK 61
           +L FAGTTKTTISLFPFFGATFFF RDGV +Y N F  Y  EQ L QLRIKC NLM KDK
Sbjct: 316 DLRFAGTTKTTISLFPFFGATFFFSRDGVGVYNNPFYEYAREQLLGQLRIKCRNLMGKDK 375

Query: 62  TL 63
            +
Sbjct: 376 VM 377

[Close]
BLAST of CmaCh19G005060 vs. Swiss-Prot
Match: RT03_OENBE (Ribosomal protein S3, mitochondrial OS=Oenothera berteroana GN=RPS3 PE=3 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-15
Identity = 44/62 (70.97%), Postives = 48/62 (77.42%), Query Frame = 1 

Query: 2   NLGFAGTTKTTISLFPFFGATFFFPRDGVEMYKNLFL-GYPEQPLRQLRIKCCNLMDKDK 61
           +L FAG TKTTISLFPFFGATFFFPRDGV +YK+LF     EQ L QLRIKC  LM KDK
Sbjct: 320 DLRFAGRTKTTISLFPFFGATFFFPRDGVGVYKHLFFEDAREQLLGQLRIKCWKLMGKDK 379

Query: 62  TL 63
            +
Sbjct: 380 VM 381

[Close]
BLAST of CmaCh19G005060 vs. Swiss-Prot
Match: RT03_BRANA (Ribosomal protein S3, mitochondrial OS=Brassica napus GN=RPS3 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-14
Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 1 

Query: 2   NLGFAGTTKTTISLFPFFGATFFFPRDGVEMYKNLFLGYPEQPLRQLRIKCCNLMDKDKT 61
           +LGFAGTTKTTISLFPFFGATFFF RDGV +  N  L   EQ L QLR+KC NL+ KDK 
Sbjct: 318 DLGFAGTTKTTISLFPFFGATFFFLRDGVGVTNN--LDAREQLLNQLRVKCWNLLGKDKV 376

Query: 62  L 63
           +
Sbjct: 378 M 376

[Close]
BLAST of CmaCh19G005060 vs. TrEMBL
Match: E5DLV4_9ASPA (Ribosomal protein S3 (Fragment) OS=Blandfordia grandiflora GN=rps3 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-16
Identity = 48/62 (77.42%), Postives = 51/62 (82.26%), Query Frame = 1 

Query: 2   NLGFAGTTKTTISLFPFFGATFFFPRDGVEMYKNLFLGYP-EQPLRQLRIKCCNLMDKDK 61
           +L FAGTTKTTISLFPFFGATFFFPRDGV +Y NLFL Y  EQ L QLRIKC NLM KDK
Sbjct: 249 DLRFAGTTKTTISLFPFFGATFFFPRDGVGVYNNLFLEYAREQLLGQLRIKCWNLMGKDK 308

Query: 62  TL 63
            +
Sbjct: 309 VM 310

[Close]
BLAST of CmaCh19G005060 vs. TrEMBL
Match: E5DLX5_9LILI (Ribosomal protein S3 (Fragment) OS=Carludovica palmata GN=rps3 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-16
Identity = 48/62 (77.42%), Postives = 51/62 (82.26%), Query Frame = 1 

Query: 2   NLGFAGTTKTTISLFPFFGATFFFPRDGVEMYKNLFLGYP-EQPLRQLRIKCCNLMDKDK 61
           +L FAGTTKTTISLFPFFGATFFFPRDGV +Y NLFL Y  EQ L QLRIKC NLM KDK
Sbjct: 251 DLRFAGTTKTTISLFPFFGATFFFPRDGVGVYNNLFLEYAREQLLGQLRIKCWNLMGKDK 310

Query: 62  TL 63
            +
Sbjct: 311 VM 312

[Close]
BLAST of CmaCh19G005060 vs. TrEMBL
Match: E5DMJ2_9LILI (Ribosomal protein S3 (Fragment) OS=Strelitzia reginae GN=rps3 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-16
Identity = 48/62 (77.42%), Postives = 51/62 (82.26%), Query Frame = 1 

Query: 2   NLGFAGTTKTTISLFPFFGATFFFPRDGVEMYKNLFLGYP-EQPLRQLRIKCCNLMDKDK 61
           +L FAGTTKTTISLFPFFGATFFFPRDGV +Y NLFL Y  EQ L QLRIKC NLM KDK
Sbjct: 253 DLRFAGTTKTTISLFPFFGATFFFPRDGVGVYNNLFLEYAREQLLGQLRIKCWNLMGKDK 312

Query: 62  TL 63
            +
Sbjct: 313 VM 314

[Close]
BLAST of CmaCh19G005060 vs. TrEMBL
Match: E5DLZ9_9LILI (Ribosomal protein S3 (Fragment) OS=Croomia pauciflora GN=rps3 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.2e-16
Identity = 47/62 (75.81%), Postives = 51/62 (82.26%), Query Frame = 1 

Query: 2   NLGFAGTTKTTISLFPFFGATFFFPRDGVEMYKNLFLGYP-EQPLRQLRIKCCNLMDKDK 61
           +L FAGTTKTTISLFPFFGATFFFPRDGV +Y NLF+ Y  EQ L QLRIKC NLM KDK
Sbjct: 229 DLRFAGTTKTTISLFPFFGATFFFPRDGVGVYNNLFIEYAREQLLGQLRIKCWNLMGKDK 288

Query: 62  TL 63
            +
Sbjct: 289 VM 290

[Close]
BLAST of CmaCh19G005060 vs. TrEMBL
Match: E5DLY2_9LILI (Ribosomal protein S3 (Fragment) OS=Chamaedorea tenella GN=rps3 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.5e-16
Identity = 47/62 (75.81%), Postives = 51/62 (82.26%), Query Frame = 1 

Query: 2   NLGFAGTTKTTISLFPFFGATFFFPRDGVEMYKNLFLGYP-EQPLRQLRIKCCNLMDKDK 61
           +L FAGTTKTTISLFPFFGATFFFPRDGV +YKNLF  Y  EQ L QLRIKC NLM K+K
Sbjct: 247 DLRFAGTTKTTISLFPFFGATFFFPRDGVGVYKNLFFEYAREQLLGQLRIKCWNLMGKEK 306

Query: 62  TL 63
            +
Sbjct: 307 VM 308

[Close]
BLAST of CmaCh19G005060 vs. TAIR10
Match: ATMG00090.1 (ATMG00090.1 structural constituent of ribosome;protein binding)

HSP 1 Score: 80.1 bits (196), Expect = 8.4e-16
Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 1 

Query: 2   NLGFAGTTKTTISLFPFFGATFFFPRDGVEMYKNLFLGYPEQPLRQLRIKCCNLMDKDKT 61
           +L FAGTTKTTISLFPFFGATFFF RDGV +Y N  L   EQ L QLR+KC NL+ KDK 
Sbjct: 319 DLRFAGTTKTTISLFPFFGATFFFLRDGVGVYNN--LDAREQLLNQLRVKCWNLVGKDKI 377

Query: 62  L 63
           +
Sbjct: 379 M 377

[Close]
BLAST of CmaCh19G005060 vs. NCBI nr
Match: gi|302749061|gb|ADL64010.1| (ribosomal protein S3, partial (mitochondrion) [Strelitzia reginae])

HSP 1 Score: 92.8 bits (229), Expect = 3.5e-16
Identity = 48/62 (77.42%), Postives = 51/62 (82.26%), Query Frame = 1 

Query: 2   NLGFAGTTKTTISLFPFFGATFFFPRDGVEMYKNLFLGYP-EQPLRQLRIKCCNLMDKDK 61
           +L FAGTTKTTISLFPFFGATFFFPRDGV +Y NLFL Y  EQ L QLRIKC NLM KDK
Sbjct: 253 DLRFAGTTKTTISLFPFFGATFFFPRDGVGVYNNLFLEYAREQLLGQLRIKCWNLMGKDK 312

Query: 62  TL 63
            +
Sbjct: 313 VM 314

[Close]
BLAST of CmaCh19G005060 vs. NCBI nr
Match: gi|302748583|gb|ADL63772.1| (ribosomal protein S3, partial (mitochondrion) [Blandfordia grandiflora])

HSP 1 Score: 92.8 bits (229), Expect = 3.5e-16
Identity = 48/62 (77.42%), Postives = 51/62 (82.26%), Query Frame = 1 

Query: 2   NLGFAGTTKTTISLFPFFGATFFFPRDGVEMYKNLFLGYP-EQPLRQLRIKCCNLMDKDK 61
           +L FAGTTKTTISLFPFFGATFFFPRDGV +Y NLFL Y  EQ L QLRIKC NLM KDK
Sbjct: 249 DLRFAGTTKTTISLFPFFGATFFFPRDGVGVYNNLFLEYAREQLLGQLRIKCWNLMGKDK 308

Query: 62  TL 63
            +
Sbjct: 309 VM 310

[Close]
BLAST of CmaCh19G005060 vs. NCBI nr
Match: gi|302748625|gb|ADL63793.1| (ribosomal protein S3, partial (mitochondrion) [Carludovica palmata])

HSP 1 Score: 92.8 bits (229), Expect = 3.5e-16
Identity = 48/62 (77.42%), Postives = 51/62 (82.26%), Query Frame = 1 

Query: 2   NLGFAGTTKTTISLFPFFGATFFFPRDGVEMYKNLFLGYP-EQPLRQLRIKCCNLMDKDK 61
           +L FAGTTKTTISLFPFFGATFFFPRDGV +Y NLFL Y  EQ L QLRIKC NLM KDK
Sbjct: 251 DLRFAGTTKTTISLFPFFGATFFFPRDGVGVYNNLFLEYAREQLLGQLRIKCWNLMGKDK 310

Query: 62  TL 63
            +
Sbjct: 311 VM 312

[Close]
BLAST of CmaCh19G005060 vs. NCBI nr
Match: gi|302748673|gb|ADL63817.1| (ribosomal protein S3, partial (mitochondrion) [Croomia pauciflora])

HSP 1 Score: 92.0 bits (227), Expect = 6.0e-16
Identity = 47/62 (75.81%), Postives = 51/62 (82.26%), Query Frame = 1 

Query: 2   NLGFAGTTKTTISLFPFFGATFFFPRDGVEMYKNLFLGYP-EQPLRQLRIKCCNLMDKDK 61
           +L FAGTTKTTISLFPFFGATFFFPRDGV +Y NLF+ Y  EQ L QLRIKC NLM KDK
Sbjct: 229 DLRFAGTTKTTISLFPFFGATFFFPRDGVGVYNNLFIEYAREQLLGQLRIKCWNLMGKDK 288

Query: 62  TL 63
            +
Sbjct: 289 VM 290

[Close]
BLAST of CmaCh19G005060 vs. NCBI nr
Match: gi|372450221|ref|YP_005090373.1| (ribosomal protein S3 (mitochondrion) [Phoenix dactylifera])

HSP 1 Score: 91.7 bits (226), Expect = 7.9e-16
Identity = 47/62 (75.81%), Postives = 51/62 (82.26%), Query Frame = 1 

Query: 2   NLGFAGTTKTTISLFPFFGATFFFPRDGVEMYKNLFLGYP-EQPLRQLRIKCCNLMDKDK 61
           +L FAGTTKTTISLFPFFGATFFFPRDGV +YKNLF  Y  EQ L QLRIKC NLM K+K
Sbjct: 318 DLRFAGTTKTTISLFPFFGATFFFPRDGVGVYKNLFFEYAREQLLGQLRIKCWNLMGKEK 377

Query: 62  TL 63
            +
Sbjct: 378 VM 379

The following BLAST results are available for this feature:
BLAST of CmaCh19G005060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RT03_ORYSJ5.4e-1774.19Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica GN=RPS3 PE=3... [more]
RT03_PETHY4.6e-1672.58Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1[more]
RT03_MAIZE6.0e-1672.58Ribosomal protein S3, mitochondrial OS=Zea mays GN=RPS3 PE=3 SV=1[more]
RT03_OENBE1.8e-1570.97Ribosomal protein S3, mitochondrial OS=Oenothera berteroana GN=RPS3 PE=3 SV=2[more]
RT03_BRANA1.1e-1468.85Ribosomal protein S3, mitochondrial OS=Brassica napus GN=RPS3 PE=3 SV=1[more]
BLAST of CmaCh19G005060 vs. TrEMBL
Match NameE-valueIdentityDescription
E5DLV4_9ASPA2.5e-1677.42Ribosomal protein S3 (Fragment) OS=Blandfordia grandiflora GN=rps3 PE=3 SV=1[more]
E5DLX5_9LILI2.5e-1677.42Ribosomal protein S3 (Fragment) OS=Carludovica palmata GN=rps3 PE=3 SV=1[more]
E5DMJ2_9LILI2.5e-1677.42Ribosomal protein S3 (Fragment) OS=Strelitzia reginae GN=rps3 PE=3 SV=1[more]
E5DLZ9_9LILI4.2e-1675.81Ribosomal protein S3 (Fragment) OS=Croomia pauciflora GN=rps3 PE=3 SV=1[more]
E5DLY2_9LILI5.5e-1675.81Ribosomal protein S3 (Fragment) OS=Chamaedorea tenella GN=rps3 PE=3 SV=1[more]
BLAST of CmaCh19G005060 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00090.18.4e-1668.85ATMG00090.1 structural constituent of ribosome;protein binding[more]
BLAST of CmaCh19G005060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|302749061|gb|ADL64010.1|3.5e-1677.42ribosomal protein S3, partial (mitochondrion) [Strelitzia reginae][more]
gi|302748583|gb|ADL63772.1|3.5e-1677.42ribosomal protein S3, partial (mitochondrion) [Blandfordia grandiflora][more]
gi|302748625|gb|ADL63793.1|3.5e-1677.42ribosomal protein S3, partial (mitochondrion) [Carludovica palmata][more]
gi|302748673|gb|ADL63817.1|6.0e-1675.81ribosomal protein S3, partial (mitochondrion) [Croomia pauciflora][more]
gi|372450221|ref|YP_005090373.1|7.9e-1675.81ribosomal protein S3 (mitochondrion) [Phoenix dactylifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G005060.1CmaCh19G005060.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G005060Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G005060Cucurbita pepo (Zucchini)cmacpeB539
CmaCh19G005060Bottle gourd (USVL1VR-Ls)cmalsiB483
CmaCh19G005060Bottle gourd (USVL1VR-Ls)cmalsiB484
CmaCh19G005060Cucumber (Gy14) v2cgybcmaB945
CmaCh19G005060Cucumber (Gy14) v2cgybcmaB952
CmaCh19G005060Melon (DHL92) v3.6.1cmamedB531
CmaCh19G005060Melon (DHL92) v3.6.1cmamedB535
CmaCh19G005060Melon (DHL92) v3.6.1cmamedB562
CmaCh19G005060Silver-seed gourdcarcmaB0528
CmaCh19G005060Silver-seed gourdcarcmaB0632
CmaCh19G005060Silver-seed gourdcarcmaB1026
CmaCh19G005060Cucumber (Chinese Long) v3cmacucB0639
CmaCh19G005060Cucumber (Chinese Long) v3cmacucB0645
CmaCh19G005060Watermelon (97103) v2cmawmbB524
CmaCh19G005060Watermelon (97103) v2cmawmbB555
CmaCh19G005060Wax gourdcmawgoB0634
CmaCh19G005060Wax gourdcmawgoB0642
CmaCh19G005060Cucurbita maxima (Rimu)cmacmaB149
CmaCh19G005060Cucumber (Gy14) v1cgycmaB0624
CmaCh19G005060Cucumber (Gy14) v1cgycmaB0627
CmaCh19G005060Cucurbita moschata (Rifu)cmacmoB494
CmaCh19G005060Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G005060Cucurbita moschata (Rifu)cmacmoB530
CmaCh19G005060Wild cucumber (PI 183967)cmacpiB534
CmaCh19G005060Wild cucumber (PI 183967)cmacpiB541
CmaCh19G005060Cucumber (Chinese Long) v2cmacuB528
CmaCh19G005060Cucumber (Chinese Long) v2cmacuB534
CmaCh19G005060Melon (DHL92) v3.5.1cmameB458
CmaCh19G005060Melon (DHL92) v3.5.1cmameB463
CmaCh19G005060Watermelon (Charleston Gray)cmawcgB447
CmaCh19G005060Watermelon (97103) v1cmawmB478