CmaCh19G004950 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G004950
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr19 : 5855840 .. 5856776 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGACAGCTTCAAAAGTGGGTATGCTTAGCCTATAAACACACAAACGAGAACTCTCTAGATGCTCCACTTTTCCAACTGCTCCTTTCTTCTTCAATACAACTAGAATCTTTCCTTTTCATTGTCAAAAAACACGAGCAAATAGTGATAAAACAAAGAGAATCCCATAAACTCCATATCTTCTTCTTAAACACCTTCTTCTTCTCTTCATTTAAGCTCGTGTTGATCCGAAGATATGAGCGATCCCAAATATGCCTATCCGTACCCACCTCCTCCAGGTATTACGTGCCGTTTGTCTGTTGAGCTATGCTTAAGTTGATCGCTTTCTAGGTCTCGTTTGATTTAGCGATTTGGATTATATGATCTATTTTCAGGAGGGTATTATCAAGGACCGCCCGTGATGGCACCGCCGCAATACGCTGCACCGCCACCGAGAAGACAACCGGGGTTCTTAGAAGGATGGTATGTCAAAAAGGTTTGTTGTTTGTTGAATGGTTTAGGGTTAGAATTTGGCTAACAAAGGGTTTAACTTTGTGTGATGCAGCCTTGCAGCTCTGTGCTGCTGCTGCCTCCTTGATGAGTGCTGCTGTGATCCTTCCATACTCCTTGTTACTTGATATGAGCTTTGCTTGCCTAATTTGTAGCTGTGAATTGGGTTCTTTTCTTTTATTTTGCCTTCTTTAGGAGTGTGTTTGAGTTTGTATAAGCTTTGGAAATAATATTGTTGATTGGTGTCTAGAACAAAGCTTTGTCTTGATGTAAAGTGTAGAGTTTAATTACGAAAGTCGTGAAATTTGTCGATCATTTTGATTTTTCGACTAAAAATTTTGAGGTTAAACCGCTCCTTCTAGGTTTCAAATTCAAGAAACAAAAACGTTCTTGTATCGTTTGCTTAAGAAAATTGTGAGATATCACGTTGGTTGGAAATGAGAACGAAAC

mRNA sequence

AAGACAGCTTCAAAAGTGGGTATGCTTAGCCTATAAACACACAAACGAGAACTCTCTAGATGCTCCACTTTTCCAACTGCTCCTTTCTTCTTCAATACAACTAGAATCTTTCCTTTTCATTGTCAAAAAACACGAGCAAATAGTGATAAAACAAAGAGAATCCCATAAACTCCATATCTTCTTCTTAAACACCTTCTTCTTCTCTTCATTTAAGCTCGTGTTGATCCGAAGATATGAGCGATCCCAAATATGCCTATCCGTACCCACCTCCTCCAGGAGGGTATTATCAAGGACCGCCCGTGATGGCACCGCCGCAATACGCTGCACCGCCACCGAGAAGACAACCGGGGTTCTTAGAAGGATGCCTTGCAGCTCTGTGCTGCTGCTGCCTCCTTGATGAGTGCTGCTGTGATCCTTCCATACTCCTTGTTACTTGATATGAGCTTTGCTTGCCTAATTTGTAGCTGTGAATTGGGTTCTTTTCTTTTATTTTGCCTTCTTTAGGAGTGTGTTTGAGTTTGTATAAGCTTTGGAAATAATATTGTTGATTGGTGTCTAGAACAAAGCTTTGTCTTGATGTAAAGTGTAGAGTTTAATTACGAAAGTCGTGAAATTTGTCGATCATTTTGATTTTTCGACTAAAAATTTTGAGGTTAAACCGCTCCTTCTAGGTTTCAAATTCAAGAAACAAAAACGTTCTTGTATCGTTTGCTTAAGAAAATTGTGAGATATCACGTTGGTTGGAAATGAGAACGAAAC

Coding sequence (CDS)

ATGAGCGATCCCAAATATGCCTATCCGTACCCACCTCCTCCAGGAGGGTATTATCAAGGACCGCCCGTGATGGCACCGCCGCAATACGCTGCACCGCCACCGAGAAGACAACCGGGGTTCTTAGAAGGATGCCTTGCAGCTCTGTGCTGCTGCTGCCTCCTTGATGAGTGCTGCTGTGATCCTTCCATACTCCTTGTTACTTGA

Protein sequence

MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCCLLDECCCDPSILLVT

Homology

[Close]

BLAST of CmaCh19G004950 vs. Swiss-Prot
Match: CYT1A_ARATH (Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thaliana GN=At2g41420 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-07
Identity = 40/75 (53.33%), Postives = 41/75 (54.67%), Query Frame = 1


Query: 4  PKYAYP---YPP--------PPGGY------YQGPPVMAPPQYAAPPPRRQ----PGFLE 58
          PK AYP   YPP        PP GY       QG P    PQY  PP  +Q    PGFLE
Sbjct: 23 PKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYPPPYAPQYPPPPQHQQQQSSPGFLE 82

[Close]

BLAST of CmaCh19G004950 vs. TrEMBL
Match: B9SMJ5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0230320 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.0e-26
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCCLLDECCCD 60
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCCL+DECCCD
Sbjct: 1  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCCLIDECCCD 60

Query: 61 PSILLVT 68
          PSI+ V+
Sbjct: 61 PSIIFVS 65

[Close]

BLAST of CmaCh19G004950 vs. TrEMBL
Match: A0A0D2NVV1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G036100 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-25
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCCLLDECCCD 60
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPPRR+PGFLEGCLAALCCCCL+DECCCD
Sbjct: 1  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRREPGFLEGCLAALCCCCLIDECCCD 60

Query: 61 PSILLVT 68
          PSI+ ++
Sbjct: 61 PSIIFIS 65

[Close]

BLAST of CmaCh19G004950 vs. TrEMBL
Match: D7T5D4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0415g00070 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.0e-25
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCCLLDECCCD 60
          M+DPKYAYPYP    GYYQGPPVMAPPQYAAPPPRR+PGFLEGCLAALCCCCL+DECCCD
Sbjct: 1  MNDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRREPGFLEGCLAALCCCCLIDECCCD 60

Query: 61 PSILLVT 68
          PSI+ V+
Sbjct: 61 PSIIFVS 65

[Close]

BLAST of CmaCh19G004950 vs. TrEMBL
Match: V7CN31_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G143000g PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.6e-25
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 1


Query: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQY-AAPPPRRQPGFLEGCLAALCCCCLLDECCC 60
          MSDPKYAYPYPP   GYYQGPPVMAPPQY AAPPPRRQ GFLEGCLAALCCCCL+DECCC
Sbjct: 1  MSDPKYAYPYPPQGQGYYQGPPVMAPPQYYAAPPPRRQAGFLEGCLAALCCCCLIDECCC 60

Query: 61 DPSILLVT 68
          DPSI+ ++
Sbjct: 61 DPSIIFIS 68

[Close]

BLAST of CmaCh19G004950 vs. TrEMBL
Match: A0A0D9V6G1_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.4e-25
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 1


Query: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCCLLDECCCD 60
          M D +Y Y YPPPP GYY GPPVMAPPQYAAPPPRR+P FLEGCLAALCCCCL+DECCCD
Sbjct: 1  MGDRRYGYSYPPPPQGYYNGPPVMAPPQYAAPPPRREPSFLEGCLAALCCCCLIDECCCD 60

Query: 61 PSILLVT 68
          PS++ VT
Sbjct: 61 PSVIFVT 67

[Close]

BLAST of CmaCh19G004950 vs. TAIR10
Match: AT4G33660.1 (AT4G33660.1 unknown protein)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-18
Identity = 49/74 (66.22%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 1  MSDPKYAYPYPPPPGGYYQGPP--VMAPPQY--------AAPPPRRQPGFLEGCLAALCC 60
          MSDPKYAYPYP P G Y QGPP  V  PPQY          PPP R+ GFLEG LAALCC
Sbjct: 1  MSDPKYAYPYPAP-GNYPQGPPPPVGVPPQYYPPPPPPPPPPPPPRKVGFLEGLLAALCC 60

Query: 61 CCLLDECCCDPSIL 65
          CCL+DECCCDP+I+
Sbjct: 61 CCLVDECCCDPTII 73

[Close]

BLAST of CmaCh19G004950 vs. TAIR10
Match: AT5G67600.1 (AT5G67600.1 unknown protein)

HSP 1 Score: 57.8 bits (138), Expect = 3.0e-09
Identity = 37/63 (58.73%), Postives = 40/63 (63.49%), Query Frame = 1


Query: 4  PKYAYP---YPP---PPGGYYQGPPVMA--PPQYAAPPPRRQ-PGFLEGCLAALCCCCLL 58
          PK  YP   YPP   PP GY QG P     PPQY+  P ++Q  G LEGCLAALCCCCLL
Sbjct: 19 PKDGYPPAGYPPAGYPPPGYAQGYPAQGYPPPQYSQAPQQKQNAGMLEGCLAALCCCCLL 78

[Close]

BLAST of CmaCh19G004950 vs. TAIR10
Match: AT2G41420.1 (AT2G41420.1 proline-rich family protein)

HSP 1 Score: 56.6 bits (135), Expect = 6.8e-09
Identity = 40/75 (53.33%), Postives = 41/75 (54.67%), Query Frame = 1


Query: 4  PKYAYP---YPP--------PPGGY------YQGPPVMAPPQYAAPPPRRQ----PGFLE 58
          PK AYP   YPP        PP GY       QG P    PQY  PP  +Q    PGFLE
Sbjct: 23 PKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYPPPYAPQYPPPPQHQQQQSSPGFLE 82

[Close]

BLAST of CmaCh19G004950 vs. NCBI nr
Match: gi|223533390|gb|EEF35140.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 124.8 bits (312), Expect = 5.7e-26
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCCLLDECCCD 60
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCCL+DECCCD
Sbjct: 1  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCCLIDECCCD 60

Query: 61 PSILLVT 68
          PSI+ V+
Sbjct: 61 PSIIFVS 65

[Close]

BLAST of CmaCh19G004950 vs. NCBI nr
Match: gi|719995883|ref|XP_010254642.1| (PREDICTED: uncharacterized protein LOC104595564 [Nelumbo nucifera])

HSP 1 Score: 124.4 bits (311), Expect = 7.5e-26
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1   MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCCLLDECCCD 60
           MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPPRR+PGFLEGCLAALCCCCLLDECCCD
Sbjct: 92  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRREPGFLEGCLAALCCCCLLDECCCD 151

Query: 61  PSILLVT 68
           PSI+ V+
Sbjct: 152 PSIIFVS 156

[Close]

BLAST of CmaCh19G004950 vs. NCBI nr
Match: gi|763750765|gb|KJB18153.1| (hypothetical protein B456_003G036100 [Gossypium raimondii])

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-25
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCCLLDECCCD 60
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPPRR+PGFLEGCLAALCCCCL+DECCCD
Sbjct: 1  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRREPGFLEGCLAALCCCCLIDECCCD 60

Query: 61 PSILLVT 68
          PSI+ ++
Sbjct: 61 PSIIFIS 65

[Close]

BLAST of CmaCh19G004950 vs. NCBI nr
Match: gi|296084629|emb|CBI25717.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 122.5 bits (306), Expect = 2.8e-25
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCCLLDECCCD 60
          M+DPKYAYPYP    GYYQGPPVMAPPQYAAPPPRR+PGFLEGCLAALCCCCL+DECCCD
Sbjct: 1  MNDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRREPGFLEGCLAALCCCCLIDECCCD 60

Query: 61 PSILLVT 68
          PSI+ V+
Sbjct: 61 PSIIFVS 65

[Close]

BLAST of CmaCh19G004950 vs. NCBI nr
Match: gi|593790566|ref|XP_007158322.1| (hypothetical protein PHAVU_002G143000g [Phaseolus vulgaris])

HSP 1 Score: 122.1 bits (305), Expect = 3.7e-25
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 1


Query: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQY-AAPPPRRQPGFLEGCLAALCCCCLLDECCC 60
          MSDPKYAYPYPP   GYYQGPPVMAPPQY AAPPPRRQ GFLEGCLAALCCCCL+DECCC
Sbjct: 1  MSDPKYAYPYPPQGQGYYQGPPVMAPPQYYAAPPPRRQAGFLEGCLAALCCCCLIDECCC 60

Query: 61 DPSILLVT 68
          DPSI+ ++
Sbjct: 61 DPSIIFIS 68

The following BLAST results are available for this feature:

BLAST of CmaCh19G004950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CYT1A_ARATH	1.2e-07	53.33	Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thali...	[more]

BLAST of CmaCh19G004950 vs. TrEMBL


Match Name	E-value	Identity	Description
B9SMJ5_RICCO	4.0e-26	88.06	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0230320 PE=4 SV=1	[more]
A0A0D2NVV1_GOSRA	1.2e-25	85.07	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G036100 PE=4 SV=1	[more]
D7T5D4_VITVI	2.0e-25	85.07	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0415g00070 PE=4 SV=...	[more]
V7CN31_PHAVU	2.6e-25	85.29	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G143000g PE=4 SV=1	[more]
A0A0D9V6G1_9ORYZ	3.4e-25	80.60	Uncharacterized protein OS=Leersia perrieri PE=4 SV=1	[more]

BLAST of CmaCh19G004950 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33660.1	1.2e-18	66.22	unknown protein	[more]
AT5G67600.1	3.0e-09	58.73	unknown protein	[more]
AT2G41420.1	6.8e-09	53.33	proline-rich family protein	[more]

BLAST of CmaCh19G004950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|223533390\|gb\|EEF35140.1\|	5.7e-26	88.06	conserved hypothetical protein [Ricinus communis]	[more]
gi\|719995883\|ref\|XP_010254642.1\|	7.5e-26	88.06	PREDICTED: uncharacterized protein LOC104595564 [Nelumbo nucifera]	[more]
gi\|763750765\|gb\|KJB18153.1\|	1.7e-25	85.07	hypothetical protein B456_003G036100 [Gossypium raimondii]	[more]
gi\|296084629\|emb\|CBI25717.3\|	2.8e-25	85.07	unnamed protein product [Vitis vinifera]	[more]
gi\|593790566\|ref\|XP_007158322.1\|	3.7e-25	85.29	hypothetical protein PHAVU_002G143000g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR028144	CYSTM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G004950.1	CmaCh19G004950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028144	Cysteine-rich transmembrane CYSTM domain	PFAM	PF12734	CYSTM	coord: 12..58 score: 2.8
None	No IPR available	PANTHER	PTHR31568	FAMILY NOT NAMED	coord: 1..60 score: 1.2
None	No IPR available	PANTHER	PTHR31568:SF15	SUBFAMILY NOT NAMED	coord: 1..60 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh19G004950	Carg22792	Silver-seed gourd	carcmaB0401

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G004950	Melon (DHL92) v3.6.1	cmamedB531
CmaCh19G004950	Melon (DHL92) v3.6.1	cmamedB535
CmaCh19G004950	Melon (DHL92) v3.6.1	cmamedB562
CmaCh19G004950	Silver-seed gourd	carcmaB0528
CmaCh19G004950	Silver-seed gourd	carcmaB1026
CmaCh19G004950	Cucumber (Chinese Long) v3	cmacucB0639
CmaCh19G004950	Cucumber (Chinese Long) v3	cmacucB0645
CmaCh19G004950	Watermelon (97103) v2	cmawmbB524
CmaCh19G004950	Watermelon (97103) v2	cmawmbB550
CmaCh19G004950	Watermelon (97103) v2	cmawmbB555
CmaCh19G004950	Wax gourd	cmawgoB0634
CmaCh19G004950	Wax gourd	cmawgoB0642
CmaCh19G004950	Cucurbita maxima (Rimu)	cmacmaB149
CmaCh19G004950	Cucurbita maxima (Rimu)	cmacmaB342
CmaCh19G004950	Cucumber (Gy14) v1	cgycmaB0624
CmaCh19G004950	Cucumber (Gy14) v1	cgycmaB0627
CmaCh19G004950	Cucurbita moschata (Rifu)	cmacmoB494
CmaCh19G004950	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G004950	Cucurbita moschata (Rifu)	cmacmoB530
CmaCh19G004950	Wild cucumber (PI 183967)	cmacpiB534
CmaCh19G004950	Wild cucumber (PI 183967)	cmacpiB541
CmaCh19G004950	Cucumber (Chinese Long) v2	cmacuB528
CmaCh19G004950	Cucumber (Chinese Long) v2	cmacuB534
CmaCh19G004950	Melon (DHL92) v3.5.1	cmameB458
CmaCh19G004950	Melon (DHL92) v3.5.1	cmameB463
CmaCh19G004950	Watermelon (Charleston Gray)	cmawcgB442
CmaCh19G004950	Watermelon (Charleston Gray)	cmawcgB447
CmaCh19G004950	Watermelon (Charleston Gray)	cmawcgB454
CmaCh19G004950	Watermelon (97103) v1	cmawmB473
CmaCh19G004950	Watermelon (97103) v1	cmawmB478
CmaCh19G004950	Cucurbita pepo (Zucchini)	cmacpeB522
CmaCh19G004950	Cucurbita pepo (Zucchini)	cmacpeB539
CmaCh19G004950	Bottle gourd (USVL1VR-Ls)	cmalsiB483
CmaCh19G004950	Bottle gourd (USVL1VR-Ls)	cmalsiB484
CmaCh19G004950	Cucumber (Gy14) v2	cgybcmaB945
CmaCh19G004950	Cucumber (Gy14) v2	cgybcmaB952