CmaCh19G004870 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G004870
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionMethylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial
LocationCma_Chr19 : 5815811 .. 5820110 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGATTTTTATCCCCCAAAAATTAATTTATTAACTTCATTCCATACCGATATTATCCCTCCAATTAGCTTTTCTTTTTCTTATGATAATAGACTGACAGTGGCAATAGTTGTGCAATGGGATAATCCTCTGCAGATATTCTCAATTGCTGTTACATGTGGGAATACCTTTATTTTGAAGCCTTCAGAAAAAGATCGAGGTGATTTTTATTTTTGAATTATTCCCCAAGCATCTTTATTATGAACTGTCTTCTTTTTGTTTTTGCAAGCTTATACCTATGATTAGATTCTGGAACCATAACCACTAGATTCAACTGCTATCTTAAATGACTTGATTTGACTGCAGCATCAACAAATTGTTATTTTAATTTTGGTGTTTTTTCTGCAGGATGTTGTTAATGCCATTTGTGATGATGAGGATATAAAGGCAAAATATCATTCGTCGGTTCAAACATTGTAAGCTATCTTTACTGAAATAACTTTTACTTCATGGAGTTGGCAATCTCAATACATTCTAGGTTAATTTCTACAAGTGGTTCTTGTTGCAACTTACTAAAATTCTATTATAGGATAGGGCCCTTTCCACTTTTTGTTTTTAGAATCTAGAACTGATAGTTTAGATATTTGTTCATGTGGCCATTGGAGTGTTACAAGTTATTTAATTGGTGAAACATCGTCTTACATTGGGACCTTGGCGTTCTTTACTTGGTCTACCATTAGTACAAAGTGATTTAAGTTTAGCTTTGAGGTTTTATTATTGCAGATGATTGGTTTCAATATTAAGTTTATTTTCCACACTCATATATTTGGCCTCAAGTTTATCCTATAATTGTTTTGCCATGGTCACCTTTATAAATGGATACTTATGATCCTTGCCAAGATAGGACTGAATAATTCGGCAAGTTTGTTGATTTACTTTCCTTCATTCTGCGTCTGTCATGTCTTCGGCCATCGCCTCTTCGAGATAAACATCAAGGTCTTGCCTGACCAACAAATCACTAACTTCGCCTTGCCAAACACCAAAATTATTGGTTACATCAATTTTTTCTACTTTGAGATTAGAGCTCAAAATTCTTGATGCACGCGAGTATCAGATGACTTTGCCATTTGTAACAAGTTTCTCTACCAAAAGAATAATCCGAATGAAAGTAGAAAAAAATTCTTGAAAAAATGATTTCCAAGAAAATAAGCACACTTGCAATGAGAAACTTGTCTTTGATAATCGATGGTGAGTGTGAGCTATTCTCGTGGTCGATGAAGTTGAATTTTTCAGAATACCCCAAATGCCACAACTAAAATGCTCTGATACCAATTGTTGTAATGGAAGCGAAAACAAGATCAATCGCACTCACACACCCACAAACAGAAATTAAACAAAGAGCACAAAGATTTATGTGGTTTGGAGAAAAGAAATTCTCCTACATCCACGAGTAGTAACCAATCTCAATAATCTAAGTGTTTACGAAGTGTATATCTCACACTATCAAGTCTCCCACCAAAATTCTCCCAAATGTCACTCAACAAACACAAAATGATATTCAAACTCAATCAAACTTAATACATCTCAACCATTCTAGATAACCCTTTATATAAACATAGAAGCATTAGTGTCATACATGAATCACGATGATTCATGTATCAAAATGGAAGATGAACCAAAAAAATGCCGCATAAGAGATGCATTAACCTATTCTTCATGACAACTTACATTCATGACAACTTACAACAAAACTACTCATTTTTTTTAATAGAGAATTGGAATAACAAATCAAGTATTTAACCAAAACTAATAAGCTAACTCCATACATTCTATAGTATTGTGTGTTCATTGGTGGTGAACGTGTTGAAGAAGATGTATAGAAGATGCAGCCTAGTGGGAAGAACTGCTAAAGACATTACTAAAGTTGGAGCTATTAATAGTATGAGAAGCAACACTATTTTGAGTAGCTGATGGCGATGGTGAAGACGAAGCATTTGGCCTTCTAATGGGAAGAAATTCATAAGTGGGTACAGGCAATTGAGATGGAAGAAGAGGCAATGGCGCTTCGAAGTTCATCACGTTTATGGCTTGTCTTATTGAAGGTCTGCAATTGCTATCTGGATGAGCACACCACAGACCCACCACCATCAGACGCTCCATCTGCTCCTCCTTCTGCTGCTCATCTCCAAACCTTTCTTGGATCAGTTTTGAGTCTATTCCTTCAAGAAGCTTTCCACAACCATAAAGCTTCCAAACCCACTCCACCATCACAATCTTCTCGTCCTCTGCGTTCGGGTCGAAAGGTTTTCTTCCACAAGCAATTTCCAAAGCAACCATCCCGAAGCTGTAGACATCTGATTCCTTTGAAGCCCTTCCTGTTGTTACACATTCAGGAGCCAAATAGCCAATTGTCCCAGCAAGAAGAGTTGTTTGTGAACCTTTGTTATGGTCCACTAACCTAGCTAACCCGAAATCTCCGAGCTTAGCATTAAAACTCGAATCCAACATTACATTGCTCGACTTAATATCTCTATGCACCACACATTTTTCCCACTCTTCGTGAAGATATAGTAAACCCGAAGCAATTCCTTGAGCGATTTTGTACCGACATTCCCATGTCAAGAAATTGTTTTCTTTGAAAAGATGGGCGTCTAAGCTTCCATTTGGCATGAATTCATAAACCAACAGAAGTTTACCTTTCTCATGACACCAACCAATAAGTTGAACTAAGTTTCTATGCCTCAACTGGCTGATGATCTTGACCTCAGATGCATACTCCTTTATCCCTTGCTTAGACCCTTTTGATATTCTCTTCACAGCAACATAGCAATTCAAGTCACTTTTTAAGAAACCTTTATAAACATCACCAAATCCTCCTTTTCCAAGCTTCTTATCCTCCTTAAAATTGTTCGTTGCTTGAGCCAATTCCTTATACGAAAACCGTCGAGGCCCTTTACCCCTTTCAAACTCAGAATCATCCAACATTATCTCCTCCTCTATGTTCTTCCTCGTTGCCATTCTCTTCTTCCAAACAACTATCCAAACCAACACTAACCCTCCCACTATGATAGTTGCTCCAACAACGCCCAATCCGACTGCTAGACCTGCCTTGCTACCATTACTATGACTTGTGTGCAAGTTAGGCCTTGGCTCAGGAATAGACTCTGGAATTGGCTCGGGACTTGGCTCAGGAATAGACTCTGGAATTGGCTCGGGACTTGGCTCAGGACGTGGAGACAAATTAGAACTAGAGGTGAAGTTTGGATTAAGAGTCAAGTCGAGGGTTGACTCAAAAGACCACGAATATACAGTGTGAGTTGCATATGCATAACCAGTGGAAGCAGAAAAGCCAAAAGTAACCCGTTCAGGTAGATGCAACCTCAAATCTACAACATGGTGAAGATGTTGGAACAGAATACTACCATTCAGATCAAACCCAGTAAAAGTAACACTCAAATTATGATTAACAGAATCATATTTAATCCAAGCATGATTCTTCTTCCCTCCCTTGATATCACATTTCCATATCGAATATGCAATAGATCTCATTGAACTAATATCGATACCTACATGTTCGAGCTTTTCAGGTGGGTCGAAAAGGTTGCTGTAGATATCAAACTCAACTGCAAAAAATGTGGCTGTCGCATTCGATAACTCGGGATCGTAGCCAATACCCAAGCCACTGCCTCTTGGGATGTCAGCTTGGAACTTAGAACCAACAGGGGCAAAGAAGAAGGTAAGGCCATCACCATAGGTTGATTTTTGCCTTGAGTCAATGACAAAGGAGAAATTGGTTTGGAAACTCGCCAAGTTTCTAGAGACTTTATCCCAAAGATGCAAGGGTTCGGAATACATGGCTCTTCCAACATAATTCATGTTGGCGTCGCCCCCAGTGAGCTCGATTGCTTGGTTTGTCGGGAATGCTCTTTCGTAGCTGATGTCGGTGTTGCTTGGGTTGAAAGAAGTGAAGTTGAAAGATAAAGAACTTGCAAATGGAAGTGTAGAGAGGAACAGTGAAATGTTGATAAGGAAGAACGAACATATGAGAGGAAACTTGGAATTGGAGCTTTGTGCAGCCATGGGAGAAGGCAGGAGACAATGCTTAGAGCTTCAAGTTGAAGATCAATGGGGAAGAAGACTTGTTAAGTAAAAGTAAGTCTTTGCTGTGGCATTTTCCATTTGGAATAATCGCTGACAGGACTTTCAAAACAGTGGAAGAGAAAAAAAGAAAAAAAAAATGGAAGAAATTTCTTCGCTCAAGCAAAGACTTGAACACCAAATTTAATTTAATAATTAAATACAAATTTTCTTGCCGCAC

mRNA sequence

ATGAAAGATTTTTATCCCCCAAAAATTAATTTATTAACTTCATTCCATACCGATATTATCCCTCCAATTAGCTTTTCTTTTTCTTATGATAATAGACTGACAGTGGCAATAGTTGTGCAATGGGATAATCCTCTGCAGATATTCTCAATTGCTGTTACATGTGGGAATACCTTTATTTTGAAGCCTTCAGAAAAAGATCGAGGATGTTGTTAATGCCATTTGTGATGATGAGGATATAAAGGCAAAATATCATTCGTCGGTTCAAACATTGTGGGTCGAAAAGGTTGCTGTAGATATCAAACTCAACTGCAAAAAATGTGGCTGTCGCATTCGATAACTCGGGATCGTAGCCAATACCCAAGCCACTGCCTCTTGGGATGTCAGCTTGGAACTTAGAACCAACAGGGGCAAAGAAGAAGGTAAGGCCATCACCATAGGTTGATTTTTGCCTTGAGTCAATGACAAAGGAGAAATTGGTTTGGAAACTCGCCAAGTTTCTAGAGACTTTATCCCAAAGATGCAAGGGTTCGGAATACATGGCTCTTCCAACATAATTCATGTTGGCGTCGCCCCCAGTGAGCTCGATTGCTTGGTTTGTCGGGAATGCTCTTTCGTAGCTGATGTCGGTGTTGCTTGGGTTGAAAGAAGTGAAGTTGAAAGATAAAGAACTTGCAAATGGAAGTGTAGAGAGGAACAGTGAAATGTTGATAAGGAAGAACGAACATATGAGAGGAAACTTGGAATTGGAGCTTTGTGCAGCCATGGGAGAAGGCAGGAGACAATGCTTAGAGCTTCAAGTTGAAGATCAATGGGGAAGAAGACTTGTTAAGTAAAAGTAAGTCTTTGCTGTGGCATTTTCCATTTGGAATAATCGCTGACAGGACTTTCAAAACAGTGGAAGAGAAAAAAAGAAAAAAAAAATGGAAGAAATTTCTTCGCTCAAGCAAAGACTTGAACACCAAATTTAATTTAATAATTAAATACAAATTTTCTTGCCGCAC

Coding sequence (CDS)

ATGAAAGATTTTTATCCCCCAAAAATTAATTTATTAACTTCATTCCATACCGATATTATCCCTCCAATTAGCTTTTCTTTTTCTTATGATAATAGACTGACAGTGGCAATAGTTGTGCAATGGGATAATCCTCTGCAGATATTCTCAATTGCTGTTACATGTGGGAATACCTTTATTTTGAAGCCTTCAGAAAAAGATCGAGGATGTTGTTAA

Protein sequence

MKDFYPPKINLLTSFHTDIIPPISFSFSYDNRLTVAIVVQWDNPLQIFSIAVTCGNTFILKPSEKDRGCC
Homology
[Close]
BLAST of CmaCh19G004870 vs. TAIR10
Match: AT2G14170.1 (AT2G14170.1 aldehyde dehydrogenase 6B2)

HSP 1 Score: 47.8 bits (112), Expect = 3.3e-06
Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 1 

Query: 44  PLQIFSIAVTCGNTFILKPSEKDRG 69
           PL +F +AVTCGNTFILKPSEKD G
Sbjct: 266 PLWMFPVAVTCGNTFILKPSEKDPG 290

The following BLAST results are available for this feature:
BLAST of CmaCh19G004870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh19G004870 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh19G004870 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G14170.13.3e-0680.00 aldehyde dehydrogenase 6B2[more]
BLAST of CmaCh19G004870 vs. NCBI nr
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016162Ald_DH_N
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G004870.1CmaCh19G004870.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016162Aldehyde dehydrogenase N-terminal domainGENE3DG3DSA:3.40.605.10coord: 35..70
score: 1.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G004870Watermelon (97103) v2cmawmbB524
CmaCh19G004870Watermelon (97103) v2cmawmbB550
CmaCh19G004870Watermelon (97103) v2cmawmbB555
CmaCh19G004870Wax gourdcmawgoB0634
CmaCh19G004870Wax gourdcmawgoB0642
CmaCh19G004870Cucurbita maxima (Rimu)cmacmaB149
CmaCh19G004870Cucurbita maxima (Rimu)cmacmaB342
CmaCh19G004870Cucumber (Gy14) v1cgycmaB0624
CmaCh19G004870Cucurbita moschata (Rifu)cmacmoB494
CmaCh19G004870Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G004870Cucurbita moschata (Rifu)cmacmoB530
CmaCh19G004870Wild cucumber (PI 183967)cmacpiB534
CmaCh19G004870Cucumber (Chinese Long) v2cmacuB528
CmaCh19G004870Melon (DHL92) v3.5.1cmameB463
CmaCh19G004870Watermelon (Charleston Gray)cmawcgB442
CmaCh19G004870Watermelon (Charleston Gray)cmawcgB447
CmaCh19G004870Watermelon (Charleston Gray)cmawcgB454
CmaCh19G004870Watermelon (97103) v1cmawmB473
CmaCh19G004870Watermelon (97103) v1cmawmB478
CmaCh19G004870Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G004870Cucurbita pepo (Zucchini)cmacpeB539
CmaCh19G004870Bottle gourd (USVL1VR-Ls)cmalsiB483
CmaCh19G004870Bottle gourd (USVL1VR-Ls)cmalsiB484
CmaCh19G004870Cucumber (Gy14) v2cgybcmaB945
CmaCh19G004870Melon (DHL92) v3.6.1cmamedB535
CmaCh19G004870Melon (DHL92) v3.6.1cmamedB562
CmaCh19G004870Silver-seed gourdcarcmaB0401
CmaCh19G004870Silver-seed gourdcarcmaB0528
CmaCh19G004870Silver-seed gourdcarcmaB1026
CmaCh19G004870Cucumber (Chinese Long) v3cmacucB0639