CmaCh19G004260 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G004260
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPhotosystem II CP47 reaction center protein
LocationCma_Chr19 : 5207684 .. 5211656 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTTGTCCTTTGGCCCGCGGTCGTTTATCTATACTAGAAATTTCAATAAATAAAAAAACAATTCATTAAATTTTCAATTTATCGAACTAACTTTTCATTGATGTATTGTTTCATCGAGATCAAATTGCAATTGCGATGTCATTTTCTTGTTCCCGAATGGTCTTCTTCAATTCTTTTAGGTTTATGCTCTACTCCGAGTAAAGATCTGCCCGATTTGGATTTGCACATATAGGACAAATGCCCCAATAGCATGTCTTTTTGCTACGACTTCTTTTTTTTTTTTCAATTTACTTCATGCTTGTAAACAAATATTCAACCAACGTATTCATCATATTACTCCATTAATTAACAGTTTTCTATCAATCCTATTTATAAATAGAATATGATACAAGTAGTAATCATAGAATAGATAGATTCCAAATTTCCAAATTGGGTTTTTTCTAAGCGGAGCCTGGATACTTCATTTTATTAGTACAACCGAGAAAACCATAAATTATTCTAATTGATAATATTAATCTGGATACCCCCCAAAAAATAGATCTAATTCCACTTCACGCTCCAAATTTTTGATAATGAAATCAATAATGAAATCAATCCGTCTTGGGCGAAAGAGAGGATACCTCGATCGGGGAAGAGAACGGGGAAATACCATATGACCCAATATATCTGACAAGTCGCACTATAGGTCAACCCACGATGCATCTTCATCTCCAGGACTTCGAAAAGGGACTTTTGGAATACCAACAGGCATTAAAGCAAACAAAAAAGAATTAAGTACTATAGCTCACTTTGATGTGGAAGCGTAACAACGGGTTTATTGTCTTAATAAATAAGATCGGCCTTTCTTTATCATATTTTATCTTTTAGCATATTTTATACATAGATTGAATAAGTTCATAAAAAAGGAAAACAGAAGGAATAAAGGAAAATTCTTCCGAATAGGTTTTTGAATGATGAACAAATATGTATACATTCACTCATAAAAAATAGGATCAATTCCCATCCACCATTGCGTATTGGTACTTATCGAGTATAGAATAGATCTGCTTCTTTTTGTTCCTACGAATAGAATAGAATTGTTCCATTATTACTAAAAGAATAGACCAAATATTAATCCTTTCGCCAAGATAATCCCCTCACCTCAAAGGGGGAGGTCCATAGCATAGTTTTTTTCAGTGCAATAAAGTTACATAGTGTCTATTTTTCGTTGATAAAGGGGTATTTCCATGGGTTTGCCTTGGTATCGTGTTCATACGGTTGTATTGAATGATCCCGGTCGTTTGCTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAAGGTATGTTCGTTATACCCTTCATGACTCGTTTAGGAATAACCAATTAGCAATTCCATTTAGATAAATTAGATAAAGTAAGGGCTCAAAAGAAGAGATATCTCCAATCCTAATAGGCCGGAGCACATATTGTGTTTTCTGGATTGTGCTTCTTAGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGAAATATTTTGTGATGAACGTACAGGAAAACCTTCTTTGGATTTGCCGAAGATTTTTGGAATTCATTTATTTCTCTCAGGGTTGGGTTGCTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTATGGTCCGGGAATATGGGTATCCGATCCTTATGGATTAACCGGAAGGGTACAAGCTGTAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTCCGGGCGGAATAGCCTCTCATCATATTGCAGCAGGTACATTGGGCATATTAGCGGGCCTATTCCATCTTAGTGTTCGTCCGCCCCAACGTCTATACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGTAAAATAGCTCCATTGAGTCCCGTATCGCTTATAGAACAAATTCCTATAATTATGAAACCCATATGAGAGACGGAGGAATAAGCGATTCTTTTTTTTAAATTGCGTTGACCCGAAGATGTTGAAGCTGCATAGATTATTTGAATTATGCCTACTATGATCAACCAGGGTGAAAAAATAGAATGGGCGTGGGGTAATAATTCCATATTGATCCGAACCAATCCATATGCTCCCATTTTTAATAAGATTCCGGCTAGAAGCATACAAGTACTGTAATGTGCCTCTCCGTGGGTATCTGGTAACCATGTATGTAAGGGTATAATCGGTGATTTGACAGCAAAAGCAATAAGAAATCCGATATAGAATATTATTTCCAGTGCTATAGGATACGATTGA

mRNA sequence

ATGAGTTTTGTCCTTTGGCCCGCGGTTTATGCTCTACTCCGAGTAAAGATCTGCCCGATTTGGATTTGCACATATAGGACAAATGCCCCAATAGCATGTCTTTTTGCTACGACTTCTTTTTTTTTTTTCAATTTACTTCATGCTTGTAAACAAATATTCAACCAACGACTTCGAAAAGGGACTTTTGGAATACCAACAGGCATTAAAGCAAACAAAAAAGAATTAAGTACTATAGCTCACTTTGATGTGGAAGCATTGAATAAGTTCATAAAAAAGGAAAACAGAAGGAATAAAGGAAAATTCTTCCGAATAGGGTTGGGTTGCTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTATGGTCCGGGAATATGGGTATCCGATCCTTATGGATTAACCGGAAGGGTACAAGCTGTAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTCCGGGCGGAATAGCCTCTCATCATATTGCAGCAGGATACGATTGA

Coding sequence (CDS)

ATGAGTTTTGTCCTTTGGCCCGCGGTTTATGCTCTACTCCGAGTAAAGATCTGCCCGATTTGGATTTGCACATATAGGACAAATGCCCCAATAGCATGTCTTTTTGCTACGACTTCTTTTTTTTTTTTCAATTTACTTCATGCTTGTAAACAAATATTCAACCAACGACTTCGAAAAGGGACTTTTGGAATACCAACAGGCATTAAAGCAAACAAAAAAGAATTAAGTACTATAGCTCACTTTGATGTGGAAGCATTGAATAAGTTCATAAAAAAGGAAAACAGAAGGAATAAAGGAAAATTCTTCCGAATAGGGTTGGGTTGCTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTATGGTCCGGGAATATGGGTATCCGATCCTTATGGATTAACCGGAAGGGTACAAGCTGTAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTCCGGGCGGAATAGCCTCTCATCATATTGCAGCAGGATACGATTGA

Protein sequence

MSFVLWPAVYALLRVKICPIWICTYRTNAPIACLFATTSFFFFNLLHACKQIFNQRLRKGTFGIPTGIKANKKELSTIAHFDVEALNKFIKKENRRNKGKFFRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGYD
Homology
[Close]
BLAST of CmaCh19G004260 vs. Swiss-Prot
Match: PSBB_CUCSA (Photosystem II CP47 reaction center protein OS=Cucumis sativus GN=psbB PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.0e-31
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. Swiss-Prot
Match: PSBB_MORIN (Photosystem II CP47 reaction center protein OS=Morus indica GN=psbB PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.3e-30
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 1 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  G+ CFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGVACFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. Swiss-Prot
Match: PSBB_LOTJA (Photosystem II CP47 reaction center protein OS=Lotus japonicus GN=psbB PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.6e-30
Identity = 58/63 (92.06%), Postives = 59/63 (93.65%), Query Frame = 1 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GL CFGFGAFHVTGLYGPGIWVSDPYGLTGRVQ VNPAWGVEGFDPFVPGG+ASHHI
Sbjct: 144 FLAGLACFGFGAFHVTGLYGPGIWVSDPYGLTGRVQPVNPAWGVEGFDPFVPGGVASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. Swiss-Prot
Match: PSBB_DAUCA (Photosystem II CP47 reaction center protein OS=Daucus carota GN=psbB PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.6e-30
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 1 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GL CFGFGAFHVTGLYGPGIWVSDPYGLTG+VQ+VNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLAGLACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. Swiss-Prot
Match: PSBB_CICAR (Photosystem II CP47 reaction center protein OS=Cicer arietinum GN=psbB PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.3e-30
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 1 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  G+GCFGFGAFHVTGL+GPGIWVSDPYGLTGRVQ+VNPAWGV+GFDPFVPGGIASHHI
Sbjct: 144 FLAGVGCFGFGAFHVTGLFGPGIWVSDPYGLTGRVQSVNPAWGVDGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. TrEMBL
Match: X2F2N4_LAGSI (Photosystem II CP47 reaction center protein OS=Lagenaria siceraria GN=psbB PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.3e-29
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. TrEMBL
Match: G3ETS3_CUCME (Photosystem II CP47 reaction center protein OS=Cucumis melo subsp. melo GN=psbB PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.3e-29
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. TrEMBL
Match: A0A0S2IFC4_9ROSI (Photosystem II CP47 reaction center protein OS=Cucurbita lundelliana GN=psbB PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.3e-29
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. TrEMBL
Match: A0A0S2IHI2_CUCPE (Photosystem II CP47 reaction center protein OS=Cucurbita pepo var. ozarkana GN=psbB PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.3e-29
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. TrEMBL
Match: A0A0S2IHD7_9ROSI (Photosystem II CP47 reaction center protein OS=Cucurbita pedatifolia GN=psbB PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.3e-29
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. TAIR10
Match: ATCG00680.1 (ATCG00680.1 photosystem II reaction center protein B)

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-30
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 1 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  G+ CFGFGAFHVTGLYGPGIWVSDPYGLTG+VQ VNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGVACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQPVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. NCBI nr
Match: gi|590000440|ref|YP_009004069.1| (photosystem II CP47 chlorophyll apoprotein [Cucumis hystrix])

HSP 1 Score: 136.3 bits (342), Expect = 4.7e-29
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. NCBI nr
Match: gi|952954488|gb|ALO21850.1| (PsbB (plastid) [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.3 bits (342), Expect = 4.7e-29
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. NCBI nr
Match: gi|68164830|ref|YP_247626.1| (photosystem II 47 kDa protein [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 4.7e-29
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. NCBI nr
Match: gi|595645224|gb|AHM88687.1| (photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 136.3 bits (342), Expect = 4.7e-29
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. NCBI nr
Match: gi|346578217|ref|YP_004841809.1| (photosystem II CP47 chlorophyll apoprotein [Cucumis melo subsp. melo])

HSP 1 Score: 136.3 bits (342), Expect = 4.7e-29
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

The following BLAST results are available for this feature:
BLAST of CmaCh19G004260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSBB_CUCSA3.0e-3196.83Photosystem II CP47 reaction center protein OS=Cucumis sativus GN=psbB PE=3 SV=1[more]
PSBB_MORIN3.3e-3093.65Photosystem II CP47 reaction center protein OS=Morus indica GN=psbB PE=3 SV=1[more]
PSBB_LOTJA5.6e-3092.06Photosystem II CP47 reaction center protein OS=Lotus japonicus GN=psbB PE=3 SV=1[more]
PSBB_DAUCA5.6e-3092.06Photosystem II CP47 reaction center protein OS=Daucus carota GN=psbB PE=3 SV=1[more]
PSBB_CICAR7.3e-3090.48Photosystem II CP47 reaction center protein OS=Cicer arietinum GN=psbB PE=3 SV=1[more]
BLAST of CmaCh19G004260 vs. TrEMBL
Match NameE-valueIdentityDescription
X2F2N4_LAGSI3.3e-2996.83Photosystem II CP47 reaction center protein OS=Lagenaria siceraria GN=psbB PE=3 ... [more]
G3ETS3_CUCME3.3e-2996.83Photosystem II CP47 reaction center protein OS=Cucumis melo subsp. melo GN=psbB ... [more]
A0A0S2IFC4_9ROSI3.3e-2996.83Photosystem II CP47 reaction center protein OS=Cucurbita lundelliana GN=psbB PE=... [more]
A0A0S2IHI2_CUCPE3.3e-2996.83Photosystem II CP47 reaction center protein OS=Cucurbita pepo var. ozarkana GN=p... [more]
A0A0S2IHD7_9ROSI3.3e-2996.83Photosystem II CP47 reaction center protein OS=Cucurbita pedatifolia GN=psbB PE=... [more]
BLAST of CmaCh19G004260 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00680.11.6e-3090.48ATCG00680.1 photosystem II reaction center protein B[more]
BLAST of CmaCh19G004260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|590000440|ref|YP_009004069.1|4.7e-2996.83photosystem II CP47 chlorophyll apoprotein [Cucumis hystrix][more]
gi|952954488|gb|ALO21850.1|4.7e-2996.83PsbB (plastid) [Cucurbita argyrosperma subsp. sororia][more]
gi|68164830|ref|YP_247626.1|4.7e-2996.83photosystem II 47 kDa protein [Cucumis sativus][more]
gi|595645224|gb|AHM88687.1|4.7e-2996.83photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria][more]
gi|346578217|ref|YP_004841809.1|4.7e-2996.83photosystem II CP47 chlorophyll apoprotein [Cucumis melo subsp. melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000932PS_antenna-like
Vocabulary: Biological Process
TermDefinition
GO:0019684photosynthesis, light reaction
GO:0009767photosynthetic electron transport chain
Vocabulary: Cellular Component
TermDefinition
GO:0009521photosystem
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016168chlorophyll binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0009767 photosynthetic electron transport chain
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
cellular_component GO:0009521 photosystem
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G004260.1CmaCh19G004260.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 102..164
score: 7.3
IPR000932Photosystem antenna protein-likeunknownSSF161077Photosystem II antenna protein-likecoord: 102..165
score: 1.12
NoneNo IPR availablePANTHERPTHR33180FAMILY NOT NAMEDcoord: 102..164
score: 7.1
NoneNo IPR availablePANTHERPTHR33180:SF8SUBFAMILY NOT NAMEDcoord: 102..164
score: 7.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G004260Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G004260Bottle gourd (USVL1VR-Ls)cmalsiB488
CmaCh19G004260Cucumber (Gy14) v2cgybcmaB385
CmaCh19G004260Melon (DHL92) v3.6.1cmamedB544
CmaCh19G004260Silver-seed gourdcarcmaB0294
CmaCh19G004260Cucumber (Chinese Long) v3cmacucB0625
CmaCh19G004260Cucurbita maxima (Rimu)cmacmaB149
CmaCh19G004260Cucumber (Gy14) v1cgycmaB0869
CmaCh19G004260Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G004260Cucumber (Chinese Long) v2cmacuB517
CmaCh19G004260Melon (DHL92) v3.5.1cmameB469