CmaCh19G004150 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G004150
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr19 : 4996715 .. 4997289 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAGTAATTGTCAAATATGATTTGTCACTCCTTCTGCCGATGAACTTCTGCTCTGTGTTTTCAATCCGAGGGGAATGGTGAGATGAACCAGTATTTTTTTTTTCAATTTTTTCATGCTTGACCTACTTTTTTTTCTCTTTGATTTTTTATGGCTATCTTTCTATATCTTTTAGTTTTAATAATGGTGGCCATAAATCATTTTGAACCCTATTTTCTTTTATTTGGCTTTATAGGTGTTGGAATCACCGTCCAAACTGTGTCTTTTGAGCTTAATTTGCGGAAGGGTTTGGATTGATGAGGCTTCTAGTGAGTGGAGTCTAAGTGGGTTGCTTTGATTTTGTGTTATGGCTATGATTGAGGAGGGAAAATTGTAATGGAGGAGAGTGGGGTTAAAAAGAGCTAAGGAATTGGTCACATTGTGCCTGAAAATGAGACGTTTGGCTATTTGATTGAAGAACATGAACGTGAGAGTAGCTCGAGCTCTAATTTTCTTACATCGAAGACCACAGGGCTTGAGAAGTACAGTCACAGTGGCTCTGAGGACTCATCTTCCCCTTCTTCATTGAGTTAG

mRNA sequence

ATGTCTAGTGTTGGAATCACCGTCCAAACTGTGTCTTTTGAGCTTAATTTGCGGAAGGGAATTGGTCACATTGTGCCTGAAAATGAGACGTTTGGCTATTTGATTGAAGAACATGAACGTGAGAGTAGCTCGAGCTCTAATTTTCTTACATCGAAGACCACAGGGCTTGAGAAGTACAGTCACAGTGGCTCTGAGGACTCATCTTCCCCTTCTTCATTGAGTTAG

Coding sequence (CDS)

ATGTCTAGTGTTGGAATCACCGTCCAAACTGTGTCTTTTGAGCTTAATTTGCGGAAGGGAATTGGTCACATTGTGCCTGAAAATGAGACGTTTGGCTATTTGATTGAAGAACATGAACGTGAGAGTAGCTCGAGCTCTAATTTTCTTACATCGAAGACCACAGGGCTTGAGAAGTACAGTCACAGTGGCTCTGAGGACTCATCTTCCCCTTCTTCATTGAGTTAG

Protein sequence

MSSVGITVQTVSFELNLRKGIGHIVPENETFGYLIEEHERESSSSSNFLTSKTTGLEKYSHSGSEDSSSPSSLS
Homology
[Close]
BLAST of CmaCh19G004150 vs. TrEMBL
Match: A0A0A0KXQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G303120 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-12
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 1 

Query: 21 IGHIVPENETFGYLIEEHERESSSSSNFLTSKTTGLEKYSHSGSEDSSSPSSLS 75
          IGHIV ENET G+LIEEH RESSSSS+FLTS+TTGLE++SHSGSEDSS PSS S
Sbjct: 12 IGHIVLENETLGHLIEEHGRESSSSSDFLTSETTGLEEHSHSGSEDSSPPSSSS 65

[Close]
BLAST of CmaCh19G004150 vs. NCBI nr
Match: gi|659069194|ref|XP_008448594.1| (PREDICTED: rop guanine nucleotide exchange factor 7-like [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 4.7e-13
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 1 

Query: 21 IGHIVPENETFGYLIEEHERESSSSSNFLTSKTTGLEKYSHSGSEDSSSPSSLS 75
          IGHIV ENET G+LIEEH RESSSSS+FLTS+TTGLE++SHSGSEDSSSPSS S
Sbjct: 12 IGHIVLENETLGHLIEEHGRESSSSSDFLTSETTGLEEHSHSGSEDSSSPSSSS 65

[Close]
BLAST of CmaCh19G004150 vs. NCBI nr
Match: gi|449460361|ref|XP_004147914.1| (PREDICTED: rop guanine nucleotide exchange factor 7 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-12
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 1 

Query: 21 IGHIVPENETFGYLIEEHERESSSSSNFLTSKTTGLEKYSHSGSEDSSSPSSLS 75
          IGHIV ENET G+LIEEH RESSSSS+FLTS+TTGLE++SHSGSEDSS PSS S
Sbjct: 12 IGHIVLENETLGHLIEEHGRESSSSSDFLTSETTGLEEHSHSGSEDSSPPSSSS 65

The following BLAST results are available for this feature:
BLAST of CmaCh19G004150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh19G004150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXQ7_CUCSA1.2e-1281.48Uncharacterized protein OS=Cucumis sativus GN=Csa_4G303120 PE=4 SV=1[more]
BLAST of CmaCh19G004150 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh19G004150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069194|ref|XP_008448594.1|4.7e-1383.33PREDICTED: rop guanine nucleotide exchange factor 7-like [Cucumis melo][more]
gi|449460361|ref|XP_004147914.1|1.8e-1281.48PREDICTED: rop guanine nucleotide exchange factor 7 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G004150.1CmaCh19G004150.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 73..74
scor

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G004150Silver-seed gourdcarcmaB0294
CmaCh19G004150Silver-seed gourdcarcmaB0997
CmaCh19G004150Cucumber (Chinese Long) v3cmacucB0616
CmaCh19G004150Cucumber (Chinese Long) v3cmacucB0625
CmaCh19G004150Watermelon (97103) v2cmawmbB549
CmaCh19G004150Wax gourdcmawgoB0646
CmaCh19G004150Cucurbita maxima (Rimu)cmacmaB455
CmaCh19G004150Cucumber (Gy14) v1cgycmaB0868
CmaCh19G004150Cucumber (Gy14) v1cgycmaB0869
CmaCh19G004150Cucurbita moschata (Rifu)cmacmoB527
CmaCh19G004150Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G004150Wild cucumber (PI 183967)cmacpiB518
CmaCh19G004150Cucumber (Chinese Long) v2cmacuB511
CmaCh19G004150Cucumber (Chinese Long) v2cmacuB517
CmaCh19G004150Melon (DHL92) v3.5.1cmameB469
CmaCh19G004150Melon (DHL92) v3.5.1cmameB473
CmaCh19G004150Watermelon (Charleston Gray)cmawcgB440
CmaCh19G004150Watermelon (97103) v1cmawmB472
CmaCh19G004150Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G004150Cucurbita pepo (Zucchini)cmacpeB548
CmaCh19G004150Bottle gourd (USVL1VR-Ls)cmalsiB490
CmaCh19G004150Cucumber (Gy14) v2cgybcmaB377
CmaCh19G004150Cucumber (Gy14) v2cgybcmaB385
CmaCh19G004150Melon (DHL92) v3.6.1cmamedB544
CmaCh19G004150Melon (DHL92) v3.6.1cmamedB547