CmaCh19G003610 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G003610
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Polygalacturonase
Location	Cma_Chr19 : 3919886 .. 3941362 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTACTGACCACGGTGAAGGCTCGAGTGAACAACTTTGGCAAAGCCAGTGCTCTTATCCAGCACGAATTGCGTCCAATGTCGTTCCTCACCGTATCTGCGGATGTAGACACCCAAGCGATTGATAAGAGTGCTAAAGTTGGACTAGGTTTGGCCATTGAGTCATGATAGAATGATTTTACTCGCTATGGCAAGTAGAATTAAGGTAGAGTTTTCTGGTATATAGCCCCAAGTTGTTTGTTGAGACCTTGTTTATATGTGTTGAAGTCTTACTCGTTGTTTTGGATTGTAGAAATAAATATTAAGACATGAATTGAGCAGCTCTGTTCAATAAAGACATGAATAATCGTTAGTTCGTCCTATCACGCTAATTCAACTAAAGGAGGATCGTAAATTGTGATTCAACCTCCTAGACATGTATATTTCTATCCTAACTACCTGATCACAAAATATCAAAAACATTCCCAAGTAAATTCCTAAAATCAAATTGACTATTTACCTGCTTGAAAAAGTTCCGTTTTAGCCCTTCCTCAAGCTTAAATCTCTTCAAATATCATAATTAGGTCAAAATTCATGTTAAAAAAAAAGAAAAAAAAGAGAAATTAGTAAAAAGTATTAAAAACAACATATAGGTAAGCGATTCTCATGATAGGAATTGACTTGACATGTTTTATATTTTGTGATCAGGTTGTTAGGATAGAAATATACATGTCTAGGACCTTGAATCACAATTTACAATCTTCCTTTGGTTAAAATTGAACAAAAACATTATCGAGTTTAAAGGATGGGGTTTAGATCAACCATTAATGGTTAGTTCAGGTGAACCAACCACATGATCATCTTCTACCTTGTGACCATTCCGACATGCGTGTGGTGAAGGCTTAGATAGTCCGATATCACCCTCGATGAGTATATTCTAGGCCTCGATTGAAATTGGTTCCTTCACCAAACTTCAAGATATCTTGAACTTGAACATGTAGGTACCAATCTCAGCAATTAACATTAACTAAGAAAAGAGAAATTGAGGCTCAAAATCATGGGGTTAACCAAACTTATCCAAAACTTCGGTGACAAGAAACTTTTTTCCATTTGCACGTTCTAGCCCTCAGTTGACTATTGATTTCACCCTCTTTGCTATTAACACAAAGAGCCCAAAATTATACCTTATTATGAAGAAATGAGAGGAAAGTTTTAGGATTAAACTCTCTTTTTTTGGATCCCAAAACCGACATTTGAAATTCAAATTTGATCAATCAATCCACTGTGTTTAAATTCCAAGTTCTTTATGAAAATGTTGCAATCACCATAAAGCTTAAGATCAAGAGTTTGTCAATTTCAATGATGAGAGTATTTCATGAAGGAAAGGTTCACGTCTTACTAAAGAGTTCATTTCTTCGTTCCTAAGATTGAGCCCATAAGTTCCAAATTTAACTCTAAAGAAGTCTTGTCCAATGGGGAATGATTAAAAAAAGCCCTAAAAATAACAAGAAGAATATTGGTAGATGGCCACAGTCTCAAAGGAAAGTTATTGACAAAAAAGTGGGTCTTAAGTTCGAGTTCACTTGCAAATAAATAAGTCTACCCTAGTTTGCGTAAGTATGAACTATTTTCAAAATAGCAAGATTGAAACATGACAATATATCATACGGGCTTGATCATTGGTTCATAATGCGAGATCCATATAGAGGTTTGCGGTGGCTTTTGGACTGTCCTCCTATGGAAGTTATTTGAACGGGTCAATATTAAGCTGAACTCTTAAAATGATAAACTATGGTATCTAAAATAATGGGTAGATTTATTAAGATTGTTAATGATGTGGTTGAGCAAACTAATAGTTACTTAAACAACTATAGAAATAAGAGTTATTCTAGTATAATATTTCATTGACATTGTCTCGTTTAGTGGGAATACTTAGACCTACTCCACATACCGCAATTGTTTTAAATCACTAAATACTATACCATAGGAAAAAGTTTATTGGGTTTGAATTTTTGTCAAAGTTGTTCTATTTTTATGGTGAAATTGGTAAATTATTTAAAGCCCTCTAGAGCATTTTTATTATCCTTTAATCTTAGTACCAACCGGTTTTGCCAAAAATTAGATTTGTCTACTAAGCATCCATAAGGTTCAACTACAATAGAGGTAGTTCCTTCGGCATTTTTACATGAAGCTTTAGCGATGTGATTTACACTATTAACTTTTTCAAATGATATCGCTATTCTATTATCTATCTAACCATCTCTCCATTATTTGCCTTTCTTCTTCCCAGCAAATCTTTTCTTTCTTTTTCTTTTTTCTGTTTTGTTTGCAAAATTATTGATGGTAGGGTGGGTAGGGTGGATAGGGTGGAGAGATTAAAGAAGAGGTGGTAAAATTTTCTTTTCTTCTTTATTTTACTACTACTACTTGTTGCGTAAGGTTTTTACTTCTGTAGCTAAGATTTTTACTGGTTTTTCCTCGTAGCTCAGATCTTTATTGAGTTGGAGTGGTTCGTAGTCTATTACGTGGATAGGGTCCGTAATGTACTTCCTTAGCATCAACAAATGAAATACATCGTGTACTCCTGAGTGGGCTGGAGGTAGGGCTAACTCATACCCTACTGGACCAACTCGCTCTAGGATCTCGAATGGTCCAATGAATTTAGGACTTAACTTGCCCTTACGTTCGAACCTCAAGACTTTCATAGGTGCTACCTTTGAGGAATACTGGGTCCCCTATCTCAAACTTCAGGCTTCTACGCATTACATCGGCGTAGCTTTTCTGTTTACTTTGAGCGGTACGCATCCTATCTCGATTTTTCTGGACAGCCTCATTGGTGAGTCGAACCAGCTCGGGTCCTACTAACTATCTCTCACCTACTTCGTCCCAGCATAGTGGGGACCTACACCGTTTTTCGTACAGGGCCTCAAACGGTGTCATTCCGATAGTTGCTTGGAAGCTGTTATTATACAACTAACTTCCCTTAAAATCTAGTAGGCAAGCGCGTAACATGTTCTCTAGAATTTGGTTTAAATGCTCCATTTGTCCATCAGTTTGGGGGTTGAAGGCGGTACTAAAGTCGAGGCGGGTACCCAGTGCTTTCTGAAGTCCGCGCCAGAACGCTGACGTAAAGTTCTTAGACTCGTGTGGTCGGTAAAAATTTGAGTTTTATCTGTATAGGTAGTGTTGCCAAATTTTCAGTACGAACACTCCAGCGGCCAACTACAGGTCGTGGGTAGGGTAATTCTTTTCATATTCTCTTAGTTGACGGGACACGTGTGCAAAAACTTTACCGTGTTGCATTAACACACATCCTAGTTCCTTCTTGGACATGTCACTATAGATTACATACCCTTATGATCTCTTGGGTACTGTGAGTATCGGGGCGGTTACCAATCTCTCTTTTAAGTTATAGAAGCTTTCCTCACAAGCATCATTCCATATAAATGGTACCCCTTTCGTCATTAACTGTGTCAAAGGCGAGGCTATTCTAGGGAAGTCTTGCATGAACCTTCGATAGTATCCCGCTAGTCCCAAGAAACTCTGTATTGATGATATCGTAGTTGGTCATTCCTACTTTGTCACCGCTTTGACCTTAGTAGGATCTACGGATAATCCGTCCTTTGTCACCATGTATCATACGAAAGAGACTTGTCATAACCAAAATTCGCACTTTGAGATCTTGGCGTACAACTTGTTCTCTCTTAGGGTGGCTAAGACTTTTTAGAGGTGTTCCTACTGTTCTAGGTTTATTTTTTAGTATACTAGGATGTCATCAATGAGCACGATCACAAAAGTGTCTAGACAGTCCTTGAACACTCGGTTCATTAACTCCACTAACACAGCTGGAGCATCGGAGAGGCCAAATGACATCACCACAAACTTTGGTACATCTTTTTCTTTACTCTTTATTTAATGGTAACCTAACCCCAAATCTATCCTAGAAAATATCGTCGCCTCTCTGAGTTGATCGAATAAGTCTTCTATTCTAGGCAGAGGGTATTTGTTCTTTATGGTTCTCTTATTTAACTCTCTGTAATCGATGCACAAACGCATCGATCCATCTTTCTTCTAAACAAACAACACTGGCGAAACCCTAGGGGAATATGCTAGGTCGAATGAACCCTTTATCCCGTAAGTCTTGTAATTGCGCCTTGAGTTCCTTCAACTCTGCTAGCACCATGCAATAGGGTGCTTTAGAAATAGGCCCAGTTTTTGGCTCGAGTTCGATGATGAAGTCGACCGCTCGAGAAGGGGTATTCCAGGTAGGTCATCTGAAAACACATCTGGAAACTCGTTTACGATGGACACGTTTTCTAGGGTCTTTTCTTTTCCTTTTACGTCTACGACACATGCTAATATAGACCAACTACCTTGTTGGACTAGTCTCTTTGCTTTCATTATCGAGACTACCTTTGAGGTAGTCCCGGTACTTGTACATTTAAATTTAAAGCTAGGTTGAGGTAGTCCCGGTACTTGTACATTTAAATTTAAAGCTAGGTTGAGGTAGTCCCGGTACTTGTACATTTAAATTTAAAGCTAGGTCATACTGGTGGTGAGAATATCACTTTTTTTTCGTGACAGTCTATACTAGCACAATTTACAGCTAGTCAATCCATGCCTAGTATTACGTCGAAGTCGGTCATCTTTACTACTATTAGGACCGCGTAAAATTTGGTCGACTACTATTGCTTGGTCATTCTTTACTCTATCCTTAGTTACTATGTCCACCCTCTTAGGGCTGCTTGCCAACCATACATGCAGTAAGGGTTCTAATTCAAACCCTATCTCAGATCCCTCTCGAGGTGGGCTCTCTTCAGCCTCACCTCGTCCTCTACCTCTAATAGGAGGTCATCCCCTTCCTTGTCTTACATTTTCGCGTGGTCTAGGCAGCATGGTTCTAGAAACCAAGATAGCATCTCTTAAGTCTAAGGCTCATTACTTATGAAACTATGTTGTACATCACATATACTAAGTTCACATCACATTGCAAATAAAATCACTCTGCATGCAACACATCATATCATACTCTTAAATAAATACATGAAATTTCACAGCAATTTCAGTAACATTAACATAAAAATGCATGCGAGTTAAAAAACGTTTCTCTTTTCTCATCTTATGCAGGCGTACCTAACGGTAATGGGGCATCGACGTTGGGACCATGGAGCATGCCAAGCCTACATCGTAGGCTAGTCTACAGAAACTAAAACCTAGAGCCCTGATAACAACTGTAACGACCCTAAATTTCCACATATCTAGAGTCGCCACTAACGTCTCATGCTCATCTCTAATGCAGAATATAACTCTAAGAATGCTCATCTTTATTAGCGGAAAAATTTAAAACTTTAGAATACGTTAAAACATTAGAAAACACTGTGAGACTTACGTGTTTCAAACATCATGCTAGAGTCCAAAATAAGGTAAAAAAAAAATTACAAATTAAATAATTTAAATAAATGAAATGCAAACTCCCTATCCTAACCAAGACTAGGAATTTTAAATATGCAACTATCCTATACACGCACCACAGTCTTTGATCCCGATGCCGCCGTCAACCGTACATGGGCACCTTGCCTTTACCTAAAAAACAATATGGCACATGACCTGAGTATTTCAAAAGAAATACTTAGTATGTGATCCCACTATAGGGGCCATGCTAATGCAAACACATTCAATCATGAATTAGGGACCTATCTCTAATCACGTGCGAGTGTGAATCCTAGGGCCCTCGCACACCCCTTGGACTCTCTGGTTAAGCTAATCTGTAGCGACGTCTGGAGGTCAGCGAAACCCCATAGTATCATGCGGCTCATGAAAACCCTCATTTGTGCACACTCTTCATCAGTCATCATACGGTGCGCGTCTGCACTCATCATCTCTAGGGGAAGTAGCCCTATGCTTGTGAGCATACAATATGCATGAGGTTCTTCTAAGTCCAATTATACATTTCTTCTGACACAACCCTCTAGTCTCATCTCTTGATTACACTATGTAACATGTGCTCGTGGATATTTACATTAATATCATTTTCATAGAAGCTATTAAGTGCATCAGATATAACATGTACGTCATGCATCAAAACATAAATAACGTACATTTAACATACATCGCAACAAAACGTCATACTCATACATCTTCATAATTCAAACAATCTTTAGCCTAACCTATAGTAAGGCCACTTACTTGGTTGGCCATAGCCGAAGTACTCCCTAATTTATTTTCAACACATCATTATGGATAATGTGAAAAACTCGATCATAATTGATCAAAATTATTGTCCACATGAGAAAGACTGTCCTGGTCAGGTATAATTTCTCGTCAATTTCAAACAAGTTAATTTTTTTCTAATTGTATTTAACCTTAAATTTGAATAGAACTCAATATTTTAATTTTATAAATAATTGATTTATTCTCTTTTTAATTGTTTGAAATTTGTTAGGCTTAAAATGGGGGCTAAATTATTAGTATTATTTTTTGTTAAATTAAATTACTTTTGTGGGTAATAAATTGCGGACTCCACTACCCTTACATATCTTAAAATGGTATGAAGGTTTTAGGTGGTAAATTTTTTTTATAGATATTCTTGTTTATCAGTTTCCGTAGCATACGTTGATCGTTCTTCTTTATTCTAATAGGCTTCTGGAGTTAAAGTCAGCGAAGTAACATACGAAGACAACAAGAGAACTTCCGCCACTGAAATAGCAATCAATTTTGATTGTAGCTCAATAAATCATTGCACCGGATTAAGCATGAAAGACATAAACCTAACTTATGAGAATCACATCGCTAAAGCTTCATGTAAAAATGCCGAAGGAACTACCTCTGGTGTGGTTGAATCTTCTGCTTGCTTAGCAGAAAAATCTAATTTTTGGCAAAACGTGTTGGTACTATGATTAAAGGATAATAAAAATGCTCTAAAGGGCTTATAAATTATTTACCAATTCTACCATAAAAATCAAACAACTTTGACAAAAGCTGAAACCCAATAAACTTTTTGGTATGGTATGGTATTTAGTGATTTAAAACAATTGCAGTCGTGGAGTCGGTCTAAGTGTTCTCACTAGACGAGACAATGTCAATGAAATATTATACTAGAATAACTCTTATTGCTCTAGTTGTTAAATATTATACTCGAATAACTCTTATTCCTATAGTTGTTTAAGTAACTATTAGTTTGCTCAACCACATCATTAACAATCTTAACAAATCTACCCATTATTTTAGATACCGTAGTTTATCCTTTTAAGAGTTCAGCTTAATATTGACCCGTGCAAATAACTTCCATAGGAGGACAGTCCAAAAGCCACTGCAAACCTCTATATGGATCTCACATTATGAACCAATGATCGAGACCGTATGATATATTGTCATGTTTCCTTCTCGCTATTTTGAAAATAGTTCGTACTTAGGCAAACTAGGGTAGACTTATTTATTTGCAAGTGAACGCGAACTTAAAACCCACTTTGTTGTCAATAACTTCCCTTGGAGACTTTGTGGCCATCTACCACTATTTTTCTTTTTATTTTTAGGGCTTTTTTTAATCATTCGGCATTGGACAAGACTTCTCTAGAGTTGAATTTGGGACTTATGGGCTCAATCTTAGGAACGAAGAAATGAACTATTGAGTAAGACCTGAACCTTTCCTTCATGAAATACTCTCATCATTGAAATTGACAAACTCTTGATCTTAAGCTTTATGGTGATTGCAACATTTTCATAAAGGACTTAGAATTGAAACAGAGTAGATTGATTGATTAGATTTGAATTTCAAATGTCGGTTTTGAGACCCAAAAGAAGAGAGTTTAATCCTTAAATTTTCCCCTCATTTCTGGTTAATAAGGTATAATTCTGGGCTCTTAGCGTTTATAACAAAGAGGGTGAAATCATAGTGAACTGAGGGCTCGAACGTGCAAATGGAAAAAAGTTTTAGTCACCGAAGTTCGGGGTAAGTTTGGTTAACCCCATGATTTTGCGCCTCAATTTCTCTTTTCTTAGTTAATGTTAATTGCTGAGATTGGTACCGACATGTTCAAGTTCAAGATGTCTTGAAGTTTGGTGAAGGAACCAATTTCAATCGAGGCCTAGAATATGCTGATTGATGGTGATATCGTTCTATCTAAGTCTTCCCCACACGCATGTCGGAATGGTCACAAGGTAGAAGATGATCATGTGGTTGGTTCAACTTAACTAACCCTTAATGGTTGATCTAAACCCCATCTTTTAAACTCTTTAATATTTTTGTTCATTTTTAACCAAAGGAGGATCGTAAATTGTGATTCAAGGTCCTAGACCGGTATATTTCTATCCTAACAACGTGACCACAAAATATCAAACATGTTTAAGTCAATTCCTATCGCGAGGATCGCTTACATGTATGTTGTTTTTAATCCTTTTTACTGAGTCCCGCTGACCTCTTCGTTGGAAATGAACGTTTAACTAGCGTAGCGGAAGTATTAGAATCGTCCTTGATCTTACTTAGAATTAAATAAAACAAAATGTTAAACAAACTACGTTGAAGAAATATGGAGAAAGTTCTCGCAGATTTTTAATCTACGTGCTCCAACTTCTCCAATAGTTGAATCTCCTCCATAAAGTATTCATCGCTAGGAATTAAACACAAAGTCAAGCCTTGTGGTCGCTTCTCGAAAGAAAATCTGCAAAGACGGGAGAAGGAGATTTTTAGAGAGAATTCTGGAATGGAGAATGCGTGGGATGCTTTTTGGCTCAACCCTAGGGTCTTCTCTACCGCGATTTGAGAATATTTACCAAATAATATATTTGAATATCTAATATAGTAGGATATAACATATTCCTAGAATCATATTTAAATGCCATATGATATTCTAATATATATTTAACTAATTTAAATGTAGTTCAAATTTCAAATATATATTTTCATTCGATTATCCATATACATGGATTATTTTAATATTTAATATATAAAAAACAATAAATATATTTTTCTCTTATTTGAACCCATTAAATGAAATGTATTTTTATTTCTTTATATTTAATATATCTAATATATTAAATAGTAATTTAAACCCTCCAAACTATATATATTTTTCTCTTTTTGTATTTAATCTAAGTCATATGTTAAATATCAATTTGAACACTTGAAATTAAATACTTTTTCTTCTTTGAAATTTTCCTTCAACTAAATCGATCTTTTTAGTGTTACTATGAGCTAGCAAAGGAACCTTATGGTGACCTTATTGATTATAAGCTGCAATGATATAAAATTAATTAAATATATTCCTTAATTAATCAACTTGGTTCATTAACTATAAGCCACTCCATGGTAGACCTATTGTTGCACGCTTATAATATAGTGTAGATCAAGTTTTGACCTTTGATATAATCGTTACAAGCAATCATGCGTTGATTGTAATAGCTTATCCCTCAAGTGCCACTAACTCTCTCATGAACAATTTATTTATGATCAAACCATAAACCAAGTCTCTCCAGGGACGGTGAGAGAGTGTGACTCCATTGTTCAAGTCCCGAAATCATCACTTAAGGGAACTACTCATCTACTTATTCTATATCGGACGAAAAGAGTGAATTTCATCTCGTGAAATTATGTTCTCAGCTCCCTATTTGGTCAAGTTTCTAAAACATTAGACATATTAAATTTGCTATAAAAGTCATTCTCAACTCACTTAGGATTAAGATTGAGTCGCATATGGTCATCCTATAGAATATTAATTTTCTCGATTAATGAATTTGTAAAGGGAGCTAAAATATTTTCGTGGTCCAATCTTATACAAACTCTTTGCAGTATAAGATACACCCACTCACATGTGTGAACGTTTTAGATATAATCATTTGTAACAATTACTAACATAGTCGTATCAATTATGTTATGAGTATAAGAGACCAAACCTTATCCATATACTATAGGCCCTTTAAGTTGTTCTTAAACATGATCCTCTTGTATGTCAATCACATATTGTTTAAGAGTACATCAATGATCTAGGACTTTTCATACCATGGATAATGTTAAATTTTAAATAAAATAATCAAATTTATTATTAAAATTAAACAATTAATTACAAGGCTTTATGGGATAAATCTCAATACTCTCGATGTCCAAGATATTCTGACATTGTCCCCACTTTTTATTTTACCCTAGTTTACCTTAGTGGCCTAGATCATAGATTGTAGTATCATGGTATCCACTTATTCCGACGCTTGTTCTTAGCGAGCCTTTCCTTATAAGGAATTTGAGCACGCTCGGTCTCAGTCAAGGCTCTACCTACTCTACCACCTCGTCAAGTACTTATAAGGAATTTGAGCACGCTCGGTCTCAGTCAAGGCTCTACCTACTCTACCACCTCGTCAAGTATCCCTTCAGATTTTAGGGTACATAATCTATTCATCATGCAACAAAATCTAAGTTATTAGGTATTGTAACCAATTATAACCTAATTAGATCATAAGACGTAACTAACATATGCATATAATTCACATAAGGAGTGAGATCATGCGTATTAACCTCACAACTTACACACCTTGTCAAGGCGAGGTGAGTTTAAGTCAAGTTGCAAGGTGACACGGTCATGCTTGCCCAAGGCGCATTGCTTACGGTCGCGTGTCAGATGTTCCAATGATGCTTGTCCAGAATGTACTGTCCACGACCGCATGCCCGTTCTAACCCCTTTACTTGCTTTCATGTTAGATGGACATTTACTATTCTTGTTGTGTTAGTACGGGGGCATGACCTGTCAACAAAATCATGTCTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTAGAAGATTCTATGCGTTTCCTCGCTTCCATTTTCTAAAAAACTTTCTTTCAAACATGACCAAGGCTCGATCAAACGTCTGAATTGTCTACGACTTACAATTTTCATACTATAGACTTGTTCATCGGTTTAAAATATGATCCAGACCGTATAATATATTGTCATGTTTCCTTCTCACTATTTTTAAAATAGTTCATACTTACGCAAACTAGGGTAGACTTATTTATTTGCGAAGTGAACTCGAACTTAAGACCCACTTTGTTGTAATAACTTCCCTTTGAGACTTGTAGCCATCTACCAATATTCTTCTTGTTTTTTTTTTAAGGCTTCTTTTAATCATTCCGCATTGGACAAGACTTCTCTAGAGTTGAATTTGGGACTTATGGGCTCAATCTTAGGAACAAAGAAATGAACTATTAAGTAAGACATGAACCTTTCCTTGATGAAATACTCTCTTTATTGAAATTGTCTTGATCTTAAGCTTTATGGTGATTGCAACATTTTCATAAAGGACTTAGAATTGAAACACAGTGGATTGATTGATCAAATTTGAATTTCAAATGTCGGTTTTGAGACCCAAAAGAAGAGAGTTTAATCAAAGTTTCCCCTCATTTCTGGTTAATAAGGTATAATTCTGGGCTCTTAGCGTTCATAACAAAGAGGGTGAAATCATAGTGAACTGAGGGCTAGAACGTGCAAATGGAAAAAGTTTTAGTCACCGAAGTTCGGGGTAAGTTTGGTTAACCCCATGATTTTGAGCCTCAATTTCTCTTTTCTTAGTTAAAGTTAATTGCTGAGATTGGTACCGACATGTTCAAGTTCAAGTTAACCCCTTTCCTTATAAGGCTAGAATTAGATTACCTCTTATGATCGAAGATCTAGAAGCAAGATTTAAAAACCTTGTTCTAAATTGAGTCACTCCACAATCGAACTTGATCAAGGCTTGATTGAATGGCTCGGGTGCAATTCTACCACAAGAATTGCTTGAAACTTAGAAATGAAAAATATGATGCTCGAATTTGTAAGAGAAACGTCTCAATTTGAGATTTGAATTACATTCATCCATGAATCTGAATTTTATATAACATAGTGAGGGTATTTATACTCCCGACAAAAGACGTTTGTGGACGGGATTTATTCATCTCCACAAAAGAATAAGTCAAATTGACCATTTGACTTTTACATAATTTATGAAATTAAAAATAGTTATTTTTAACAAATGTTGATGTGTGGTTAATGCGATAAGTTTGAAATCAATTGAGCTCTCTGCGCTCGGAAAAATGTATCTTCACTCAATGGCTGCGTCACTCACAAACATATTAGAAGGAATAGAAAGCAATGGCTGCGTCACTCACAAACATATTAGAAGGAATAGAAAACAATGGCTGTGTCACTCACAAACTAATTAGAAGGAATAGAAAGCAATGGTTGTGTCACTCATAAACATATTAGAAGGAATAGAAAGCAATGGCTGCGTCACTCACAAACAAATTAGAAGGAATAGAAAGCAATGGCTGCGTCACTCACAAACAAATTAGAAGGAATAGAAAGCAATGGCTGCGTCACTCACAAACAAATTAGAAGGAATAGAAAGTAATGGCTGCGTCACTCACAAACATATTAGAAGGAATAGAAAGCAAATCAGGAGGCGTAAGTAGATTAAATCCTATTAAAGTAGATTAAATCCTGTTAAAGTAGATTAAATGTATCCAAACCCAGTCAGTCAATCCTTGTGCAATGTTTTCAAGAGGCGTAAGTAGATTAAATCCTGTTAATCCTTGAGAAAATGTATCCAAACCCAGTCCGTCAATTCTTGTACAATGTTTTGACCAAGTTTGCCTTACTTGTGGCTACGTCACTCACAAACATATTAGAAGGAATAGAAAGCAAATCAAGAGGCGTAAGTGGATTAAATTCATAAACAACTTCAAAAGGAGAACAATGAGTTGTACTATGAATTGCTCTATTCTATAAACAACTTCAAAAGGAGAACAATGAGTTGTACTATGAATTGCTCTATTATATGAAAACTCTACAAATGGCAAACATTCATCCCAAGACTTAATATTATATGCAAACTCTACCAAATGACAAACATTCATCACAAGACTTAATATTCTACAAATAGCCCTAAGCAATGCTCCTAATGTTCTATTAACCACCTCAGTTTGTCCATCCGTCTGAGGATGACATGTAGTTGAAAACAACAATTTGGTACCCAATTTACCTCACAATACTTTACAAAAGTGACTTAGAAATTTATCATCCTTATCACTAACAATTATTCTAGGGATTCCATGTAATCTTATTACTTCCTTAAAAAATAAGTCAGCAACATGTTTTGCATCGTCCGTCTTGTTACATACAATAAAATGAGTCATCTTACTAAATCTGTCTACCACAACAAAAATACTATCTTTACCGTTTTTAGTGTGCAGTAAACCAAGAACAAAATCCATAGATATATTACTCCAAGGTTCATTGGGTACATTCAAAGGAGTGTACAATCCATTTGGTTGTGATCTAGATTTAGCTTCTTTGCATTTAAAGCATTGACTACAAAACTTATGAACATCATGCTTCATTTTCGGCCAAAAGAAGTGATCATGCAACATATTATAAGTTTTATTAATCCCAAAATGTCCCATTAAGCCACCATCATGTGCTTCTTTTACAAGCAAATCTCTGATACAACATTTAGGAATGCAAAGCATACTTTTTTAAAATAATAATTCATGAAACACATAATAATCATCTACAACAGTTTTTGTAAGACAAGATGCATAAATAATTCCAAAGTCTTGATCATCTCGATATAATTCTTTAATATGCTCAAATCCAAGAATTTTTGCACTAAGAGAAGTAAAAAGATTGTACCTTCTAGATAATGCATTAGCTACCGCATTAAACTTACCTTGCTTATATTTGATGACATATGGAAATGTCTCAATAAACTCCACCCACTTTGCATGCCTACGGTTCAGTTTGTTTTAACTCTTAAGATACTTCAAGCTTTCATGATCAGAGTGGATCACAAATTCTCTAGGCCATAAGTAGTTACCACACCGTGATTTTGTTGATGACTCTACAATCAACGCACATGCGCCACATTTCATCTTTCTACGGAACAAATAAGACTGGTACAGAACATATATAGCACTTCTCCATGAGCTCCTCTACTTGTCTTTGAATTTCTTTAGTCTCAGTTGGGTTGGCTCTATAAGCTAAGCTGGCCTATTAGGAATGACTGCCCCTGGAATAAAGTCTATTTTATGTTCAATACCTAATGGGAGGTAGTCCTTTAGAGACTTCATCTTGGAATACGTCATCAAATTCCTGTAAAAGAGATTGAAACATACTAGGCAAAGACAAATTGTTATCGTTAGAGACCAAACATCCTTCCTTGTACACAAGTACAAAGATGATTTTTTGTGAGAACATTGCCCTTCTAACCTCTCCAACTCTAGCCAAACAACTCACATTTTTTCATTTTTTTTTTCAATTTCATTCTTTTTTTCACTGTGTTTTGTCTCGTTGACTTTTCTCTATTTTTTTCACTCGAACTCTGTTTTTTCTTTCAACTCTTTTTCCTCAAACTCTTTCTTTTTTTCTTCCAACTTTAATTGATCAGAAAATACATTTGCAGAACTCAAAGGTACTCGAGTGGTTTTTTTACCATCTTTTACAAAATAATACCTATTTAAATAGCCATCATACATAACCCTCTTGTTAAATTGCCATGGTCGGCCAAGCAATATGTCTCCAGCATGCATTGGTAAAACATCACAAAGAACTTCATCTTTATATTTTTCCAGAGTAAAAGATATTAAACCTTGAGAAGTTACCTTCATTGTTCCATTGTCATTGAGCCATTGAATCTTGTAAGGTTTATGATGGTGTTGGGTTGGAATTAGCAACCTTTTGATCCGCATGGTACTTACGACATTGGTGCAGCTTCTGCTATCAATTACAAGACTACAAAGAGTCCCCTTGACTAAACAACTTGTGTGAAATAGGTTATCTCTTTGATCATCAACATCGTTCTCTGTAACTTGAGTTTTAAGAAGTCTTCTAGTAACAAGTACCAAATGACTCCCATCTTCTAGTTCCTCCTCATTCTCCTAGATTTCTTTTTCAACTAGCTCATCAAGTGTCACTTTCCTCACTATCAGTGACAACTTGCCCATTCTTGATGATCATGACTCTCTTGTTATGACAATCACGACTAAGATGATCAATTCCTTAACATTTCCAACATTTGATATCTCTATTTCTTTCTCGAATTTCCTTGTATTCCTCTGCTTTTTCTTTACCCTTGGAGGTCTCAGCTTTGTTCTTTTTGTCAAGATCATACTTGCCTCTAACTTTGACATCTATCTTTTCAATATTTGTATTCTTTTTCCAAGTTTTGAAAGTAGTAGACTTTGAAATACCATACCTCTTGGAGTTCTCCTCTCCCAAGCTAGTTGCCCTTCGATTTTGCAGCAAGGTGTAACAATTCTTGCATATCAAAGTACGCTTGCCTATCCACTTGATGAGCAAGTTGTCGGATTAATCCACCAAGGAATCTAGCAAGTTAATTATGAAGTAACACCAAAATAAAACAAGAAATGAACAAACAAATAAGAGACACAAAGATATTTTTGGATAGAATTGCACACTGAAAAAATTAAAAAAAAATTCCAAAAAGAAAGAACGTGAAGATTTTAAGAACAATCTAAATCTCCTTTTTACAAAATTCGGGAAATTTAAAAGTTATCTTCAAGTGTAGATTATGAGAGAAAAAAAAATATCAAACACAACGGTTCTAGATTTAGATGAATTAAGAAAATGATGTGAATCGAAGTTTATTTGAAGATTATTTGATCTTCAAATAAACATGAAAATGATAAAAAAAATGATAAAGTTCGTTTATAATCACAATCGTAAGAACAAATATGATAAGATTTTTTTTTTTCAAGATCTCAATGTGATCTTTAGAAGAAAATGAGAACAAAATGAAGAGTTGATGAATAATGGCGGAAATGACAGAAAGAAAATAAATGGACAGATTTAAAGAAAATATAAACAATAGCAAAAATGAAAGATAAAGTCAATTCTAGAGCGGCCACAAAGATGTAAACCTAGGCTCTGATACCAAATCGATAAGGCAACCTTAATCCTCAGCCCAACGATCCAAGCTTTTGTTGAAGCAAGAACCCTCGAATCAAAGTAACTACCACCCCCTTATACGAAATTTGGATCAACCAAGAGATAATGCTAGAATTAGATTACCTCTTATGATCGAAAATCTGGAAGCAAGATTTGGAAACCTTGTTCTAAATTGAGTCACTCCACAATCGAACTTGATCAAGGCTTGGTTGAATGACTCGGGTGCAATTCTACCACAAGAATTGCTTGAAACTTAGAATGGAAAATATGATGCTCGAATTTGTAAGGAAACGTCTCAATTTGAGATTTGAATTACATTCTTCCACGAATCTGAATTTTATATAACATATTATGTGTATTTATAGTCTCCCGAAAAAACACGTTTATGGACAACATTTATTCCCGATCCCCTTTAATCTCCACAAAATAATAAGTCAAATTAGCCATTTGATTTTTACATAATTTATGAAATTAAAAATAGTTCTTTCTATCAAATGTTGATGTGCTTAAGTTGGTTTGAAATCAATTGAGCTCTCTGCGCGTAGGTTCAAATTCTATTGTTTTTGGATCGTGTAATAAGTCCAGTTGGAACATTTGAAACACCGTGATTCTTATCAATAGAAATATACATGTCTAGGACCTTGAATCACAATTTACAATCTTCCTTTGGTTAAAATTGAACAAAAACATTATCGAGTTTAAAGGATGGGGTTTAGATCAACCATTAATGGTTAGTTCAGGTGAACCAACCACATGATCATCTTCTAACTTGTGACCATTCTAACATGCGTGTGAGGAAGGCTTCGATAGTCCGATATCACCCTCGATCAGCACATTTTAGGTCTCAATTGAAATTAGTTCCTTCACCAAACTTCAAGATATCTCGAACTTGAACATGTAGGTACCAATCTTTCCTTCACCAAACTTCAAGATATCTCGAACTTGAACATGTAGGTACCAATCTCAGCAATTAACATTAACTCAGAAAAGAGAAATTGAGGCTCAAAATCATGGGGTTAACCAAACTTACCCAGAACTTTGGTGACAAGAAACTTTTTTCCATTTGCACGTTCTAGCCCTCAGTACACTATGATTTCACCCTATTTCCAATTAACACTAAGAGCCCAGAATTATACCTTATTATCGAGAAATGAGAGGATAGTTTTAGGATTAAACTCTCTTTTTTTGGATCCCAAAACCGACATTTGAAATTGAAATTTGATCAATCAATCCACTGTGTTTCAATTCCAAGTCCTTTATGAAAATGTTGCAATCACCATACAGCTTAAGATCAAGAGTTTGTCAATTTCAATAAAGAGAGTATTACAGGAAGGAAAGGTCCCGGTCTTACTTAATAGTTCATTTCTTCGTTCCTAAGATTGAGCCCATACGTCCCAAATTCAACTCTAGAGAAGTCTTGTCCAATGCGGAATGATTGAAAAAAAACCCTAAAAATAACAAGAAGAATATTGGTAGATGGCCGCAAAGTCTCAAAGGGAAGTTATTGACAACAAAGTGGGTTTTAAGTTGAGTTCACTTGCAAATAAATAAGTCTACCCTAGTTTGCGTAATTATGAACTATTTTCAAAATAGAGAGAAGGAAACATGACAATATATCATACGGTCACGATTAGTGGTTCATAATGTGAGATCCATATAGAGGTTCTCGGTGGCTTTTGGACTTTCCTCCTATGGAAGTTATTTGCACGGGTCAATATTAAGCTGAACTCTTAAAAGGATAAACTACGGTATCTAAAATAATGGGTAGATTTATTAGGATTGTTAATGATGTTGTTGAGCAAACTAATAGTTACTTAAACAACTATAAGAATTAAGAGTTATTCTAGTATAATATTTAACATCCATAGGAATAAGAGTTATTCTAGTATAATATTTCATTGACTTTGTCTCGTCTAATGGGAACACTTAGACCTACTCCATGACTGTAATTATTTTAAATCACTAAATACCCTACCATAAGAAAAAATTTATTGGGTTTCAGTTTTCGTAAAAAATGTTTGACTTTTATGGTATAATTGGTAAATAATTTATAAGCCCTCTAGAGCATTTTTATTATCCTTTAATCTTAGTACCAACACGTTTTGCCAAAAATTAGATTTGTTTGCTAAGCAACCAGAAGGTTCAACCACACCAGAGGTAGTTCCTTTGGCATTTTTACATGAAGCTTTAGCGATGTGATTCTCGTAATTAGGTTTATGTCTTTCAAACTTAATCCAGTGCAATGATTTATTGGGCTGCAATCAAAATTGATTGCTATTTCAGTGGCGGAAGTTCCCTTGATCTCTTCGTATGTTACTTCGCTGTCTTTAACTCCAGAAGCCTATATTAGAATAAAGAAGAACGATCAACGTATGCAAAGAAAACTGATAAACAAGGACATCATTTAAGCCCTAAAGGTTGTAGACATGATTTTGTTGACAGGTCATGCCCCCGTACTAACACAACAAGAATAGTAAATGTCCATCTAACATGAAAGCAAGTAAAGGGGTTAGAACGGGCATGCGACCGTGGACAGTACGTTCTGGACAAGCATCATTGGAACATCTGACACGCGACCGTAAGCAACGCGCCTTGGGCAAGTATGATCGTGATACCTTGCAACTTGACTTAAGCTCACCTCGTGAGGTTAGTATGCATGATCTCACTCCTTATGTGAATTATATGCATAGGTTAGTTACGTCTTATGATCAAAATAGGTTATAATTGGTTATAATACCTAATAAGTTAGATTTTATTGCATGATCATAGATTATGTACCCTAAAGGCTGAAGGGGTACTTGACGAGGTGGTAGAGCAAGTAGACCCTTGACTAAGACCGACCCGCTCAAATTCCTTATCAGGAAAGGCACGCTAAGAACAAACGTCGGAATAAGTGGATACCATGGCACTACAATCTATGATCTAGGCCACTAAGGTAAACTAGGGTAACATAAAAAGTGGGGACAATGTCAGAATATCTTGGACATCGAGAGTATTGAGATTTATCCCATAAAGCCTTGTAATTAATTGTTTAATTTTAATAATAAATTTGATTATTTTATTTAAAATTTAACATTATCCATGGTATGAAAAGTCCTAGATCATTGATGTAGTCTTAAACAATATGTGATTGACATACAAGAGGATCATGTTTAAGAACAACCTAAAGGTCAATAGTATATGGATAAGGTTTGGTCTCTTATACTGATAACATAATTGATACGAGTCTATTTGTAATTGTTACAAATGATTATATCTAAATCATTCACACATGTGCGTGGGTGTATCTTATACTGCAAAGAGTTTGTATAAAATTGGACCACCAAAATATTTTAACTCCCTTTACAAATTCATTAATCGAGAAAATTAATATTCTAGAGGATGACCATATGCGACTCAATCTTAATCCTAAGTGAGTTGAGAATGACTTTTACTACAAATTTAATATGACTACTGTTTTCGGAACTTGACCAAATAGGGAGCTGTGAACATAATTTCACGAGATGAAAATCACTCTCTCTGTCTGATATAGAATAAGTAGACGAGTAGTTCCCTTACGTGATGATTTTAGGAATTGAACAATGGAGTCACACTCTCTCACCAACCCTGGAGGGACTTGGTTTATGGTTTGATCATATATAAATTGTTCATGAGAGAGTTAGTGGCACTTGAGATATAAGATTTTTGGAACAACTCGTGATTGCTTGTAACGATTATATCAATGGTCAAAACTTGTTCCACACTATATAAGCGTGCAACTCTAGGCCTACCATGGAGTGGCCTATAGTTAATGAACAAAGTTGATTAATTCAGGAATATATTTAATTAATTTTATATCATTGCAGCTTATAATCAATACGGTCATCATAAGGTTTCTTTGCTTGCTCATAGTAATACTAAAAGGATGATTTAGTTGAAGGAAAATTTCAAAAAAGAAAAAGTATTTAATTTGAAGCGTTCAAATTGATATTTAACATATGAGTTAGATTAAATACAAAATGAGAAAAATATATATAGTTTGTTGTGTTTAAATCACTATTTAATATATTAGATATATTAAATATGAAGAAAGAAAAATACATTTCATTTAATGGGTTCAAATAAGAGAAAAATATATTTATTGTTTTTTATATATTAAATATTAAAATAATCCATGTATATAGATAATTGAATAAAATTATATATTTGAAATTTGAACGACATTTAAATTAGTTAAATATATATTAGAATATCTTTTGACATTTAAATATGATTCTGGGAATATGTTATATTAGATATTCAAATATATTATTTGATAAATATTCTCAAATCGCGGTAGATAAGATCATAGGGTTGAGCCAAAAAGCATCCCACGCTTTCTCCAATCGCAGTAGAGAGAGAAAAAGGAAGCAGTGATAGGAAAATGGAGAGTTGTGAAGTGATATTTGTAGGTTAATGTTTATCCTTCTAACTCTAATTTTAACCTACCTGTCTCGAGTACTATTCTATTCTTGTTCTATTTAACCATTATAGTTTTTATACGGTTTAACAAATTTTAATTAGGTATGTCACGTATGTAAATCTCTACCTCAGGCCAACATTTTTAAATTTAAGTCTATCTTATAAGATAAGACACTCATTGCCATTTTAATTCATGATGGTTCGATCTCTAATTTTTAGGTTTGATATTTAACATATGAGTTAGATTAAATACAAAAAGAGAAAAATAAATATAGTTTGGAGTGATTAAATTACTATTTAATATATTAGATATATTAAATATAAAGAAAAAAAAAAATACATTTCCTTTAAAGATTGAACACTTTCTCCCTATTTCCTTACATTAGTTTGTTTAACATTTTGTTTTGTTTAATTCTAAGTAAGATCAAGGACGATTCTAATACTTCCGCTACGCTAGTTAAACGTTCATTTCAAACGGAGAGGTCAACGGGACTCTTACAAGTTTGTCCCACTGACATTTAAAGGGAAGAACATAGCCCCAACTCATTGAATAAGAGAAATATCTAAACACCACAAGCTTGTTATGCCACTTTTTGAGGCAGTTGAAAATGAGACAAAGCGGCCAACTACGAAAGCTTCCAATGAAGCAAAATAACATGAGTACATGTTCTCATGTTCACTGCCTCGATGGTTCAACTACAAAACACCCCACGAGGTCCAAAAGTGTGATTTTGGGACAAAAAGATATCACAAAGGCTTTATGGAAGCTACCCTGTTTTTTTTAGAATACCATCACCATTGGCACCCAACATGCACTTGGTTCACTGACCACGGTGAAGGCTCGAGTGAACAACTTTGGCAAGGCCAGTGCTCTTATCCAGCACAATGGCATCCAAAGTCATTCCTCACCGTATCTGCGGATGTAGACACTCAAGCGATTGATAAGAGTGCTAAAGTTGGACTAGCTTTGGCCCTTGAGCCA

mRNA sequence

TCTACTGACCACGGTGAAGGCTCGAGTGAACAACTTTGGCAAAGCCAGTGCTCTTATCCAGCACGAATTGCGTCCAATGTCGTTCCTCACCGTATCTGCGGATGTAGACACCCAAGCGATTGATAAGAGTGCTAAAGCTTCTGGAGTTAAAGTCAGCGAAGTAACATACGAAGACAACAAGAGAACTTCCGCCACTGAAATAGCAATCAATTTTGATTGTAGCTCAATAAATCATTGCACCGGATTAAGCATGAAAGACATAAACCTAACTTATGAGAATCACATCGCTAAAGCTTCATGTAAAAATGCCGAAGGAACTACCTCTGGCTCGAGTGAACAACTTTGGCAAGGCCAGTGCTCTTATCCAGCACAATGGCATCCAAAGTCATTCCTCACCGTATCTGCGGATGTAGACACTCAAGCGATTGATAAGAGTGCTAAAGTTGGACTAGCTTTGGCCCTTGAGCCA

Coding sequence (CDS)

ATGTCGTTCCTCACCGTATCTGCGGATGTAGACACCCAAGCGATTGATAAGAGTGCTAAAGCTTCTGGAGTTAAAGTCAGCGAAGTAACATACGAAGACAACAAGAGAACTTCCGCCACTGAAATAGCAATCAATTTTGATTGTAGCTCAATAAATCATTGCACCGGATTAAGCATGAAAGACATAAACCTAACTTATGAGAATCACATCGCTAAAGCTTCATGTAAAAATGCCGAAGGAACTACCTCTGGCTCGAGTGAACAACTTTGGCAAGGCCAGTGCTCTTATCCAGCACAATGGCATCCAAAGTCATTCCTCACCGTATCTGCGGATGTAGACACTCAAGCGATTGATAAGAGTGCTAAAGTTGGACTAGCTTTGGCCCTTGAGCCA

Protein sequence

MSFLTVSADVDTQAIDKSAKASGVKVSEVTYEDNKRTSATEIAINFDCSSINHCTGLSMKDINLTYENHIAKASCKNAEGTTSGSSEQLWQGQCSYPAQWHPKSFLTVSADVDTQAIDKSAKVGLALALEP

Homology

[Close]

BLAST of CmaCh19G003610 vs. Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-12
Identity = 33/65 (50.77%), Postives = 49/65 (75.38%), Query Frame = 1


Query: 20  KASGVKVSEVTYEDNKRTSATEIAINFDCSSINHCTGLSMKDINLTYENHIAKASCKNAE 79
           + SGV++S+VTYED   TSATE+A+ FDCS  + C  + ++D+ LTY+N  A++SC +A+
Sbjct: 321 QVSGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKLEDVKLTYKNQAAESSCSHAD 380

Query: 80  GTTSG 85
           GTT G
Sbjct: 381 GTTEG 385

[Close]

BLAST of CmaCh19G003610 vs. Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.3e-09
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 1


Query: 22  SGVKVSEVTYEDNKRTSATEIAINFDCSSINHCTGLSMKDINLTYENHIAKASCKNAEGT 81
           SGVKVS V YED   TS TE+A+  DCS    CTG+ M D+NL   +  A+ASC NA G+
Sbjct: 328 SGVKVSNVRYEDIHGTSNTEVAVLLDCSKEKPCTGIVMDDVNLVSVHRPAQASCDNANGS 387

Query: 82  TS 84
            +
Sbjct: 388 AN 389

[Close]

BLAST of CmaCh19G003610 vs. Swiss-Prot
Match: VDAC3_ARATH (Mitochondrial outer membrane protein porin 3 OS=Arabidopsis thaliana GN=VDAC3 PE=1 SV=3)

HSP 1 Score: 54.7 bits (130), Expect = 8.9e-07
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 1


Query: 99  QWHPKSFLTVSADVDTQAIDKSAKVGLALALEP 132
           +W PKSF TVS +VD++AIDKSAKVG+ALAL+P
Sbjct: 242 EWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274

[Close]

BLAST of CmaCh19G003610 vs. Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-06
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1


Query: 57  LSMKDINLTY--ENHIAKASCKNAEGTTSGSSEQLWQGQCSYPAQWHPKSFLTVSADVDT 116
           LS KD  +T   ++ +   +   A   ++G +  L Q +      W PKSF T+S +VDT
Sbjct: 206 LSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQHE------WKPKSFFTISGEVDT 265

Query: 117 QAIDKSAKVGLALALEP 132
           ++IDKSAKVGLALAL+P
Sbjct: 266 KSIDKSAKVGLALALKP 276

[Close]

BLAST of CmaCh19G003610 vs. Swiss-Prot
Match: VDAC4_ORYSJ (Mitochondrial outer membrane protein porin 4 OS=Oryza sativa subsp. japonica GN=VDAC4 PE=3 SV=3)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-06
Identity = 23/33 (69.70%), Postives = 31/33 (93.94%), Query Frame = 1


Query: 99  QWHPKSFLTVSADVDTQAIDKSAKVGLALALEP 132
           +W PKSFLT+SA+VDT+AIDK++KVGL+L L+P
Sbjct: 285 EWRPKSFLTLSAEVDTKAIDKASKVGLSLVLKP 317

[Close]

BLAST of CmaCh19G003610 vs. TrEMBL
Match: A0A0A0KN91_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409610 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.3e-16
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 1


Query: 20  KASGVKVSEVTYEDNKRTSATEIAINFDCSSINHCTGLSMKDINLTYENHIAKASCKNAE 79
           +ASGVKVS+VTY+D   TSA+E+AINFDCS  N CTG++++DI LTY N I KASCKNA 
Sbjct: 319 QASGVKVSDVTYQDVNGTSASEVAINFDCSPTNPCTGITLEDIQLTYNNQIPKASCKNAR 378

Query: 80  GTTSG 85
           GT SG
Sbjct: 379 GTASG 383

[Close]

BLAST of CmaCh19G003610 vs. TrEMBL
Match: A0A059AU59_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00252 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 1


Query: 20  KASGVKVSEVTYEDNKRTSATEIAINFDCSSINHCTGLSMKDINLTYENHIAKASCKNAE 79
           +ASGV+VS+VTY+D   TSATE+A+ FDCSS + CTG+ M+D+ LTY N +A ASC +A 
Sbjct: 309 QASGVRVSDVTYQDIHGTSATEVAVKFDCSSTHPCTGIKMQDVKLTYRNQVATASCAHAG 368

Query: 80  GTTSGSSE 88
           GT SG+ +
Sbjct: 369 GTASGTEQ 376

[Close]

BLAST of CmaCh19G003610 vs. TrEMBL
Match: A5BNQ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g01300 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-13
Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 1


Query: 20  KASGVKVSEVTYEDNKRTSATEIAINFDCSSINHCTGLSMKDINLTYENHIAKASCKNAE 79
           + SGVKVS+VTY+D   TSATE+A+ FDCSS N C+G+++KD+ LTY+N  A+ASC NA+
Sbjct: 317 QVSGVKVSDVTYQDIHGTSATEVAVKFDCSSKNPCSGINLKDVKLTYKNKAAEASCANAD 376

Query: 80  GTTSGSSE 88
           G  SG  E
Sbjct: 377 GKASGFIE 384

[Close]

BLAST of CmaCh19G003610 vs. TrEMBL
Match: A0A0J8CUF2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g059140 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-13
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 20  KASGVKVSEVTYEDNKRTSATEIAINFDCSSINHCTGLSMKDINLTYENHIAKASCKNAE 79
           +ASGV++++VTY+D + +SAT IA+NFDCSS NHC+G+ M+DINLTY N  A +SC N  
Sbjct: 317 QASGVRINDVTYKDIRGSSATPIAVNFDCSSKNHCSGIKMEDINLTYNNKSASSSCTNTA 376

Query: 80  GTTSG 85
           G+T G
Sbjct: 377 GSTFG 381

[Close]

BLAST of CmaCh19G003610 vs. TrEMBL
Match: U5G720_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0007s00480g PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-13
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1


Query: 16  DKSAKASGVKVSEVTYEDNKRTSATEIAINFDCSSINHCTGLSMKDINLTYENHIAKASC 75
           D   +ASG+K+S VTY+D   TSAT++A+ FDCS  + CTG+ ++D+ LTY N +A ASC
Sbjct: 295 DCPGQASGIKISNVTYKDIHGTSATQVAVKFDCSKKHPCTGIRLEDVKLTYRNRLAYASC 354

Query: 76  KNAEGTTSGSSEQ 89
           +N +GT SG+S Q
Sbjct: 355 RNVDGTASGTSVQ 367

[Close]

BLAST of CmaCh19G003610 vs. TAIR10
Match: AT2G43880.1 (AT2G43880.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 68.2 bits (165), Expect = 4.4e-12
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1


Query: 20  KASGVKVSEVTYEDNKRTSATEIAINFDCSSINHCTGLSMKDINLTYENHIAKASCKNAE 79
           ++SGVK+S VT+ + K TS T IA+  DCS  NHCTGL ++DI LTY    + + C+NA 
Sbjct: 322 QSSGVKISGVTFANIKGTSTTPIAMKLDCSGSNHCTGLRLQDIKLTYMRRSSASYCRNAH 381

Query: 80  GTTSG 85
           G  SG
Sbjct: 382 GRASG 386

[Close]

BLAST of CmaCh19G003610 vs. TAIR10
Match: AT2G43870.1 (AT2G43870.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-10
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 1


Query: 16  DKSAKASGVKVSEVTYEDNKRTSATEIAINFDCSSINHCTGLSMKDINLTYENHIAKASC 75
           D   + SG+K+S+V + D   TSATE+ +  DCSS   CTG+ ++D+ LTY+N  A ++C
Sbjct: 309 DCPRQVSGIKISDVLFVDIHGTSATEVGVKLDCSSKKPCTGIRLEDVKLTYQNKPAASAC 368

Query: 76  KNAEGTTSG 85
            +A G  +G
Sbjct: 369 THAGGIEAG 377

[Close]

BLAST of CmaCh19G003610 vs. TAIR10
Match: AT2G43860.1 (AT2G43860.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 4.1e-10
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 1


Query: 22  SGVKVSEVTYEDNKRTSATEIAINFDCSSINHCTGLSMKDINLTYENHIAKASCKNAEGT 81
           SGVKVS V YED   TS TE+A+  DCS    CTG+ M D+NL   +  A+ASC NA G+
Sbjct: 328 SGVKVSNVRYEDIHGTSNTEVAVLLDCSKEKPCTGIVMDDVNLVSVHRPAQASCDNANGS 387

Query: 82  TS 84
            +
Sbjct: 388 AN 389

[Close]

BLAST of CmaCh19G003610 vs. TAIR10
Match: AT3G59850.1 (AT3G59850.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 5.4e-10
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1


Query: 20  KASGVKVSEVTYEDNKRTSATEIAINFDCSSINHCTGLSMKDINLTYENHIAKASCKNAE 79
           + SG+K+S+V + D   TSATE+ +  DCSS   CTG+ ++D+ LTY N  A   C +A 
Sbjct: 316 QVSGIKISDVMFFDIHGTSATEVGVKLDCSSKKPCTGIRIQDVKLTYRNKPATTDCSHAG 375

Query: 80  GTTSG 85
           G+ +G
Sbjct: 376 GSEAG 380

[Close]

BLAST of CmaCh19G003610 vs. TAIR10
Match: AT1G65570.1 (AT1G65570.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 58.2 bits (139), Expect = 4.5e-09
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 1


Query: 19  AKASGVKVSEVTYEDNKRTSATEIAINFDCSSINHCTGLSMKDINLTYENHIAKASCKNA 78
           ++ SG+K+++V Y     TSATEIAI  DCS    CTG+ M+ INLT     AK SC N 
Sbjct: 324 SQESGIKINDVIYSGIMGTSATEIAIKMDCSEKVPCTGIRMQAINLTSYGEAAKTSCTNV 383

Query: 79  EGTTSG 85
            G   G
Sbjct: 384 SGKQLG 389

[Close]

BLAST of CmaCh19G003610 vs. NCBI nr
Match: gi|449445220|ref|XP_004140371.1| (PREDICTED: polygalacturonase [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-15
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 1


Query: 20  KASGVKVSEVTYEDNKRTSATEIAINFDCSSINHCTGLSMKDINLTYENHIAKASCKNAE 79
           +ASGVKVS+VTY+D   TSA+E+AINFDCS  N CTG++++DI LTY N I KASCKNA 
Sbjct: 319 QASGVKVSDVTYQDVNGTSASEVAINFDCSPTNPCTGITLEDIQLTYNNQIPKASCKNAR 378

Query: 80  GTTSG 85
           GT SG
Sbjct: 379 GTASG 383

[Close]

BLAST of CmaCh19G003610 vs. NCBI nr
Match: gi|659121214|ref|XP_008460550.1| (PREDICTED: polygalacturonase-like [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 41/65 (63.08%), Postives = 53/65 (81.54%), Query Frame = 1


Query: 20  KASGVKVSEVTYEDNKRTSATEIAINFDCSSINHCTGLSMKDINLTYENHIAKASCKNAE 79
           +ASGVK+S+VTY+D   TSATE+AINFDCS  N CTG+ ++DINL Y + I +ASC+NA+
Sbjct: 319 QASGVKISDVTYQDINGTSATEVAINFDCSPSNPCTGIHLEDINLNYNDQIPQASCENAQ 378

Query: 80  GTTSG 85
           GT SG
Sbjct: 379 GTASG 383

[Close]

BLAST of CmaCh19G003610 vs. NCBI nr
Match: gi|672129494|ref|XP_008788256.1| (PREDICTED: polygalacturonase-like [Phoenix dactylifera])

HSP 1 Score: 85.5 bits (210), Expect = 7.5e-14
Identity = 39/65 (60.00%), Postives = 55/65 (84.62%), Query Frame = 1


Query: 20  KASGVKVSEVTYEDNKRTSATEIAINFDCSSINHCTGLSMKDINLTYENHIAKASCKNAE 79
           K+SGVK+SEVTY D + +SA+++A+NFDCS+ N C+G+ ++DI LTYEN  A+ASC +A+
Sbjct: 320 KSSGVKISEVTYNDIQGSSASQVAMNFDCSASNPCSGIELQDIKLTYENQPAEASCNHAD 379

Query: 80  GTTSG 85
           GTTSG
Sbjct: 380 GTTSG 384

[Close]

BLAST of CmaCh19G003610 vs. NCBI nr
Match: gi|629091487|gb|KCW57482.1| (hypothetical protein EUGRSUZ_H00252 [Eucalyptus grandis])

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 1


Query: 20  KASGVKVSEVTYEDNKRTSATEIAINFDCSSINHCTGLSMKDINLTYENHIAKASCKNAE 79
           +ASGV+VS+VTY+D   TSATE+A+ FDCSS + CTG+ M+D+ LTY N +A ASC +A 
Sbjct: 309 QASGVRVSDVTYQDIHGTSATEVAVKFDCSSTHPCTGIKMQDVKLTYRNQVATASCAHAG 368

Query: 80  GTTSGSSE 88
           GT SG+ +
Sbjct: 369 GTASGTEQ 376

[Close]

BLAST of CmaCh19G003610 vs. NCBI nr
Match: gi|702432493|ref|XP_010069207.1| (PREDICTED: polygalacturonase-like [Eucalyptus grandis])

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 1


Query: 20  KASGVKVSEVTYEDNKRTSATEIAINFDCSSINHCTGLSMKDINLTYENHIAKASCKNAE 79
           +ASGV+VS+VTY+D   TSATE+A+ FDCSS + CTG+ M+D+ LTY N +A ASC +A 
Sbjct: 329 QASGVRVSDVTYQDIHGTSATEVAVKFDCSSTHPCTGIKMQDVKLTYRNQVATASCAHAG 388

Query: 80  GTTSGSSE 88
           GT SG+ +
Sbjct: 389 GTASGTEQ 396

The following BLAST results are available for this feature:

BLAST of CmaCh19G003610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PGLR_PRUPE	1.4e-12	50.77	Polygalacturonase OS=Prunus persica PE=2 SV=1	[more]
PGLR6_ARATH	7.3e-09	51.61	Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 S...	[more]
VDAC3_ARATH	8.9e-07	72.73	Mitochondrial outer membrane protein porin 3 OS=Arabidopsis thaliana GN=VDAC3 PE...	[more]
VDAC1_ARATH	1.2e-06	42.86	Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=VDAC1 PE...	[more]
VDAC4_ORYSJ	1.5e-06	69.70	Mitochondrial outer membrane protein porin 4 OS=Oryza sativa subsp. japonica GN=...	[more]

BLAST of CmaCh19G003610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN91_CUCSA	7.3e-16	67.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409610 PE=3 SV=1	[more]
A0A059AU59_EUCGR	1.2e-13	57.35	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00252 PE=3 SV=1	[more]
A5BNQ9_VITVI	1.5e-13	58.82	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g01300 PE=3 SV=...	[more]
A0A0J8CUF2_BETVU	2.0e-13	58.46	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g059140 PE=3 S...	[more]
U5G720_POPTR	2.6e-13	52.05	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0007s00480g P...	[more]

BLAST of CmaCh19G003610 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43880.1	4.4e-12	50.77	Pectin lyase-like superfamily protein	[more]
AT2G43870.1	2.4e-10	42.03	Pectin lyase-like superfamily protein	[more]
AT2G43860.1	4.1e-10	51.61	Pectin lyase-like superfamily protein	[more]
AT3G59850.1	5.4e-10	43.08	Pectin lyase-like superfamily protein	[more]
AT1G65570.1	4.5e-09	46.97	Pectin lyase-like superfamily protein	[more]

BLAST of CmaCh19G003610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445220\|ref\|XP_004140371.1\|	1.1e-15	67.69	PREDICTED: polygalacturonase [Cucumis sativus]	[more]
gi\|659121214\|ref\|XP_008460550.1\|	1.5e-14	63.08	PREDICTED: polygalacturonase-like [Cucumis melo]	[more]
gi\|672129494\|ref\|XP_008788256.1\|	7.5e-14	60.00	PREDICTED: polygalacturonase-like [Phoenix dactylifera]	[more]
gi\|629091487\|gb\|KCW57482.1\|	1.7e-13	57.35	hypothetical protein EUGRSUZ_H00252 [Eucalyptus grandis]	[more]
gi\|702432493\|ref\|XP_010069207.1\|	1.7e-13	57.35	PREDICTED: polygalacturonase-like [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000743	Glyco_hydro_28
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold
IPR023614	Porin_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0004650	polygalacturonase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071555	cell wall organization
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0004650	polygalacturonase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G003610.1	CmaCh19G003610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 19..80 score: 2.
IPR011050	Pectin lyase fold/virulence factor	unknown	SSF51126	Pectin lyase-like	coord: 20..91 score: 1.92
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 17..90 score: 1.8
IPR023614	Porin domain	GENE3D	G3DSA:2.40.160.10		coord: 95..131 score: 2.
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 21..84 score: 1.2
None	No IPR available	PANTHER	PTHR31375:SF2	POLYGALACTURONASE/PECTINASE	coord: 21..84 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G003610	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G003610	Cucurbita moschata (Rifu)	cmacmoB510
CmaCh19G003610	Cucurbita moschata (Rifu)	cmacmoB512
CmaCh19G003610	Cucurbita moschata (Rifu)	cmacmoB513
CmaCh19G003610	Cucurbita pepo (Zucchini)	cmacpeB522