CmaCh19G003560 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G003560
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPlant protein of unknown function (DUF247)
LocationCma_Chr19 : 3848414 .. 3852735 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCAAAATATGATAGCGTTTGAGCATTTTTATGTTGGAAATGACAACAAGTATATCCAATATGTGTCATTACTAGATCATTTGATATGTACAGAGAAAGATGTGAGTGTACTTGTGAAAGCCGGAATCATAATAAACGAAATTGGAGGTAGTAGTATAGAAGTTTCAGAACTGTTGAATAATCTCGGTAAATTTGTTACAGTCCCAAATTGTTGCCACTTCAACGATATCAACAAAGCTTTACGAGAACAATGCAGTAGACGATGGAACAAGGCGATAGCTACACTCAAACATAACTATTTCAATACTCCTTGGGCTATTGTCTCCTTCGTTGGTGCAATCTTCCTCCTTATTTTTGCCCTGCTTCAAACTATATTTTCTAGTATATCAGCATTTCTTAAGAAGTGAAATCTATCCAAATAATATAGGTATGTTTCTTTTAAATTTTCCTCGTTCAATCTTTACCTTGTTAAATGTTAACTTTGTAGTTGCCAATCTTTTTAAATAAATATTATGTTACATTTGTGTTTGTTATCCTACCTATAGTTATTTAATGGACCATAATCTTATGCTAAAAGTTCAATTACTACGTTTTTCATATTATCTCTATTCTTTGTTTGTTATAAAGAAGCGTTTAAGATTGACACGGGTACATGAAAATTTGTGTTTGTGAGGGAAGGGTGCATAATGGTCAAGTTTTGAAGTTTTTGTTTACTCTTCGCTATATTTTTTTCTATATTTGTTTTATACTAAACAATTAAAACTATTTAGATATCAATTCATCTCCGTTTCAGGACCTTTGCTTTTCACGCACATGATGGTCTCATTTTGAAATTTAAGTAATGAAGTTTTGTTCCGTTAAAACTATATTAGTTGGATGTTTTCGAAACTTGGATATGTTCTAGAAGACACACCTAAAAACATCCAATCATGAAGGTTGACTAACCTCTTATTATAAAAGATATTTTTTACCAAAATTTTAAAAAAATTGATTTTAAATTCACGGCAATGCTTCATATTTCATATTTAAAGTTAGTTTAAGCTTCCTCTATAAATAATGAAGTAAGAGCAGTCATTTGGAGCAATATCAAGCAGTGTCAAGCCTTCAACCGTGAGAAATCAACATTTAGATTTTGGGTATCTCTTCCTTGAATTTCTTCTAAATTTGAGAGTTGTAATCCACCATTTCCCTTCAAACTTTTTTCTACCCCTTCTAAAAAGTATTGTCCACAAATCCTCGAAAGAAATCAAGAATTTGAAAATGTTCCTAACTTATATGTCCAATTTTATCTGTCATTGTATATGTTTAAAAGCTTAGAATCGCATTCTCACATTACACATGAATTCATCATGTCTAACCTATCACATTCATACCATCAACAAGCATTTTCATCAAGAATCATGTCCAATGAAAGAAAAATATATTCGGGTAAGATTTGAGGTTAAGTTCAAATTTCCTACCTAGGATCCTCTAAACAAAAATTAAGCATTTCATTAAAGACCTAGTAAGGACTAGAGGGAGCTGCTAATGAGTTTCTGCATTTTGGTTGACTTCCAATCAAGCCTTTGACTCAAACATCGCCACGATCACACAAATTTGTTCTTCCGAGATTACATAAGCATGAGGTAAGTATAAGGAAGAAGTTTCGTGAAGAAGTCATGTCTTGAAAAGGTCTTAATTAGCCTGACAAATAACACCAACTATATGTGAAGAGGGAAAAAATGCGTGTTTGCACAACAGCGAATCAACTTCCTTGGACACGTAATAGAAGCAAGCAAGGTAGGTATGGAAGAGGAGAAAGTCAAAGCCATGAAGGAGTGGAAGACCCCTCCTCAGTGATAGAAGTGCGCTATTTCCTTGGTTGGCAAATTACTATCGGTGATTTGTGGAAGGATTCTCAAAGTGCGCAGACTCCTTGACCGAACTACAAAAGAAGGAAAACAAGTGGAGCTAGACTTCACAGTGTCAAGAAGCCTTTGGCAACCTTAAGAATGCCATGATGGAAGGGCCAGTTTTAGGGATTGCCGATGTGACGAAACCTTTCGAAGTCGAGATGGTGCTTCAGACTTCGCCCTAGGGGCATCCTATTGCAAGAAGGACACCCCATTGCATACGAGAGCCAGAAGCTAAACGATGCAAAAAGAAGGTACGCAGCATCCAAGAAAGAAATGTTGGCAGTGGTCCACTGTTTACGATCTTGGAGATAGTACTTCTTCGGAGCCAAAATTGTAGTGAAGACACACAACAGCTCCATATCTCACTTCTTTAAAAAATCCAAGTTATCGTCGAAGCAAGCGCGTTGGCAAGAATGCATTGCCGAATTTGACTTCCAGTTCAAACACAGGCCATGTAAAGCAAACCAAGGTGCATATGCTCTAAGTTGAAAGAGTGAGTATGCGGCCCTGTGCATGTTAGCTCATCTACAAGCAAGTAAGTTGAGTGGAACGATACAGGAAAGTATCAAGGAACACCTAGCCCGGTCGCTCAGGCCATCATGCAGTTAGCAAGAGAGGGGAAGACTCGCCAGTTTTGGGTCGAAAACAATTTACTCTTCACCAAAGGAAATCGTCTCTTTGCCCCTGTTCGGGGAACTTGAGGAGACTCCTACTAAATGAATGCCACAACACACCATGGGCGGGTCACAACGGGTGGTAGAGAACCTATGCCCTCCTAAAAAGGGGTACTATTGGCCGAACCTCTACGACGATGCGATACAGTTCACAAAGACCTGTCTTATCTGCCAACAAGATGAGGTTGAACGAAACATGATTGCGGGACTACTAGAACCTCTACCAGTCTCGTCCCGACCATGGAAAAGTGTTTCTCTAGACTACATCACACACCTCCCCAAGGTAAGAGAAATGGAGTCTATCTTGGTCATCATTGACAAATTCTCCAAATATGCCATATTTATCCCGACCCGCAAGTCATGCTCGGCCGAAACGACCATACAATTAGTTTTTCGACACGTAGTCAAGTTGTGGGGCATTCCCACTAGGATTGTTAGCGATCGCGATCCGAGATTCACAGGGTCCTTTTGGACTGAATTGTTCAAGCTATTGGGGTCGAGCCATCTCTTCGAGTAATCACCCCAAAATTGATGGACAAATAGAAAGGTTTAACAGTATGCTTGATCGAGTCTTGGCTATGTTTCAAAGAAAATGTTTTAGAAATGGTAAGGAAGGAAATGTATTTTTTTTTTTTTTTTTTTTAAGAAAGCAATAGTAGAGGCTATAAGAAAATAAGCAACAACCACAACTTTGATAGCATATAACCTGAATAGGAAGAATTGATGACTAGTCACATACCTTATAGTACATTTTAGCCCTGACGGGTGTAGACACAATTTTGTTGATAGGTTATACACCCCCGTACTAACACAACAATAATAGTGAATGCTTATCTAACTTGAAAGTAAGTAAAGAGGTTTGGAACGGGCATGCGGCTGTGGACAACACGTCATGAAAAGCATAATTGGACATCTTATATGCGACCGTAGGCAACACGCCTTGGACAAGCATGACCGTGACAACCTACAACTTGACTTAAGCTCACCTCGTCTTGACAAGGTATGTAAGTTGTAAAGTTAGTAGACATGATCTCACTCCTTATGTGAATTATATGCATATGTCAGTTACTGTCTTTTAAACTAATTAGGATACAATTGGTTACAATACCTAATAACTTGGAGTCTATGGCATGATGATAGTTTATGGACCTTAAAACCTGAAGTGGTACTATACGAGAAGATAGAGCAGGTAGAGCCTTGACTGAGACCTACCCTGCTCAAATTCCTTATAAGGAAAGGCATGCTAAGAACAAGCGTTGGAATAAGTAGATACCATGATGCTACCATCTATGATCTAGGTCAATCAGATAAACTAGGGTAACATAAACAGTGGAGAAAATGTCAGAATATCTTAGTGGTCGAGAGTGTTAAGATTATGCCCTAAAGCCTCGTAATTAATTGTTTAATTTTAATAATAACTTTGATTATTTTATTTAAAATTTAATATTATCCCATATGTGATTCACATACAAGAGGATCATGTTTAAGAATAACCTAAAGGGTCTATAGTATATGAATAAGGTTTGCCGATGCTAAGCAACTAGAAGGTTCAACCACACCACAGGTAATTCCTTCAGCATTTTTACATAAAGCTTTAGCGATGTGATTCTCGTAAGTTAGCTTTATGTCAAGCTTAATCCAGTGCAATGATTTGTTGGGCTACAATCAAAACTGATTGCTATTTCAGTGGCCGAAGTTTCCTTGATGTCTTCGTATGTTACTTCGCTAACTTTAACTTCCGAATCCTAA

mRNA sequence

ATGATGCAAAATATGATAGCGTTTGAGCATTTTTATGTTGGAAATGACAACAAGTATATCCAATATGTGTCATTACTAGATCATTTGATATGTACAGAGAAAGATGTGAGTGTACTTGTGAAAGCCGGAATCATAATAAACGAAATTGGAGGTAGTAGTATAGAAGTTTCAGAACTGTTGAATAATCTCGGTAAATTTGTTACAGTCCCAAATTGTTGCCACTTCAACGATATCAACAAAGCTTTACGAGAACAATGCAGTAGACGATGGAACAAGGCGATAGCTACACTCAAACATAACTATTTCAATACTCCTTGGGCTATTGTCTCCTTCGTTGGTGCAATCTTCCTCCTTATTTTTGCCCTGCTTCAAACTATATTTTCTATGGCCGAAGTTTCCTTGATGTCTTCGTATGTTACTTCGCTAACTTTAACTTCCGAATCCTAA

Coding sequence (CDS)

ATGATGCAAAATATGATAGCGTTTGAGCATTTTTATGTTGGAAATGACAACAAGTATATCCAATATGTGTCATTACTAGATCATTTGATATGTACAGAGAAAGATGTGAGTGTACTTGTGAAAGCCGGAATCATAATAAACGAAATTGGAGGTAGTAGTATAGAAGTTTCAGAACTGTTGAATAATCTCGGTAAATTTGTTACAGTCCCAAATTGTTGCCACTTCAACGATATCAACAAAGCTTTACGAGAACAATGCAGTAGACGATGGAACAAGGCGATAGCTACACTCAAACATAACTATTTCAATACTCCTTGGGCTATTGTCTCCTTCGTTGGTGCAATCTTCCTCCTTATTTTTGCCCTGCTTCAAACTATATTTTCTATGGCCGAAGTTTCCTTGATGTCTTCGTATGTTACTTCGCTAACTTTAACTTCCGAATCCTAA

Protein sequence

MMQNMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELLNNLGKFVTVPNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIFALLQTIFSMAEVSLMSSYVTSLTLTSES
Homology
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BLAST of CmaCh19G003560 vs. Swiss-Prot
Match: Y3720_ARATH (UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-10
Identity = 36/123 (29.27%), Postives = 64/123 (52.03%), Query Frame = 1 

Query: 4   NMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELLNNL 63
           N +AFE FY  + N+   Y+  +  L+  E+DV+ L    +II    GS+ EVSE    +
Sbjct: 329 NCVAFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKTI 388

Query: 64  GKFVTVP-NCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIFAL 123
            K V    +  + N++ K + E   + +N   A  +H +F +PW  +S    +F+++  +
Sbjct: 389 SKDVVFEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLSSCAVLFVILLTM 448

Query: 124 LQT 126
           LQ+
Sbjct: 449 LQS 451

[Close]
BLAST of CmaCh19G003560 vs. TrEMBL
Match: A0A0A0LPJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380630 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.0e-34
Identity = 72/129 (55.81%), Postives = 97/129 (75.19%), Query Frame = 1 

Query: 1   MMQNMIAFEHFYVGNDNKY-IQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSEL 60
           +++N+IAF+ +  GN N Y I YV  LD LI TE+D  +L   G+IIN +GGS  +++E+
Sbjct: 260 VIRNVIAFDQYPAGNKNAYAIHYVLFLDDLINTEQDAHLLANVGVIINTLGGSDKDITEM 319

Query: 61  LNNLGKFVTVPNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLI 120
            NNL K+VT P C HF+DI+K LR+ C++RWNKAIA+LKHNYFNTPWAI+SF+ A  L+ 
Sbjct: 320 FNNLSKYVTFPVCSHFDDISKDLRKHCNKRWNKAIASLKHNYFNTPWAIISFLAATILIF 379

Query: 121 FALLQTIFS 129
             +LQTIFS
Sbjct: 380 LTILQTIFS 388

[Close]
BLAST of CmaCh19G003560 vs. TrEMBL
Match: A0A0A0LQ57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380610 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-33
Identity = 78/129 (60.47%), Postives = 97/129 (75.19%), Query Frame = 1 

Query: 1   MMQNMIAFEHFYVGNDNKY-IQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSEL 60
           +++N++AFE F  GN  KY IQYV+ LD LI TEKD+ +LVKAG+IIN+ GGS  EVSEL
Sbjct: 340 LIRNVLAFEIFPAGNQKKYAIQYVTFLDDLISTEKDLCLLVKAGVIINDTGGSDKEVSEL 399

Query: 61  LNNLGKFVTVPNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLI 120
            N+L K VT P   +F+D +KALR  C   WNKA A+LKH+YFNTPWAI+SF  A FL+I
Sbjct: 400 FNSLTKLVTTPLPSYFDDTSKALRVHCDGSWNKAKASLKHSYFNTPWAIISFFAATFLII 459

Query: 121 FALLQTIFS 129
             +LQTIFS
Sbjct: 460 LTILQTIFS 468

[Close]
BLAST of CmaCh19G003560 vs. TrEMBL
Match: A0A0A0LM96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380080 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-33
Identity = 79/130 (60.77%), Postives = 100/130 (76.92%), Query Frame = 1 

Query: 1   MMQNMIAFEHFYVGNDNKY-IQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSEL 60
           MM+N++AFEHF V  +N Y I YV+ +D+LI TEKDV++LVK  IIIN+IGGS  EVS+L
Sbjct: 310 MMRNLLAFEHFPVEVNNTYVIPYVTFMDYLISTEKDVNLLVKEKIIINDIGGSDREVSQL 369

Query: 61  LNNLGKFVTV-PNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLL 120
            NNL KFV+  PN  +FN+I++ LRE C R WNKA A+LKHNYFNTPWA +SF  A  LL
Sbjct: 370 FNNLCKFVSSSPNDNYFNNISEGLREHCDRWWNKAKASLKHNYFNTPWAAISFSAATVLL 429

Query: 121 IFALLQTIFS 129
           +  +LQT+FS
Sbjct: 430 VLTILQTVFS 439

[Close]
BLAST of CmaCh19G003560 vs. TrEMBL
Match: A0A0A0LSF4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380060 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-32
Identity = 75/130 (57.69%), Postives = 96/130 (73.85%), Query Frame = 1 

Query: 1   MMQNMIAFEHFYVGNDNKYI-QYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSEL 60
           + +N++AFE F  GN   Y  QY+  +D+LI T+KDV +LV +G+IIN IGGS  EVS+L
Sbjct: 377 LFRNLVAFEQFQAGNGKMYATQYIIFMDNLINTKKDVRLLVNSGVIINNIGGSYKEVSKL 436

Query: 61  LNNLGKFVT-VPNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLL 120
            N LGKF++  P    FNDI+K L + C+RRWNKA A+LKHNYFNTPWAIVSF+ A  L+
Sbjct: 437 FNKLGKFISGSPTSSEFNDISKDLHKHCNRRWNKAKASLKHNYFNTPWAIVSFIAASCLI 496

Query: 121 IFALLQTIFS 129
           +  LLQTIFS
Sbjct: 497 LLTLLQTIFS 506

[Close]
BLAST of CmaCh19G003560 vs. TrEMBL
Match: A0A0A0LLX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-31
Identity = 75/130 (57.69%), Postives = 98/130 (75.38%), Query Frame = 1 

Query: 1   MMQNMIAFEHFYVGNDNKY-IQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSEL 60
           MM++++AFEHF +   N Y I Y++ +D+LI TE DV++LVK  IIIN+IGGS  EVS+L
Sbjct: 339 MMRDLLAFEHFPIEVQNTYVIPYITFMDYLISTENDVNLLVKEKIIINDIGGSDREVSQL 398

Query: 61  LNNLGKFVTVP-NCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLL 120
            NNL KFV+   N  +FNDI++ LR+ C R WNKA ATLKHNY NTPWA +SF+ A+ LL
Sbjct: 399 FNNLCKFVSSSFNNIYFNDISERLRKHCDRWWNKAKATLKHNYCNTPWAFISFLAALILL 458

Query: 121 IFALLQTIFS 129
           I  +LQT+FS
Sbjct: 459 ILTVLQTVFS 468

[Close]
BLAST of CmaCh19G003560 vs. TAIR10
Match: AT3G50160.1 (AT3G50160.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 91.7 bits (226), Expect = 4.2e-19
Identity = 53/127 (41.73%), Postives = 75/127 (59.06%), Query Frame = 1 

Query: 4   NMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELLNNL 63
           N+IAFE  ++ +  K   Y+  +D+LI + +DVS L   GII N +G  S EVS+L N L
Sbjct: 368 NLIAFEQCHIKSSKKITSYIIFMDNLINSSEDVSYLHHYGIIENWLGSDS-EVSDLFNGL 427

Query: 64  GKFVTV-PNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIFAL 123
           GK V   PN  + + +   +     R+WN   ATL+H YFN PWA  SF+ A+ LLIF  
Sbjct: 428 GKEVIFDPNDGYLSALTGEVNIYYRRKWNYLKATLRHKYFNNPWAYFSFIAAVTLLIFTF 487

Query: 124 LQTIFSM 130
            Q+ F++
Sbjct: 488 CQSFFAV 493

[Close]
BLAST of CmaCh19G003560 vs. TAIR10
Match: AT3G50170.1 (AT3G50170.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 82.4 bits (202), Expect = 2.5e-16
Identity = 47/130 (36.15%), Postives = 74/130 (56.92%), Query Frame = 1 

Query: 1   MMQNMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELL 60
           +  N+IAFE  ++ + N    Y+  +D+LI + +DVS L   GII + +G  S EV++L 
Sbjct: 403 LFSNLIAFEQCHIESSNHITSYIIFMDNLINSSEDVSYLHYCGIIEHWLGSDS-EVADLF 462

Query: 61  NNLGKFVTV-PNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLI 120
           N L + V   P   H + ++  +    +R+WN   ATL H YFN PWA  SF  A+ LL+
Sbjct: 463 NRLCQEVVFDPKDSHLSRLSGDVNRYYNRKWNVLKATLTHKYFNNPWAYFSFSAAVILLL 522

Query: 121 FALLQTIFSM 130
             L Q+ +++
Sbjct: 523 LTLCQSFYAV 531

[Close]
BLAST of CmaCh19G003560 vs. TAIR10
Match: AT3G50150.1 (AT3G50150.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 81.3 bits (199), Expect = 5.7e-16
Identity = 47/130 (36.15%), Postives = 72/130 (55.38%), Query Frame = 1 

Query: 1   MMQNMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELL 60
           +  N+IAFE  +  + N    Y+  +D+LI + +DVS L   GII + +G  S EV++L 
Sbjct: 373 LFSNLIAFEQCHTQSSNNITSYIIFMDNLINSSQDVSYLHHDGIIEHWLGSDS-EVADLF 432

Query: 61  NNLGKFVTV-PNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLI 120
           N L K V   P   + + +++ +    SR+WN   ATL+  YFN PWA  SF  A+ LL 
Sbjct: 433 NRLCKEVIFDPKDGYLSQLSREVNRYYSRKWNSLKATLRQKYFNNPWAYFSFSAAVILLF 492

Query: 121 FALLQTIFSM 130
               Q+ F++
Sbjct: 493 LTFFQSFFAV 501

[Close]
BLAST of CmaCh19G003560 vs. TAIR10
Match: AT3G50130.1 (AT3G50130.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 81.3 bits (199), Expect = 5.7e-16
Identity = 46/129 (35.66%), Postives = 72/129 (55.81%), Query Frame = 1 

Query: 1   MMQNMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELL 60
           +  N+IAFE  ++ + N    Y+  +D+LI + +DV  L   GII + +G +  EV++L 
Sbjct: 428 LFSNLIAFEQCHIDSSNDITSYIIFMDNLIDSSEDVRYLHYCGIIEHWLG-NDYEVADLF 487

Query: 61  NNLGKFVTV-PNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLI 120
           N L + V   P   + + ++  +    SR+WN   A LKH YFN PWA  SF  A+ LL+
Sbjct: 488 NRLCQEVAFDPQNSYLSQLSNKVDRNYSRKWNVLKAILKHKYFNNPWAYFSFFAALVLLV 547

Query: 121 FALLQTIFS 129
             L Q+ F+
Sbjct: 548 LTLFQSFFT 555

[Close]
BLAST of CmaCh19G003560 vs. TAIR10
Match: AT3G50120.1 (AT3G50120.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 79.3 bits (194), Expect = 2.2e-15
Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 1 

Query: 4   NMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELLNNL 63
           N+IAFE  ++ + N    Y+  +D+LI + +DVS L   GII + +G  S EV++L N L
Sbjct: 398 NLIAFEQCHIDSSNDITSYIIFMDNLIDSHEDVSYLHYCGIIEHWLGSDS-EVADLFNRL 457

Query: 64  GKFVTVPN-CCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIFAL 123
            + V       + + ++  +      +WN   ATLKH YFN PWAIVSF  A+ LL+   
Sbjct: 458 CQEVVFDTEDSYLSRLSIEVNRYYDHKWNAWRATLKHKYFNNPWAIVSFCAAVILLVLTF 517

Query: 124 LQTIFSM 130
            Q+ +++
Sbjct: 518 SQSFYAV 523

[Close]
BLAST of CmaCh19G003560 vs. NCBI nr
Match: gi|659089573|ref|XP_008445583.1| (PREDICTED: LOW QUALITY PROTEIN: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-34
Identity = 81/130 (62.31%), Postives = 97/130 (74.62%), Query Frame = 1 

Query: 1   MMQNMIAFEHFYVGNDNKYI-QYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSEL 60
           M +N+IAFE F  GN+N Y  QY+  +D LI TEKDV +LV +G+IIN IGGS  EVSEL
Sbjct: 435 MFRNLIAFEQFPAGNENMYATQYILFMDDLISTEKDVRLLVNSGVIINNIGGSDKEVSEL 494

Query: 61  LNNLGKFVT-VPNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLL 120
            NNLGKFV   P+   FN I+KALR+ C+ RWNKA A+LKHNYFNTPWA +SF  A FL+
Sbjct: 495 FNNLGKFVNQCPSPYMFNHISKALRKHCNGRWNKAKASLKHNYFNTPWAFISFFAASFLV 554

Query: 121 IFALLQTIFS 129
           +  LLQTIFS
Sbjct: 555 LLTLLQTIFS 564

[Close]
BLAST of CmaCh19G003560 vs. NCBI nr
Match: gi|659088838|ref|XP_008445188.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 3.3e-34
Identity = 81/130 (62.31%), Postives = 100/130 (76.92%), Query Frame = 1 

Query: 1   MMQNMIAFEHFYVGNDNKY-IQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSEL 60
           MM+N++AFEHF V   N Y I Y++ +D+LI TEKDV++LVK  IIIN+IGGS  EVS+L
Sbjct: 346 MMRNLLAFEHFPVEVKNTYVIPYLTFMDYLIITEKDVNLLVKEKIIINDIGGSDREVSQL 405

Query: 61  LNNLGKFVTV-PNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLL 120
            NNL KFV+  PN  +FND +KALR+ C RRWNKA A+LKHNYFNTPWA +S   A FLL
Sbjct: 406 FNNLCKFVSSSPNDNYFNDTSKALRDHCDRRWNKAKASLKHNYFNTPWAAISVSAATFLL 465

Query: 121 IFALLQTIFS 129
           +  +LQTIFS
Sbjct: 466 VLTILQTIFS 475

[Close]
BLAST of CmaCh19G003560 vs. NCBI nr
Match: gi|778674385|ref|XP_011650198.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 5.7e-34
Identity = 72/129 (55.81%), Postives = 97/129 (75.19%), Query Frame = 1 

Query: 1   MMQNMIAFEHFYVGNDNKY-IQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSEL 60
           +++N+IAF+ +  GN N Y I YV  LD LI TE+D  +L   G+IIN +GGS  +++E+
Sbjct: 273 VIRNVIAFDQYPAGNKNAYAIHYVLFLDDLINTEQDAHLLANVGVIINTLGGSDKDITEM 332

Query: 61  LNNLGKFVTVPNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLI 120
            NNL K+VT P C HF+DI+K LR+ C++RWNKAIA+LKHNYFNTPWAI+SF+ A  L+ 
Sbjct: 333 FNNLSKYVTFPVCSHFDDISKDLRKHCNKRWNKAIASLKHNYFNTPWAIISFLAATILIF 392

Query: 121 FALLQTIFS 129
             +LQTIFS
Sbjct: 393 LTILQTIFS 401

[Close]
BLAST of CmaCh19G003560 vs. NCBI nr
Match: gi|700207815|gb|KGN62934.1| (hypothetical protein Csa_2G380630 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 5.7e-34
Identity = 72/129 (55.81%), Postives = 97/129 (75.19%), Query Frame = 1 

Query: 1   MMQNMIAFEHFYVGNDNKY-IQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSEL 60
           +++N+IAF+ +  GN N Y I YV  LD LI TE+D  +L   G+IIN +GGS  +++E+
Sbjct: 260 VIRNVIAFDQYPAGNKNAYAIHYVLFLDDLINTEQDAHLLANVGVIINTLGGSDKDITEM 319

Query: 61  LNNLGKFVTVPNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLI 120
            NNL K+VT P C HF+DI+K LR+ C++RWNKAIA+LKHNYFNTPWAI+SF+ A  L+ 
Sbjct: 320 FNNLSKYVTFPVCSHFDDISKDLRKHCNKRWNKAIASLKHNYFNTPWAIISFLAATILIF 379

Query: 121 FALLQTIFS 129
             +LQTIFS
Sbjct: 380 LTILQTIFS 388

[Close]
BLAST of CmaCh19G003560 vs. NCBI nr
Match: gi|659089575|ref|XP_008445584.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 152.1 bits (383), Expect = 7.4e-34
Identity = 81/130 (62.31%), Postives = 94/130 (72.31%), Query Frame = 1 

Query: 1   MMQNMIAFEHFYVGNDNKYI-QYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSEL 60
           M +N+IAFE F  GN N Y  QY+  +D LI TEKDV +LV +G+IIN IGGS  EVSEL
Sbjct: 409 MFRNLIAFEQFRAGNQNMYATQYILFIDDLISTEKDVRLLVNSGVIINNIGGSDKEVSEL 468

Query: 61  LNNLGKFVT-VPNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLL 120
            NNLGKFV    N   FN I+KALR+ C+ RWNKA A+LKHNYFNTPWA +SF    FLL
Sbjct: 469 FNNLGKFVNHCRNPYMFNHISKALRKHCNGRWNKAKASLKHNYFNTPWAFISFFAGSFLL 528

Query: 121 IFALLQTIFS 129
           +  LLQTIFS
Sbjct: 529 LLTLLQTIFS 538

The following BLAST results are available for this feature:
BLAST of CmaCh19G003560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y3720_ARATH2.6e-1029.27UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1[more]
BLAST of CmaCh19G003560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPJ5_CUCSA4.0e-3455.81Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380630 PE=4 SV=1[more]
A0A0A0LQ57_CUCSA1.2e-3360.47Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380610 PE=4 SV=1[more]
A0A0A0LM96_CUCSA2.6e-3360.77Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380080 PE=4 SV=1[more]
A0A0A0LSF4_CUCSA1.7e-3257.69Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380060 PE=4 SV=1[more]
A0A0A0LLX1_CUCSA1.4e-3157.69Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1[more]
BLAST of CmaCh19G003560 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G50160.14.2e-1941.73 Plant protein of unknown function (DUF247)[more]
AT3G50170.12.5e-1636.15 Plant protein of unknown function (DUF247)[more]
AT3G50150.15.7e-1636.15 Plant protein of unknown function (DUF247)[more]
AT3G50130.15.7e-1635.66 Plant protein of unknown function (DUF247)[more]
AT3G50120.12.2e-1536.22 Plant protein of unknown function (DUF247)[more]
BLAST of CmaCh19G003560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659089573|ref|XP_008445583.1|1.5e-3462.31PREDICTED: LOW QUALITY PROTEIN: UPF0481 protein At3g47200-like [Cucumis melo][more]
gi|659088838|ref|XP_008445188.1|3.3e-3462.31PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo][more]
gi|778674385|ref|XP_011650198.1|5.7e-3455.81PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus][more]
gi|700207815|gb|KGN62934.1|5.7e-3455.81hypothetical protein Csa_2G380630 [Cucumis sativus][more]
gi|659089575|ref|XP_008445584.1|7.4e-3462.31PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004158DUF247_pln
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G003560.1CmaCh19G003560.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004158Protein of unknown function DUF247, plantPFAMPF03140DUF247coord: 1..119
score: 7.4
NoneNo IPR availablePANTHERPTHR31549FAMILY NOT NAMEDcoord: 1..141
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G003560Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G003560Cucurbita moschata (Rifu)cmacmoB510
CmaCh19G003560Cucurbita moschata (Rifu)cmacmoB512
CmaCh19G003560Cucurbita moschata (Rifu)cmacmoB513
CmaCh19G003560Cucurbita pepo (Zucchini)cmacpeB522