CmaCh19G003530 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G003530
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPolygalacturonase family protein
LocationCma_Chr19 : 3742532 .. 3743330 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCTGAGGAGGATGGAGTGCATAACGTTACAGTGAAATCATCTACATTCACAAGGACTCGGAATGGAGTAAGGATTAAGTCTTGGGGAAGACCAAGCAATGGATTCGCTACCAACGTTCATTTTCAACACATTATTATGGATAATGTGAAAAACCCAATCATAATTGATCAAAATTATTGTCCACATCTCAAAGACTGTCCTGGTCAAGTATATTTCCTCATTAATCTCATACATTGTTAATTTTTTTCTAATTATATTTAAACTTAAATTTGATGAATACAATTTAAATTTTAAATTTTATAAATAATTGATTTATTTTATCTTTAATGGTTTGAAATTTGTTTGTGTTTAAGATGGGTGTTAAATTATTAGTATTATTTTTTGGTACATTAAATTACTTTTATAGGTAATAATTTAGGGATGCTATTACTTTTGATGTCTTAAAGTGGTATGAAGCTTTTATGATTTTATTTTTTAATTTATCCAAAATATCTAATATCATTGGAGATAATTGCTCTAACTTATAATATACTATCTAGAAAATCTAAGACTATGCTTGATTTATATCTTATTATTTAATTCCTAATTTATATTTGGTTTTAGAATATAGTTTCATTGTTCTTCTTTATTTTAATAGGATTCTGAAGTTAAAGTTAGCGAAGTAACATACAAAGACATCAAGGGAACTTCAGCCACTGAAATAGCTATTGATTGTAGTCCAACAAATCATTGCACTAGATTAAGCTTGATAGACATAAAGCTAACTTACGAGAATCACATCACTAAAGCTTCA

mRNA sequence

ATGGAGGCTGAGGAGGATGGAGTGCATAACGTTACAGTGAAATCATCTACATTCACAAGGACTCGGAATGGAGTAAGGATTAAGTCTTGGGGAAGACCAAGCAATGGATTCGCTACCAACGTTCATTTTCAACACATTATTATGGATAATGTGAAAAACCCAATCATAATTGATCAAAATTATTGTCCACATCTCAAAGACTGTCCTGGTCAAGATTCTGAAGTTAAAGTTAGCGAAGTAACATACAAAGACATCAAGGGAACTTCAGCCACTGAAATAGCTATTGATTGTAGTCCAACAAATCATTGCACTAGATTAAGCTTGATAGACATAAAGCTAACTTACGAGAATCACATCACTAAAGCTTCA

Coding sequence (CDS)

ATGGAGGCTGAGGAGGATGGAGTGCATAACGTTACAGTGAAATCATCTACATTCACAAGGACTCGGAATGGAGTAAGGATTAAGTCTTGGGGAAGACCAAGCAATGGATTCGCTACCAACGTTCATTTTCAACACATTATTATGGATAATGTGAAAAACCCAATCATAATTGATCAAAATTATTGTCCACATCTCAAAGACTGTCCTGGTCAAGATTCTGAAGTTAAAGTTAGCGAAGTAACATACAAAGACATCAAGGGAACTTCAGCCACTGAAATAGCTATTGATTGTAGTCCAACAAATCATTGCACTAGATTAAGCTTGATAGACATAAAGCTAACTTACGAGAATCACATCACTAAAGCTTCA

Protein sequence

MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAIDCSPTNHCTRLSLIDIKLTYENHITKAS
Homology
[Close]
BLAST of CmaCh19G003530 vs. Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 4.1e-38
Identity = 76/124 (61.29%), Postives = 96/124 (77.42%), Query Frame = 1 

Query: 2   EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           E EE GV NVTVK+ TF+ T+NG+RIKSWGRPS GFA N+ FQH  M NV+NPI+IDQ+Y
Sbjct: 252 EQEEAGVQNVTVKTVTFSGTQNGLRIKSWGRPSTGFARNILFQHATMVNVENPIVIDQHY 311

Query: 62  CPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENHI 121
           CP  K CPGQ S V++S+VTY+DI GTSATE+A+  DCSP + C  + L D+KLTY+N  
Sbjct: 312 CPDNKGCPGQVSGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKLEDVKLTYKNQA 371

Query: 122 TKAS 124
            ++S
Sbjct: 372 AESS 375

[Close]
BLAST of CmaCh19G003530 vs. Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.7e-28
Identity = 68/122 (55.74%), Postives = 82/122 (67.21%), Query Frame = 1 

Query: 4   EEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCP 63
           EE GV NVTV +  F  T NGVRIK+WG+ SN FA N+ FQHI M  VKNPIIIDQ+YC 
Sbjct: 260 EEQGVDNVTVSNVDFMGTNNGVRIKTWGKDSNSFARNIVFQHINMKMVKNPIIIDQHYCL 319

Query: 64  HLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENHITK 123
           H K CP Q+S VKVS V Y+DI GTS TE+A+  DCS    CT + + D+ L   +   +
Sbjct: 320 H-KPCPKQESGVKVSNVRYEDIHGTSNTEVAVLLDCSKEKPCTGIVMDDVNLVSVHRPAQ 379

[Close]
BLAST of CmaCh19G003530 vs. Swiss-Prot
Match: QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 5.1e-20
Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = 1 

Query: 8   VHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKD 67
           V NV V  +T   T NGVRIK+W +  +G A N+ FQ IIM NV NPIII+Q+YC  ++ 
Sbjct: 304 VSNVVVNKATLIGTTNGVRIKTW-QGGHGMAKNIIFQDIIMKNVTNPIIINQDYCDRVEA 363

Query: 68  CPGQDSEVKVSEVTYKDIKGTSATEIAID--CSPTNHCTRLSLIDIKLT--YENHITKAS 124
           CP Q S V+VS V YK+I+GTS+  IA+   CS    C  +S+ ++KL    +  ++KAS
Sbjct: 364 CPEQKSAVQVSNVLYKNIQGTSSRPIAVKFVCSKNIPCRGISMQNVKLVDQTQQDVSKAS 422

[Close]
BLAST of CmaCh19G003530 vs. Swiss-Prot
Match: PGLR2_ARATH (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=2 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 5.1e-20
Identity = 53/113 (46.90%), Postives = 70/113 (61.95%), Query Frame = 1 

Query: 5   EDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPH 64
           E  V  VTV+      T NGVRIK+W     G A+N+ F+ I MDNV  P++IDQ YCP+
Sbjct: 297 EQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASNILFEDITMDNVSLPVLIDQEYCPY 356

Query: 65  LKDCPGQDSEVKVSEVTYKDIKGTSATEIAID--CSPTNHCTRLSLIDIKLTY 116
                G  S+VK+S+VT K IKGTSAT++A+   CS    CT ++L DI L +
Sbjct: 357 GHCKAGVPSQVKLSDVTIKGIKGTSATKVAVKLMCSKGVPCTNIALSDINLVH 409

[Close]
BLAST of CmaCh19G003530 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-19
Identity = 50/113 (44.25%), Postives = 74/113 (65.49%), Query Frame = 1 

Query: 5   EDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPH 64
           E+ V  + VK+ T T ++NGVRIK+W +   G A+ +HFQ I M++V  PI+IDQ YCP+
Sbjct: 215 EESVVGIYVKNCTITGSQNGVRIKTWPKSEPGEASEMHFQDITMNSVGTPILIDQGYCPY 274

Query: 65  LKDCPGQDSEVKVSEVTYKDIKGTSATEIAID--CSPTNHCTRLSLIDIKLTY 116
            +      S VK+S++++K+IKGTS T+ A+   CS +  C  + L DI LTY
Sbjct: 275 NQCTAEVPSSVKLSKISFKNIKGTSTTKEAVKLVCSKSFPCNGVELADIDLTY 327

[Close]
BLAST of CmaCh19G003530 vs. TrEMBL
Match: U5FM84_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03910g PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.2e-39
Identity = 81/124 (65.32%), Postives = 102/124 (82.26%), Query Frame = 1 

Query: 2   EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           E++E GV +VTVK++TFT T NG+RIK+WGRPSNGFATN+ FQH++M+NVKNPI+IDQNY
Sbjct: 255 ESQEAGVRDVTVKTTTFTGTENGLRIKTWGRPSNGFATNILFQHVVMNNVKNPILIDQNY 314

Query: 62  CPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENHI 121
           CP  K+CPGQ S VK+S+VTY+DI GTSATE+A+  DCS    CT + L D+KLTYEN  
Sbjct: 315 CPGKKNCPGQASGVKISDVTYQDIHGTSATELAVKFDCSRKYPCTGIKLQDVKLTYENKP 374

Query: 122 TKAS 124
            +AS
Sbjct: 375 AEAS 378

[Close]
BLAST of CmaCh19G003530 vs. TrEMBL
Match: A0A059AUR6_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H00254 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 5.8e-39
Identity = 81/122 (66.39%), Postives = 96/122 (78.69%), Query Frame = 1 

Query: 4   EEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCP 63
           +EDGV NVTVK+ TFT T+NGVRIKSWGRPSNGFA N+ FQH IM+NV+NPIIIDQNYCP
Sbjct: 227 QEDGVQNVTVKTVTFTGTQNGVRIKSWGRPSNGFARNILFQHAIMNNVQNPIIIDQNYCP 286

Query: 64  HLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENHITK 123
           H   CPGQ S V+VS+VTY+DI GTSAT +A+  DCS    CT + + D+KLTY N +  
Sbjct: 287 HNSGCPGQASGVRVSDVTYQDIHGTSATSVAVKFDCSSKYPCTGIRMQDVKLTYRNKVAT 346

[Close]
BLAST of CmaCh19G003530 vs. TrEMBL
Match: B9N8R2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03870g PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 7.6e-39
Identity = 79/124 (63.71%), Postives = 102/124 (82.26%), Query Frame = 1 

Query: 2   EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           +++E GV +VTVK++TFT T NG+RIK+WGRPSNGFATN+ FQH++M+NVKNPI+IDQNY
Sbjct: 248 DSQEAGVRDVTVKTTTFTGTENGLRIKTWGRPSNGFATNILFQHVVMNNVKNPILIDQNY 307

Query: 62  CPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENHI 121
           CP  K+CPGQ S VK+S+VTY+DI GTSATE+A+  DCS    CT + L D+KLTY+N  
Sbjct: 308 CPGNKNCPGQASGVKISDVTYQDIHGTSATELAVKFDCSRKYPCTGIKLEDVKLTYDNKP 367

Query: 122 TKAS 124
            +AS
Sbjct: 368 AEAS 371

[Close]
BLAST of CmaCh19G003530 vs. TrEMBL
Match: A0A0A0KN91_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409610 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.3e-38
Identity = 82/124 (66.13%), Postives = 98/124 (79.03%), Query Frame = 1 

Query: 2   EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           + EE GV NVTV ++TFT T+NGVRIKSWGRPSN FA  + FQHI   NV NPI+IDQNY
Sbjct: 250 QVEEAGVENVTVTTATFTGTQNGVRIKSWGRPSNAFANKILFQHIRFYNVNNPILIDQNY 309

Query: 62  CPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENHI 121
           CP+ + CPGQ S VKVS+VTY+D+ GTSA+E+AI  DCSPTN CT ++L DI+LTY N I
Sbjct: 310 CPNNQGCPGQASGVKVSDVTYQDVNGTSASEVAINFDCSPTNPCTGITLEDIQLTYNNQI 369

Query: 122 TKAS 124
            KAS
Sbjct: 370 PKAS 373

[Close]
BLAST of CmaCh19G003530 vs. TrEMBL
Match: A0A0A0LCF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G634290 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.9e-38
Identity = 76/124 (61.29%), Postives = 100/124 (80.65%), Query Frame = 1 

Query: 2   EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           + +EDGV NVTVK+  F+RT+NGVRIK+WG+PSNGFA N+ FQHI+MDNV+NPI+IDQNY
Sbjct: 11  DLQEDGVQNVTVKNVVFSRTQNGVRIKAWGKPSNGFARNILFQHIVMDNVQNPIVIDQNY 70

Query: 62  CPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENHI 121
           CP  K CP + S VK+++VTY+DI GTSAT++A+  DCSP N C R+ L ++KLTY N  
Sbjct: 71  CPSHKGCPEKASGVKINDVTYQDIHGTSATKVAVKFDCSPINPCVRIKLENVKLTYMNQT 130

Query: 122 TKAS 124
            +A+
Sbjct: 131 AQAT 134

[Close]
BLAST of CmaCh19G003530 vs. TAIR10
Match: AT2G43880.1 (AT2G43880.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 153.3 bits (386), Expect = 9.8e-38
Identity = 75/115 (65.22%), Postives = 91/115 (79.13%), Query Frame = 1 

Query: 3   AEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYC 62
           A E+GV NVTV SS FT+T+NGVRIK+W RPS GF  NV F+++IM+NV+NP+IIDQNYC
Sbjct: 254 ANEEGVQNVTVTSSVFTKTQNGVRIKTWARPSRGFVNNVVFRNLIMNNVENPVIIDQNYC 313

Query: 63  PHLKDCPGQDSEVKVSEVTYKDIKGTSATEIA--IDCSPTNHCTRLSLIDIKLTY 116
           P+ K CP Q S VK+S VT+ +IKGTS T IA  +DCS +NHCT L L DIKLTY
Sbjct: 314 PNGKGCPRQSSGVKISGVTFANIKGTSTTPIAMKLDCSGSNHCTGLRLQDIKLTY 368

[Close]
BLAST of CmaCh19G003530 vs. TAIR10
Match: AT3G59850.1 (AT3G59850.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 151.0 bits (380), Expect = 4.8e-37
Identity = 70/118 (59.32%), Postives = 90/118 (76.27%), Query Frame = 1 

Query: 2   EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           E+ E GV N+TVK++TFT T NGVRIKSW RPSNGFA N+ FQH +M+NV+NPI+IDQNY
Sbjct: 247 ESVEVGVQNITVKTATFTGTENGVRIKSWARPSNGFAKNIRFQHCVMNNVQNPIVIDQNY 306

Query: 62  CPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYEN 118
           CP  ++CP Q S +K+S+V + DI GTSATE+ +  DCS    CT + + D+KLTY N
Sbjct: 307 CPGNENCPNQVSGIKISDVMFFDIHGTSATEVGVKLDCSSKKPCTGIRIQDVKLTYRN 364

[Close]
BLAST of CmaCh19G003530 vs. TAIR10
Match: AT2G43870.1 (AT2G43870.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 147.1 bits (370), Expect = 7.0e-36
Identity = 72/118 (61.02%), Postives = 89/118 (75.42%), Query Frame = 1 

Query: 2   EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           ++ E GV NVTVK+ TFT T NGVRIKSW RPS+GFA N+ FQH +M+NV+NPIIIDQNY
Sbjct: 245 DSVESGVQNVTVKTVTFTGTDNGVRIKSWARPSSGFAKNIRFQHCVMNNVENPIIIDQNY 304

Query: 62  CPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYEN 118
           CP   DCP Q S +K+S+V + DI GTSATE+ +  DCS    CT + L D+KLTY+N
Sbjct: 305 CPD-HDCPRQVSGIKISDVLFVDIHGTSATEVGVKLDCSSKKPCTGIRLEDVKLTYQN 361

[Close]
BLAST of CmaCh19G003530 vs. TAIR10
Match: AT1G05650.1 (AT1G05650.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 146.0 bits (367), Expect = 1.6e-35
Identity = 72/116 (62.07%), Postives = 90/116 (77.59%), Query Frame = 1 

Query: 2   EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           +  EDGV NVTV SS FT ++NGVRIKSW RPS GF  NV FQ++IM NV+NPIIIDQNY
Sbjct: 250 QLNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQNLIMRNVQNPIIIDQNY 309

Query: 62  CPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAID--CSPTNHCTRLSLIDIKLTY 116
           CP  + CP + S VK+++VTYK+I+GTSAT+ A+   CS +N CT ++L DIKLTY
Sbjct: 310 CPSNQGCPTEHSGVKITQVTYKNIQGTSATQEAMKLVCSKSNPCTGITLQDIKLTY 365

[Close]
BLAST of CmaCh19G003530 vs. TAIR10
Match: AT1G05660.1 (AT1G05660.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 145.6 bits (366), Expect = 2.0e-35
Identity = 72/116 (62.07%), Postives = 90/116 (77.59%), Query Frame = 1 

Query: 2   EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           E +EDGV NVTV SS FT ++NGVRIKSW RPSNGF   V FQ ++M NV+NPIIIDQNY
Sbjct: 250 ELKEDGVENVTVSSSVFTGSQNGVRIKSWARPSNGFVRTVFFQDLVMKNVENPIIIDQNY 309

Query: 62  CPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAID--CSPTNHCTRLSLIDIKLTY 116
           CP  + CP + S VK+S+VTYK+I+GTSAT+ A+   CS ++ CT ++L DIKLTY
Sbjct: 310 CPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTY 365

[Close]
BLAST of CmaCh19G003530 vs. NCBI nr
Match: gi|566211233|ref|XP_006372690.1| (hypothetical protein POPTR_0017s03910g [Populus trichocarpa])

HSP 1 Score: 170.6 bits (431), Expect = 1.7e-39
Identity = 81/124 (65.32%), Postives = 102/124 (82.26%), Query Frame = 1 

Query: 2   EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           E++E GV +VTVK++TFT T NG+RIK+WGRPSNGFATN+ FQH++M+NVKNPI+IDQNY
Sbjct: 255 ESQEAGVRDVTVKTTTFTGTENGLRIKTWGRPSNGFATNILFQHVVMNNVKNPILIDQNY 314

Query: 62  CPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENHI 121
           CP  K+CPGQ S VK+S+VTY+DI GTSATE+A+  DCS    CT + L D+KLTYEN  
Sbjct: 315 CPGKKNCPGQASGVKISDVTYQDIHGTSATELAVKFDCSRKYPCTGIKLQDVKLTYENKP 374

Query: 122 TKAS 124
            +AS
Sbjct: 375 AEAS 378

[Close]
BLAST of CmaCh19G003530 vs. NCBI nr
Match: gi|629091489|gb|KCW57484.1| (hypothetical protein EUGRSUZ_H00254, partial [Eucalyptus grandis])

HSP 1 Score: 168.3 bits (425), Expect = 8.3e-39
Identity = 81/122 (66.39%), Postives = 96/122 (78.69%), Query Frame = 1 

Query: 4   EEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCP 63
           +EDGV NVTVK+ TFT T+NGVRIKSWGRPSNGFA N+ FQH IM+NV+NPIIIDQNYCP
Sbjct: 227 QEDGVQNVTVKTVTFTGTQNGVRIKSWGRPSNGFARNILFQHAIMNNVQNPIIIDQNYCP 286

Query: 64  HLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENHITK 123
           H   CPGQ S V+VS+VTY+DI GTSAT +A+  DCS    CT + + D+KLTY N +  
Sbjct: 287 HNSGCPGQASGVRVSDVTYQDIHGTSATSVAVKFDCSSKYPCTGIRMQDVKLTYRNKVAT 346

[Close]
BLAST of CmaCh19G003530 vs. NCBI nr
Match: gi|702452172|ref|XP_010025870.1| (PREDICTED: polygalacturonase-like [Eucalyptus grandis])

HSP 1 Score: 168.3 bits (425), Expect = 8.3e-39
Identity = 81/122 (66.39%), Postives = 96/122 (78.69%), Query Frame = 1 

Query: 4   EEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCP 63
           +EDGV NVTVK+ TFT T+NGVRIKSWGRPSNGFA N+ FQH IM+NV+NPIIIDQNYCP
Sbjct: 346 QEDGVQNVTVKTVTFTGTQNGVRIKSWGRPSNGFARNILFQHAIMNNVQNPIIIDQNYCP 405

Query: 64  HLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENHITK 123
           H   CPGQ S V+VS+VTY+DI GTSAT +A+  DCS    CT + + D+KLTY N +  
Sbjct: 406 HNSGCPGQASGVRVSDVTYQDIHGTSATSVAVKFDCSSKYPCTGIRMQDVKLTYRNKVAT 465

[Close]
BLAST of CmaCh19G003530 vs. NCBI nr
Match: gi|566211225|ref|XP_006372686.1| (hypothetical protein POPTR_0017s03870g [Populus trichocarpa])

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-38
Identity = 79/124 (63.71%), Postives = 102/124 (82.26%), Query Frame = 1 

Query: 2   EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           +++E GV +VTVK++TFT T NG+RIK+WGRPSNGFATN+ FQH++M+NVKNPI+IDQNY
Sbjct: 248 DSQEAGVRDVTVKTTTFTGTENGLRIKTWGRPSNGFATNILFQHVVMNNVKNPILIDQNY 307

Query: 62  CPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENHI 121
           CP  K+CPGQ S VK+S+VTY+DI GTSATE+A+  DCS    CT + L D+KLTY+N  
Sbjct: 308 CPGNKNCPGQASGVKISDVTYQDIHGTSATELAVKFDCSRKYPCTGIKLEDVKLTYDNKP 367

Query: 122 TKAS 124
            +AS
Sbjct: 368 AEAS 371

[Close]
BLAST of CmaCh19G003530 vs. NCBI nr
Match: gi|449445220|ref|XP_004140371.1| (PREDICTED: polygalacturonase [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 1.8e-38
Identity = 82/124 (66.13%), Postives = 98/124 (79.03%), Query Frame = 1 

Query: 2   EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           + EE GV NVTV ++TFT T+NGVRIKSWGRPSN FA  + FQHI   NV NPI+IDQNY
Sbjct: 250 QVEEAGVENVTVTTATFTGTQNGVRIKSWGRPSNAFANKILFQHIRFYNVNNPILIDQNY 309

Query: 62  CPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENHI 121
           CP+ + CPGQ S VKVS+VTY+D+ GTSA+E+AI  DCSPTN CT ++L DI+LTY N I
Sbjct: 310 CPNNQGCPGQASGVKVSDVTYQDVNGTSASEVAINFDCSPTNPCTGITLEDIQLTYNNQI 369

Query: 122 TKAS 124
            KAS
Sbjct: 370 PKAS 373

The following BLAST results are available for this feature:
BLAST of CmaCh19G003530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR_PRUPE4.1e-3861.29Polygalacturonase OS=Prunus persica PE=2 SV=1[more]
PGLR6_ARATH1.7e-2855.74Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 S... [more]
QRT2_ARATH5.1e-2046.67Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2[more]
PGLR2_ARATH5.1e-2046.90Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=2 SV=... [more]
PGLR_OENOR1.5e-1944.25Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1[more]
BLAST of CmaCh19G003530 vs. TrEMBL
Match NameE-valueIdentityDescription
U5FM84_POPTR1.2e-3965.32Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03910g PE=3 SV=1[more]
A0A059AUR6_EUCGR5.8e-3966.39Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H00254 PE=3 ... [more]
B9N8R2_POPTR7.6e-3963.71Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03870g PE=3 SV=1[more]
A0A0A0KN91_CUCSA1.3e-3866.13Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409610 PE=3 SV=1[more]
A0A0A0LCF2_CUCSA2.9e-3861.29Uncharacterized protein OS=Cucumis sativus GN=Csa_3G634290 PE=3 SV=1[more]
BLAST of CmaCh19G003530 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G43880.19.8e-3865.22 Pectin lyase-like superfamily protein[more]
AT3G59850.14.8e-3759.32 Pectin lyase-like superfamily protein[more]
AT2G43870.17.0e-3661.02 Pectin lyase-like superfamily protein[more]
AT1G05650.11.6e-3562.07 Pectin lyase-like superfamily protein[more]
AT1G05660.12.0e-3562.07 Pectin lyase-like superfamily protein[more]
BLAST of CmaCh19G003530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|566211233|ref|XP_006372690.1|1.7e-3965.32hypothetical protein POPTR_0017s03910g [Populus trichocarpa][more]
gi|629091489|gb|KCW57484.1|8.3e-3966.39hypothetical protein EUGRSUZ_H00254, partial [Eucalyptus grandis][more]
gi|702452172|ref|XP_010025870.1|8.3e-3966.39PREDICTED: polygalacturonase-like [Eucalyptus grandis][more]
gi|566211225|ref|XP_006372686.1|1.1e-3863.71hypothetical protein POPTR_0017s03870g [Populus trichocarpa][more]
gi|449445220|ref|XP_004140371.1|1.8e-3866.13PREDICTED: polygalacturonase [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000743Glyco_hydro_28
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G003530.1CmaCh19G003530.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 5..117
score: 7.8
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 6..117
score: 1.79
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 4..118
score: 3.7
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 2..118
score: 1.1
NoneNo IPR availablePANTHERPTHR31375:SF2POLYGALACTURONASE/PECTINASEcoord: 2..118
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh19G003530CmaCh00G001030Cucurbita maxima (Rimu)cmacmaB017
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G003530Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G003530Cucurbita moschata (Rifu)cmacmoB510
CmaCh19G003530Cucurbita moschata (Rifu)cmacmoB513
CmaCh19G003530Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G003530Watermelon (97103) v2cmawmbB560