CmaCh19G003460 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G003460
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTransposon Ty1-H Gag-Pol polyprotein
LocationCma_Chr19 : 3624585 .. 3625264 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTAAAAATGGCGTTTTTACATGGGGATCTAGATGAGGAGATATATATGCAACAACCAGAAGGGTTTGCAGCTCCAGGCAAGGAGCACATGGTGTGTAAGCTCAATAAGAGCTTGTATGGATTGAAACAAGCACCGAGACAATGGTACAAGAAGTTTGACTCCTTCATGTGCAAGAGTGGTTTCCACAAGAGTGAAAAGATCAGTGTTTCTACCTCAAGAAATACACTGATTCTTATGTGTTTCTACACCTGTATGTGGATGATATACTAATTGCTGGATCAAGTATGAGGGAGATAAACCACCTGAAGGCAAGCTTGTCTTCAGTATGTGAGATGAAATATTTGGGTGCAGCGAAGCAGATTCTTGGGATGAGGATTTCTCGAGATTTATCTGCTGGCACATTAAATCTATCCCAAGAGCAGTACATTGAGAAGGCATTGTCCAAATTCAAGATGAATGACGCTAAACCCAAGACTACCCCCTTGGCAAATCATATTAAATTGTCAAAGGGGCAATCTCCCAAGACAGTTGAGGACCGTGAGCACATGGCATCAGTTTCGTACGCTTCTGCAGTTGGGAGTTTGATGTATGCTATGGTCTGCACTAGACCTGACATAACACATGCAGTGGGAGTTGTTAGCAAGTTCATGGCAAATCCAGGGAAAGAACATTGA

mRNA sequence

ATGGATGTAAAAATGGCGTTTTTACATGGGGATCTAGATGAGGAGATATATATGCAACAACCAGAAGGGTTTGCAGCTCCAGGCAAGGAGCACATGGTGTGTAAGCTCAATAAGAGCTTGTATGGATTGAAACAAGCACCGAGACAATGGTACAAGAAGTTTGACTCCTTCATGTGCAAGAGTGGTTTCCACAAGAGTGAAAAGATCAGTGTTTCTACCTCAAGAAATACACTGATTCTTATGTGTTTCTACACCTCGAAGCAGATTCTTGGGATGAGGATTTCTCGAGATTTATCTGCTGGCACATTAAATCTATCCCAAGAGCAGTACATTGAGAAGGCATTGTCCAAATTCAAGATGAATGACGCTAAACCCAAGACTACCCCCTTGGCAAATCATATTAAATTGTCAAAGGGGCAATCTCCCAAGACAGTTGAGGACCGTGAGCACATGGCATCAGTTTCGTACGCTTCTGCAGTTGGGAGTTTGATGTATGCTATGGTCTGCACTAGACCTGACATAACACATGCAGTGGGAGTTGTTAGCAAGTTCATGGCAAATCCAGGGAAAGAACATTGA

Coding sequence (CDS)

ATGGATGTAAAAATGGCGTTTTTACATGGGGATCTAGATGAGGAGATATATATGCAACAACCAGAAGGGTTTGCAGCTCCAGGCAAGGAGCACATGGTGTGTAAGCTCAATAAGAGCTTGTATGGATTGAAACAAGCACCGAGACAATGGTACAAGAAGTTTGACTCCTTCATGTGCAAGAGTGGTTTCCACAAGAGTGAAAAGATCAGTGTTTCTACCTCAAGAAATACACTGATTCTTATGTGTTTCTACACCTCGAAGCAGATTCTTGGGATGAGGATTTCTCGAGATTTATCTGCTGGCACATTAAATCTATCCCAAGAGCAGTACATTGAGAAGGCATTGTCCAAATTCAAGATGAATGACGCTAAACCCAAGACTACCCCCTTGGCAAATCATATTAAATTGTCAAAGGGGCAATCTCCCAAGACAGTTGAGGACCGTGAGCACATGGCATCAGTTTCGTACGCTTCTGCAGTTGGGAGTTTGATGTATGCTATGGTCTGCACTAGACCTGACATAACACATGCAGTGGGAGTTGTTAGCAAGTTCATGGCAAATCCAGGGAAAGAACATTGA

Protein sequence

MDVKMAFLHGDLDEEIYMQQPEGFAAPGKEHMVCKLNKSLYGLKQAPRQWYKKFDSFMCKSGFHKSEKISVSTSRNTLILMCFYTSKQILGMRISRDLSAGTLNLSQEQYIEKALSKFKMNDAKPKTTPLANHIKLSKGQSPKTVEDREHMASVSYASAVGSLMYAMVCTRPDITHAVGVVSKFMANPGKEH
Homology
[Close]
BLAST of CmaCh19G003460 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.3e-59
Identity = 123/227 (54.19%), Postives = 149/227 (65.64%), Query Frame = 1 

Query: 1    MDVKMAFLHGDLDEEIYMQQPEGFAAPGKEHMVCKLNKSLYGLKQAPRQWYKKFDSFMCK 60
            +DVK AFLHGDL+EEIYM+QPEGF   GK+HMVCKLNKSLYGLKQAPRQWY KFDSFM  
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   SGFHKSEKISV----STSRNTLILMCFYT------------------------------- 120
              + K+           S N  I++  Y                                
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGP 1040

Query: 121  SKQILGMRISRDLSAGTLNLSQEQYIEKALSKFKMNDAKPKTTPLANHIKLSKGQSPKTV 180
            ++QILGM+I R+ ++  L LSQE+YIE+ L +F M +AKP +TPLA H+KLSK   P TV
Sbjct: 1041 AQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTV 1100

Query: 181  EDREHMASVSYASAVGSLMYAMVCTRPDITHAVGVVSKFMANPGKEH 193
            E++ +MA V Y+SAVGSLMYAMVCTRPDI HAVGVVS+F+ NPGKEH
Sbjct: 1101 EEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEH 1147

[Close]
BLAST of CmaCh19G003460 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-14
Identity = 66/231 (28.57%), Postives = 103/231 (44.59%), Query Frame = 1 

Query: 1    MDVKMAFLHGDLDEEIYMQQPEGFAAPGKEHMVCKLNKSLYGLKQAPRQWYKKFDSFMCK 60
            MDVK AFL+G L EEIYM+ P+G +       VCKLNK++YGLKQA R W++ F+     
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQGISCNSDN--VCKLNKAIYGLKQAARCWFEVFE----- 1060

Query: 61   SGFHKSEKISVSTSRNTLILMCFYTSKQILGMRISRDLSAGTLNLSQEQYIEKAL-SKFK 120
                + E ++ S  R   IL     ++ I  +    D+   T ++++    ++ L  KF+
Sbjct: 1061 QALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFR 1120

Query: 121  MNDAKPKTTPLANHIKLSKGQSPKTVEDREHMASVSYASAVGS----------------- 180
            M D         N IK   G   +  ED+ +++  +Y   + S                 
Sbjct: 1121 MTD--------LNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSK 1180

Query: 181  ----------------------LMYAMVCTRPDITHAVGVVSKFMANPGKE 192
                                  LMY M+CTRPD+T AV ++S++ +    E
Sbjct: 1181 INYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSE 1216

[Close]
BLAST of CmaCh19G003460 vs. Swiss-Prot
Match: YD11B_YEAST (Transposon Ty1-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-DR1 PE=3 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 4.5e-07
Identity = 33/118 (27.97%), Postives = 61/118 (51.69%), Query Frame = 1 

Query: 1    MDVKMAFLHGDLDEEIYMQQPEGFAAPGKEHMVCKLNKSLYGLKQAPRQWYKKFDSFMCK 60
            +D+  A+L+ D+ EE+Y++ P      G    + +L KSLYGLKQ+   WY+   S++ K
Sbjct: 1345 LDISSAYLYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIK 1404

Query: 61   SGFHKSEKISVSTSRNTLILMCFYTSKQILGMRISRDLSAG--TLNLSQEQYIEKALS 117
                +  +      +N+ + +C +    IL    S+DL+A    +   ++QY  K ++
Sbjct: 1405 QCGMEEVRGWSCVFKNSQVTICLFVDDMIL---FSKDLNANKKIITTLKKQYDTKIIN 1456

[Close]
BLAST of CmaCh19G003460 vs. Swiss-Prot
Match: YM12B_YEAST (Transposon Ty1-ML2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-ML2 PE=3 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-06
Identity = 39/145 (26.90%), Postives = 72/145 (49.66%), Query Frame = 1 

Query: 1    MDVKMAFLHGDLDEEIYMQQPEGFAAPGKEHMVCKLNKSLYGLKQAPRQWYKKFDSFMCK 60
            +D+  A+L+ D+ EE+Y++ P      G    + +L KSLYGLKQ+   WY+   S++ K
Sbjct: 1345 LDISSAYLYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIK 1404

Query: 61   SGFHKSEKISVSTSRNTLILMCFYTSKQILGMRISRDLSAG--TLNLSQEQYIEKALSKF 120
                +  +      +N+ + +C +    IL    S+DL+A    +   ++QY  K ++  
Sbjct: 1405 QCGMEEVRGWSCVFKNSQVTICLFVDDMIL---FSKDLNANKKIITTLKKQYDTKIIN-L 1464

Query: 121  KMNDAKPKTTPLANHIKLSKGQSPK 144
              +D + +   L   IK  +G+  K
Sbjct: 1465 GESDNEIQYDILGLEIKYQRGKYMK 1482

[Close]
BLAST of CmaCh19G003460 vs. Swiss-Prot
Match: YM11B_YEAST (Transposon Ty1-ML1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-ML1 PE=3 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-06
Identity = 39/145 (26.90%), Postives = 72/145 (49.66%), Query Frame = 1 

Query: 1    MDVKMAFLHGDLDEEIYMQQPEGFAAPGKEHMVCKLNKSLYGLKQAPRQWYKKFDSFMCK 60
            +D+  A+L+ D+ EE+Y++ P      G    + +L KSLYGLKQ+   WY+   S++ K
Sbjct: 1345 LDISSAYLYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIK 1404

Query: 61   SGFHKSEKISVSTSRNTLILMCFYTSKQILGMRISRDLSAG--TLNLSQEQYIEKALSKF 120
                +  +      +N+ + +C +    IL    S+DL+A    +   ++QY  K ++  
Sbjct: 1405 QCGMEEVRGWSCVFKNSQVTICLFVDDMIL---FSKDLNANKKIITTLKKQYDTKIIN-L 1464

Query: 121  KMNDAKPKTTPLANHIKLSKGQSPK 144
              +D + +   L   IK  +G+  K
Sbjct: 1465 GESDNEIQYDILGLEIKYQRGKYMK 1482

[Close]
BLAST of CmaCh19G003460 vs. TrEMBL
Match: A5BPB3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034935 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.0e-63
Identity = 123/197 (62.44%), Postives = 151/197 (76.65%), Query Frame = 1 

Query: 1   MDVKMAFLHGDLDEEIYMQQPEGFAAPGKEHMVCKLNKSLYGLKQAPRQWYKKFDSFMCK 60
           +DVK AFLHGDL+E++YM QPEGF   G+E++VCKL KSLYGLKQAPRQWYKKFD+FM +
Sbjct: 761 LDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHR 820

Query: 61  SGFHKSEKISVSTSRNTLILMCFY-----TSKQILGMRISRDLSAGTLNLSQEQYIEKAL 120
            GF +   I    +    +   F       +KQILGMRI RD + GTL LSQ +Y++K L
Sbjct: 821 IGFKRWSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVL 880

Query: 121 SKFKMNDAKPKTTPLANHIKLSKGQSPKTVEDREHMASVSYASAVGSLMYAMVCTRPDIT 180
           S+F MN+AKP +TPL +H KLSK QSPKT E+R+HM+ V YASA+GSLMYAMVCTRPDI 
Sbjct: 881 SRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIA 940

Query: 181 HAVGVVSKFMANPGKEH 193
           HAVGVVS+FM+ PGK+H
Sbjct: 941 HAVGVVSRFMSRPGKQH 957

[Close]
BLAST of CmaCh19G003460 vs. TrEMBL
Match: A5B0V5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008497 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.0e-63
Identity = 122/197 (61.93%), Postives = 154/197 (78.17%), Query Frame = 1 

Query: 1   MDVKMAFLHGDLDEEIYMQQPEGFAAPGKEHMVCKLNKSLYGLKQAPRQWYKKFDSFMCK 60
           +DVK AFLHGDL+E++YM QPEGF   G+E++VCKL KSLYGLKQ+PRQWYKKFD+FM +
Sbjct: 784 LDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQSPRQWYKKFDNFMHR 843

Query: 61  SGFHKSEKIS-VSTSRNTL----ILMCFYTSKQILGMRISRDLSAGTLNLSQEQYIEKAL 120
            GF +   I  ++  +  L    ++     +KQILGMRI RD + GTL LSQ +Y++K L
Sbjct: 844 IGFKRWSDIEKINNMKKQLSKQFVMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVL 903

Query: 121 SKFKMNDAKPKTTPLANHIKLSKGQSPKTVEDREHMASVSYASAVGSLMYAMVCTRPDIT 180
           S+F MN+AKP +TPL +H KLSK QSPKT E+R+HM+ V YASA+GSLMYAMVCTRPDI 
Sbjct: 904 SRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIA 963

Query: 181 HAVGVVSKFMANPGKEH 193
           HAVGVVS+FM+ PGK+H
Sbjct: 964 HAVGVVSRFMSKPGKQH 980

[Close]
BLAST of CmaCh19G003460 vs. TrEMBL
Match: A5B541_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040876 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 5.3e-63
Identity = 123/197 (62.44%), Postives = 151/197 (76.65%), Query Frame = 1 

Query: 1   MDVKMAFLHGDLDEEIYMQQPEGFAAPGKEHMVCKLNKSLYGLKQAPRQWYKKFDSFMCK 60
           +DVK AFLHGDL+E++YM QPEGF   G+E++VCKL KSLYGLKQAPRQWYKKFD+FM +
Sbjct: 465 LDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHR 524

Query: 61  SGFHKSEKISVSTSRNTLILMCFY-----TSKQILGMRISRDLSAGTLNLSQEQYIEKAL 120
            GF +   I    +    +   F       +KQILGMRI RD + GTL LSQ +Y++K L
Sbjct: 525 IGFKRWXDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVL 584

Query: 121 SKFKMNDAKPKTTPLANHIKLSKGQSPKTVEDREHMASVSYASAVGSLMYAMVCTRPDIT 180
           S+F MN+AKP +TPL +H KLSK QSPKT E+R+HM+ V YASA+GSLMYAMVCTRPDI 
Sbjct: 585 SRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIA 644

Query: 181 HAVGVVSKFMANPGKEH 193
           HAVGVVS+FM+ PGK+H
Sbjct: 645 HAVGVVSRFMSRPGKQH 661

[Close]
BLAST of CmaCh19G003460 vs. TrEMBL
Match: A5BGX3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003944 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.2e-62
Identity = 122/198 (61.62%), Postives = 150/198 (75.76%), Query Frame = 1 

Query: 1    MDVKMAFLHGDLDEEIYMQQPEGFAAPGKEHMVCKLNKSLYGLKQAPRQWYKKFDSFMCK 60
            +DVK AFLHGDL+E++YM QPEGF   G+E++VCKL KSLYGLKQAPRQWYKKFD+FM +
Sbjct: 869  LDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHR 928

Query: 61   SGFHKSEKISVSTSRNTLILMCFYT------SKQILGMRISRDLSAGTLNLSQEQYIEKA 120
             GF + E              C++       +KQILGMRI RD + GTL LSQ +Y++K 
Sbjct: 929  IGFKRCEADHC----------CYFAMKDLGXAKQILGMRIIRDKANGTLKLSQSEYVKKV 988

Query: 121  LSKFKMNDAKPKTTPLANHIKLSKGQSPKTVEDREHMASVSYASAVGSLMYAMVCTRPDI 180
            LS+F MN+AKP +TPL +H KLSK QSPKT E+R+HM+ V YASA+GSLMY MVCTRPDI
Sbjct: 989  LSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYTMVCTRPDI 1048

Query: 181  THAVGVVSKFMANPGKEH 193
             HAVGVVS+FM+ PGK+H
Sbjct: 1049 AHAVGVVSRFMSRPGKQH 1056

[Close]
BLAST of CmaCh19G003460 vs. TrEMBL
Match: A5CAL2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043102 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.0e-62
Identity = 124/202 (61.39%), Postives = 154/202 (76.24%), Query Frame = 1 

Query: 1   MDVKMAFLHGDLDEEIYMQQPEGFAAPGKEHMVCKLNKSLYGLKQAPRQWYKKFDSFMCK 60
           +DVK AFLHGDL+E++YM QPEGF   G+E++VCKL KSLYGLKQAPRQWYKKFD+FM +
Sbjct: 194 LDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHR 253

Query: 61  SGFHKSEKISV----STSRNTLILMCFY------TSKQILGMRISRDLSAGTLNLSQEQY 120
            GF + E        S   + +IL+ ++       +KQILGMRI RD + GTL LSQ +Y
Sbjct: 254 IGFKRCEADHCCYFKSFDNSYIILLLYFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEY 313

Query: 121 IEKALSKFKMNDAKPKTTPLANHIKLSKGQSPKTVEDREHMASVSYASAVGSLMYAMVCT 180
            +K L++F MN+AKP +TPL +H KLSK QSPKT E+R+HM+ V YASA+GSLMYAMVCT
Sbjct: 314 AKKVLNRFNMNEAKPISTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCT 373

Query: 181 RPDITHAVGVVSKFMANPGKEH 193
           RPDI HAVGVVSKFM+ P K+H
Sbjct: 374 RPDIAHAVGVVSKFMSRPVKQH 395

[Close]
BLAST of CmaCh19G003460 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 70.9 bits (172), Expect = 9.9e-13
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 1 

Query: 1   MDVKMAFLHGDLDEEIYMQQPEGFAAPGKEHM----VCKLNKSLYGLKQAPRQWYKKFDS 60
           +D+  AFL+GDLDEEIYM+ P G+AA   + +    VC L KS+YGLKQA RQW+ KF  
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  FMCKSGFHKS 67
            +   GF +S
Sbjct: 253 TLIGFGFVQS 262

[Close]
BLAST of CmaCh19G003460 vs. NCBI nr
Match: gi|147798867|emb|CAN65867.1| (hypothetical protein VITISV_034935 [Vitis vinifera])

HSP 1 Score: 249.2 bits (635), Expect = 5.8e-63
Identity = 123/197 (62.44%), Postives = 151/197 (76.65%), Query Frame = 1 

Query: 1   MDVKMAFLHGDLDEEIYMQQPEGFAAPGKEHMVCKLNKSLYGLKQAPRQWYKKFDSFMCK 60
           +DVK AFLHGDL+E++YM QPEGF   G+E++VCKL KSLYGLKQAPRQWYKKFD+FM +
Sbjct: 761 LDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHR 820

Query: 61  SGFHKSEKISVSTSRNTLILMCFY-----TSKQILGMRISRDLSAGTLNLSQEQYIEKAL 120
            GF +   I    +    +   F       +KQILGMRI RD + GTL LSQ +Y++K L
Sbjct: 821 IGFKRWSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVL 880

Query: 121 SKFKMNDAKPKTTPLANHIKLSKGQSPKTVEDREHMASVSYASAVGSLMYAMVCTRPDIT 180
           S+F MN+AKP +TPL +H KLSK QSPKT E+R+HM+ V YASA+GSLMYAMVCTRPDI 
Sbjct: 881 SRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIA 940

Query: 181 HAVGVVSKFMANPGKEH 193
           HAVGVVS+FM+ PGK+H
Sbjct: 941 HAVGVVSRFMSRPGKQH 957

[Close]
BLAST of CmaCh19G003460 vs. NCBI nr
Match: gi|147778396|emb|CAN76274.1| (hypothetical protein VITISV_008497 [Vitis vinifera])

HSP 1 Score: 249.2 bits (635), Expect = 5.8e-63
Identity = 122/197 (61.93%), Postives = 154/197 (78.17%), Query Frame = 1 

Query: 1   MDVKMAFLHGDLDEEIYMQQPEGFAAPGKEHMVCKLNKSLYGLKQAPRQWYKKFDSFMCK 60
           +DVK AFLHGDL+E++YM QPEGF   G+E++VCKL KSLYGLKQ+PRQWYKKFD+FM +
Sbjct: 784 LDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQSPRQWYKKFDNFMHR 843

Query: 61  SGFHKSEKIS-VSTSRNTL----ILMCFYTSKQILGMRISRDLSAGTLNLSQEQYIEKAL 120
            GF +   I  ++  +  L    ++     +KQILGMRI RD + GTL LSQ +Y++K L
Sbjct: 844 IGFKRWSDIEKINNMKKQLSKQFVMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVL 903

Query: 121 SKFKMNDAKPKTTPLANHIKLSKGQSPKTVEDREHMASVSYASAVGSLMYAMVCTRPDIT 180
           S+F MN+AKP +TPL +H KLSK QSPKT E+R+HM+ V YASA+GSLMYAMVCTRPDI 
Sbjct: 904 SRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIA 963

Query: 181 HAVGVVSKFMANPGKEH 193
           HAVGVVS+FM+ PGK+H
Sbjct: 964 HAVGVVSRFMSKPGKQH 980

[Close]
BLAST of CmaCh19G003460 vs. NCBI nr
Match: gi|147770293|emb|CAN65235.1| (hypothetical protein VITISV_040876 [Vitis vinifera])

HSP 1 Score: 248.8 bits (634), Expect = 7.5e-63
Identity = 123/197 (62.44%), Postives = 151/197 (76.65%), Query Frame = 1 

Query: 1   MDVKMAFLHGDLDEEIYMQQPEGFAAPGKEHMVCKLNKSLYGLKQAPRQWYKKFDSFMCK 60
           +DVK AFLHGDL+E++YM QPEGF   G+E++VCKL KSLYGLKQAPRQWYKKFD+FM +
Sbjct: 465 LDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHR 524

Query: 61  SGFHKSEKISVSTSRNTLILMCFY-----TSKQILGMRISRDLSAGTLNLSQEQYIEKAL 120
            GF +   I    +    +   F       +KQILGMRI RD + GTL LSQ +Y++K L
Sbjct: 525 IGFKRWXDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVL 584

Query: 121 SKFKMNDAKPKTTPLANHIKLSKGQSPKTVEDREHMASVSYASAVGSLMYAMVCTRPDIT 180
           S+F MN+AKP +TPL +H KLSK QSPKT E+R+HM+ V YASA+GSLMYAMVCTRPDI 
Sbjct: 585 SRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIA 644

Query: 181 HAVGVVSKFMANPGKEH 193
           HAVGVVS+FM+ PGK+H
Sbjct: 645 HAVGVVSRFMSRPGKQH 661

[Close]
BLAST of CmaCh19G003460 vs. NCBI nr
Match: gi|147864012|emb|CAN81130.1| (hypothetical protein VITISV_003944 [Vitis vinifera])

HSP 1 Score: 247.7 bits (631), Expect = 1.7e-62
Identity = 122/198 (61.62%), Postives = 150/198 (75.76%), Query Frame = 1 

Query: 1    MDVKMAFLHGDLDEEIYMQQPEGFAAPGKEHMVCKLNKSLYGLKQAPRQWYKKFDSFMCK 60
            +DVK AFLHGDL+E++YM QPEGF   G+E++VCKL KSLYGLKQAPRQWYKKFD+FM +
Sbjct: 869  LDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHR 928

Query: 61   SGFHKSEKISVSTSRNTLILMCFYT------SKQILGMRISRDLSAGTLNLSQEQYIEKA 120
             GF + E              C++       +KQILGMRI RD + GTL LSQ +Y++K 
Sbjct: 929  IGFKRCEADHC----------CYFAMKDLGXAKQILGMRIIRDKANGTLKLSQSEYVKKV 988

Query: 121  LSKFKMNDAKPKTTPLANHIKLSKGQSPKTVEDREHMASVSYASAVGSLMYAMVCTRPDI 180
            LS+F MN+AKP +TPL +H KLSK QSPKT E+R+HM+ V YASA+GSLMY MVCTRPDI
Sbjct: 989  LSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYTMVCTRPDI 1048

Query: 181  THAVGVVSKFMANPGKEH 193
             HAVGVVS+FM+ PGK+H
Sbjct: 1049 AHAVGVVSRFMSRPGKQH 1056

[Close]
BLAST of CmaCh19G003460 vs. NCBI nr
Match: gi|147843673|emb|CAN81994.1| (hypothetical protein VITISV_043102 [Vitis vinifera])

HSP 1 Score: 246.9 bits (629), Expect = 2.9e-62
Identity = 124/202 (61.39%), Postives = 154/202 (76.24%), Query Frame = 1 

Query: 1   MDVKMAFLHGDLDEEIYMQQPEGFAAPGKEHMVCKLNKSLYGLKQAPRQWYKKFDSFMCK 60
           +DVK AFLHGDL+E++YM QPEGF   G+E++VCKL KSLYGLKQAPRQWYKKFD+FM +
Sbjct: 194 LDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHR 253

Query: 61  SGFHKSEKISV----STSRNTLILMCFY------TSKQILGMRISRDLSAGTLNLSQEQY 120
            GF + E        S   + +IL+ ++       +KQILGMRI RD + GTL LSQ +Y
Sbjct: 254 IGFKRCEADHCCYFKSFDNSYIILLLYFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEY 313

Query: 121 IEKALSKFKMNDAKPKTTPLANHIKLSKGQSPKTVEDREHMASVSYASAVGSLMYAMVCT 180
            +K L++F MN+AKP +TPL +H KLSK QSPKT E+R+HM+ V YASA+GSLMYAMVCT
Sbjct: 314 AKKVLNRFNMNEAKPISTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCT 373

Query: 181 RPDITHAVGVVSKFMANPGKEH 193
           RPDI HAVGVVSKFM+ P K+H
Sbjct: 374 RPDIAHAVGVVSKFMSRPVKQH 395

The following BLAST results are available for this feature:
BLAST of CmaCh19G003460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC2.3e-5954.19Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME1.7e-1428.57Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
YD11B_YEAST4.5e-0727.97Transposon Ty1-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ... [more]
YM12B_YEAST1.0e-0626.90Transposon Ty1-ML2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ... [more]
YM11B_YEAST1.0e-0626.90Transposon Ty1-ML1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ... [more]
BLAST of CmaCh19G003460 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BPB3_VITVI4.0e-6362.44Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034935 PE=4 SV=1[more]
A5B0V5_VITVI4.0e-6361.93Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008497 PE=4 SV=1[more]
A5B541_VITVI5.3e-6362.44Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040876 PE=3 SV=1[more]
A5BGX3_VITVI1.2e-6261.62Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003944 PE=4 SV=1[more]
A5CAL2_VITVI2.0e-6261.39Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043102 PE=4 SV=1[more]
BLAST of CmaCh19G003460 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.19.9e-1351.43 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
BLAST of CmaCh19G003460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147798867|emb|CAN65867.1|5.8e-6362.44hypothetical protein VITISV_034935 [Vitis vinifera][more]
gi|147778396|emb|CAN76274.1|5.8e-6361.93hypothetical protein VITISV_008497 [Vitis vinifera][more]
gi|147770293|emb|CAN65235.1|7.5e-6362.44hypothetical protein VITISV_040876 [Vitis vinifera][more]
gi|147864012|emb|CAN81130.1|1.7e-6261.62hypothetical protein VITISV_003944 [Vitis vinifera][more]
gi|147843673|emb|CAN81994.1|2.9e-6261.39hypothetical protein VITISV_043102 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
biological_process GO:0008152 metabolic process
biological_process GO:0044699 single-organism process
biological_process GO:0006810 transport
cellular_component GO:0016020 membrane
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G003460.1CmaCh19G003460.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..69
score: 1.1E-29coord: 85..131
score: 4.
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..192
score: 8.8
NoneNo IPR availablePANTHERPTHR11439:SF192SUBFAMILY NOT NAMEDcoord: 1..192
score: 8.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G003460Silver-seed gourdcarcmaB0459
CmaCh19G003460Watermelon (97103) v2cmawmbB551
CmaCh19G003460Watermelon (97103) v2cmawmbB560
CmaCh19G003460Cucurbita maxima (Rimu)cmacmaB017
CmaCh19G003460Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G003460Cucurbita moschata (Rifu)cmacmoB510
CmaCh19G003460Cucurbita moschata (Rifu)cmacmoB511
CmaCh19G003460Cucurbita pepo (Zucchini)cmacpeB522