CmaCh19G003440 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G003440
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPlant protein of unknown function (DUF247)
LocationCma_Chr19 : 3620211 .. 3620787 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGGTTGTCCTTATGTTGACTATGTTGCCTCTCCGACGTGATACGCACAACAGTGTCTCACTGTCCTTTTGACTTTTCTTTGGTTCAATATGTTTAGCTTCCCACGTGAAATAATTTTGCCTATTTCTTTCTTCCACATCCATTGCCCTCTCTTACTCCATCTTCTTCTTGCATCTTTCTCCATCAATTTTCCAAACAAGGTACTTCCTTATTTCTCTCCTTTTTTCTTACCTTAAAATTCATGTTGGATAAGTTCCGTTTCAAAGCTCGACATTCCTATTAGAGAAGATTTGAAAATGTAGGTGTTTTAGTTCAAGTGAAGAAGAGTTAGATTGGAGTGTATCAAGAACACAACATAGCTTGGCAGAAGGTAATATGAATGAACAATTTGGTGGTAACGTGTCATCGATCAAAACAATGCTAGAGCAACTCCCTGTTGTTAATGTAGGATGTAGCATCTATGGAGTTCCCAAACTGTTACGTCAGATGAATAATACAGCCTTTACCCTCCAAATCATTTCCATTGGCCCATTTCATCATCGTAGTCGAGAAGATTTGATATCCACAGAATAA

mRNA sequence

ATGTCTGGTTGTCCTTATGTTGACTATGTTGCCTCTCCGACGTGTTTTAGTTCAAGTGAAGAAGAGTTAGATTGGAGTGTATCAAGAACACAACATAGCTTGGCAGAAGGTAATATGAATGAACAATTTGGTGGTAACGTGTCATCGATCAAAACAATGCTAGAGCAACTCCCTGTTGTTAATGTAGGATGTAGCATCTATGGAGTTCCCAAACTGTTACGTCAGATGAATAATACAGCCTTTACCCTCCAAATCATTTCCATTGGCCCATTTCATCATCGTAGTCGAGAAGATTTGATATCCACAGAATAA

Coding sequence (CDS)

ATGTCTGGTTGTCCTTATGTTGACTATGTTGCCTCTCCGACGTGTTTTAGTTCAAGTGAAGAAGAGTTAGATTGGAGTGTATCAAGAACACAACATAGCTTGGCAGAAGGTAATATGAATGAACAATTTGGTGGTAACGTGTCATCGATCAAAACAATGCTAGAGCAACTCCCTGTTGTTAATGTAGGATGTAGCATCTATGGAGTTCCCAAACTGTTACGTCAGATGAATAATACAGCCTTTACCCTCCAAATCATTTCCATTGGCCCATTTCATCATCGTAGTCGAGAAGATTTGATATCCACAGAATAA

Protein sequence

MSGCPYVDYVASPTCFSSSEEELDWSVSRTQHSLAEGNMNEQFGGNVSSIKTMLEQLPVVNVGCSIYGVPKLLRQMNNTAFTLQIISIGPFHHRSREDLISTE
Homology
[Close]
BLAST of CmaCh19G003440 vs. TrEMBL
Match: A0A0A0K4A0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G068570 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-10
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 1 

Query: 43  FGGNVSSIKTMLEQLPVVNVGCSIYGVPKLLRQMNNTAFTLQIISIGPFHHRSREDLIST 102
           +G  V SIK+ LEQLPVVN  C IY VPKLL QM  T +  Q+ISIGPFHH S+ DL +T
Sbjct: 24  WGDTVISIKSKLEQLPVVNKECKIYRVPKLLCQMKKTTYVPQVISIGPFHHGSK-DLNAT 83

Query: 103 E 104
           E
Sbjct: 84  E 83

[Close]
BLAST of CmaCh19G003440 vs. TrEMBL
Match: A0A0A0LQ64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381630 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 1 

Query: 47  VSSIKTMLEQLPVVNVGCSIYGVPKLLRQMNNTAFTLQIISIGPFHHRSREDLISTE 104
           V SIK+ L+QL VVN  C+IY VPKLL QMN TA+  Q+ISIGP HH S+ DL +TE
Sbjct: 13  VISIKSKLKQLHVVNTECNIYRVPKLLCQMNMTAYVPQVISIGPLHHGSK-DLNATE 68

[Close]
BLAST of CmaCh19G003440 vs. TrEMBL
Match: A0A0A0LQ57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380610 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.5e-08
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 47  VSSIKTMLEQLPVVNVGCS-IYGVPKLLRQMNNTAFTLQIISIGPFHHRSREDLISTE 104
           V SI  MLE LP VN  C+ IY VPK LR++N+ A+  Q ISIGPFH+R+R+DLI+ E
Sbjct: 22  VISIDKMLEGLPRVNPKCNTIYQVPKELREINDKAYVPQFISIGPFHYRTRKDLIANE 79

[Close]
BLAST of CmaCh19G003440 vs. NCBI nr
Match: gi|659088834|ref|XP_008445186.1| (PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 3.0e-10
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 44  GGNVSSIKTMLEQLPVVNVGCSIYGVPKLLRQMNNTAFTLQIISIGPFHHRSREDLISTE 103
           G  V SIK+ LEQLP VN  CSIY VPKLL QMN  A+  Q+ISIGPFHH S+ DL +TE
Sbjct: 26  GDIVISIKSKLEQLPAVNTECSIYRVPKLLCQMNRIAYVPQVISIGPFHHGSK-DLNATE 84

[Close]
BLAST of CmaCh19G003440 vs. NCBI nr
Match: gi|700188571|gb|KGN43804.1| (hypothetical protein Csa_7G068570 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 4.0e-10
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 1 

Query: 43  FGGNVSSIKTMLEQLPVVNVGCSIYGVPKLLRQMNNTAFTLQIISIGPFHHRSREDLIST 102
           +G  V SIK+ LEQLPVVN  C IY VPKLL QM  T +  Q+ISIGPFHH S+ DL +T
Sbjct: 24  WGDTVISIKSKLEQLPVVNKECKIYRVPKLLCQMKKTTYVPQVISIGPFHHGSK-DLNAT 83

Query: 103 E 104
           E
Sbjct: 84  E 83

[Close]
BLAST of CmaCh19G003440 vs. NCBI nr
Match: gi|778672484|ref|XP_011649818.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-08
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 1 

Query: 47  VSSIKTMLEQLPVVNVGCSIYGVPKLLRQMNNTAFTLQIISIGPFHHRSREDLISTE 104
           V SIK+ L+QL VVN  C+IY VPKLL QMN TA+  Q+ISIGP HH S+ DL +TE
Sbjct: 13  VISIKSKLKQLHVVNTECNIYRVPKLLCQMNMTAYVPQVISIGPLHHGSK-DLNATE 68

[Close]
BLAST of CmaCh19G003440 vs. NCBI nr
Match: gi|700207813|gb|KGN62932.1| (hypothetical protein Csa_2G380610 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-07
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 47  VSSIKTMLEQLPVVNVGCS-IYGVPKLLRQMNNTAFTLQIISIGPFHHRSREDLISTE 104
           V SI  MLE LP VN  C+ IY VPK LR++N+ A+  Q ISIGPFH+R+R+DLI+ E
Sbjct: 22  VISIDKMLEGLPRVNPKCNTIYQVPKELREINDKAYVPQFISIGPFHYRTRKDLIANE 79

[Close]
BLAST of CmaCh19G003440 vs. NCBI nr
Match: gi|659089573|ref|XP_008445583.1| (PREDICTED: LOW QUALITY PROTEIN: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 2.4e-07
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1 

Query: 47  VSSIKTMLEQLPVVNVGCSIYGVPKLLRQMNNTAFTLQIISIGPFHH-RSREDLISTE 104
           V SI+ ML Q+  +N  CSIY +PK LR+MN  A+T Q+ISIGPFHH R + D  +TE
Sbjct: 83  VISIQKMLNQMHSINGDCSIYRIPKQLREMNPKAYTPQLISIGPFHHYRRQNDFKATE 140

The following BLAST results are available for this feature:
BLAST of CmaCh19G003440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh19G003440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4A0_CUCSA2.8e-1062.30Uncharacterized protein OS=Cucumis sativus GN=Csa_7G068570 PE=4 SV=1[more]
A0A0A0LQ64_CUCSA1.2e-0863.16Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381630 PE=4 SV=1[more]
A0A0A0LQ57_CUCSA7.5e-0858.62Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380610 PE=4 SV=1[more]
BLAST of CmaCh19G003440 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh19G003440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659088834|ref|XP_008445186.1|3.0e-1065.00PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo][more]
gi|700188571|gb|KGN43804.1|4.0e-1062.30hypothetical protein Csa_7G068570 [Cucumis sativus][more]
gi|778672484|ref|XP_011649818.1|1.7e-0863.16PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus][more]
gi|700207813|gb|KGN62932.1|1.1e-0758.62hypothetical protein Csa_2G380610 [Cucumis sativus][more]
gi|659089573|ref|XP_008445583.1|2.4e-0755.17PREDICTED: LOW QUALITY PROTEIN: UPF0481 protein At3g47200-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G003440.1CmaCh19G003440.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G003440Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G003440Cucurbita moschata (Rifu)cmacmoB510
CmaCh19G003440Cucurbita moschata (Rifu)cmacmoB511
CmaCh19G003440Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G003440Silver-seed gourdcarcmaB0459
CmaCh19G003440Watermelon (97103) v2cmawmbB551
CmaCh19G003440Watermelon (97103) v2cmawmbB560
CmaCh19G003440Cucurbita maxima (Rimu)cmacmaB017