CmaCh19G003420 (gene) Cucurbita maxima (Rimu)

NameCmaCh19G003420
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDUF247 domain protein
LocationCma_Chr19 : 3619142 .. 3619424 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCGAAACCTGATAGCGTTTAAGTATTTTTACGTTGGAAATGACAACAAATGTATCCAATATGTGTCGTTACTAGAACATTTGATATGTACAAAGAAAGATATGAGTTTACTCATGGAAGCCAAAATCATAGTCAACGAAATTGGAGGTAGTAATATAGAAGTTTCAGAACTATTTAACAATCTCTGTAAATTTGTTACCGTCCCAAATTGTTGCCACTTCAACTATATCAACAAACCTTTATGAGAACAGTGCAATAAACGATGGAACATGGCGATAG

mRNA sequence

ATGATGCGAAACCTGATAGCGTTTAAGTATTTTTACGTTGGAAATGACAACAAATGTATCCAATATGTGTCGTTACTAGAACATTTGATATGTACAAAGAAAGATATGAGTTTACTCATGGAAGCCAAAATCATAGTCAACGAAATTGGAGGTAGTAATATAGAAAACTATTTAACAATCTCTGTAAATTTGTTACCGTCCCAAATTGTTGCCACTTCAACTATATCAACAAACCTTTATGAGAACAGTGCAATAAACGATGGAACATGGCGATAG

Coding sequence (CDS)

ATGATGCGAAACCTGATAGCGTTTAAGTATTTTTACGTTGGAAATGACAACAAATGTATCCAATATGTGTCGTTACTAGAACATTTGATATGTACAAAGAAAGATATGAGTTTACTCATGGAAGCCAAAATCATAGTCAACGAAATTGGAGGTAGTAATATAGAAAACTATTTAACAATCTCTGTAAATTTGTTACCGTCCCAAATTGTTGCCACTTCAACTATATCAACAAACCTTTATGAGAACAGTGCAATAAACGATGGAACATGGCGATAG

Protein sequence

MMRNLIAFKYFYVGNDNKCIQYVSLLEHLICTKKDMSLLMEAKIIVNEIGGSNIENYLTISVNLLPSQIVATSTISTNLYENSAINDGTWR
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004158DUF247_pln
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G003420.1CmaCh19G003420.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004158Protein of unknown function DUF247, plantPFAMPF03140DUF247coord: 1..53
score: 2.

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G003420Silver-seed gourdcarcmaB0459
CmaCh19G003420Watermelon (97103) v2cmawmbB551
CmaCh19G003420Watermelon (97103) v2cmawmbB560
CmaCh19G003420Cucurbita maxima (Rimu)cmacmaB017
CmaCh19G003420Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G003420Cucurbita moschata (Rifu)cmacmoB510
CmaCh19G003420Cucurbita moschata (Rifu)cmacmoB511
CmaCh19G003420Cucurbita pepo (Zucchini)cmacpeB522