CmaCh19G003170 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTCTCTATGGAACCTTAATGCTTCTTCTTTCCTTTCTGTTACTTTTGCTTTTGAACCATGCCTTGGCTGATGGATTAACCTTAGATATCGTTAGTCTTGGAGCCAAGCCCGATGGAAAAATCGATGCCTCGCTTGTACTTCAAATTTGTCTTTGGGGGAAAGTTGAAAGAAAATGCATGGTACTCATTCTTACTCTTGGATTGTTTTGAATTTGTAGAATCTGGAAATCACAAATGCACAAAATGTTATCATCAATGGATTAGCTTCAATTAATAGCCAAATATTTAACATTATGGTGCACGGTTGCCAAAATGTGAAAATTCAAGGAGTGAAGGTCTCGGATCCTGACGATAGTTCGAACACTGATGGCTTCCATGTGCAGGAGTCCATCAGATGTGACCATTCTCAGTTCCAACATTGGCACCGGTGA ATGGCTCTCTATGGAACCTTAATGCTTCTTCTTTCCTTTCTGTTACTTTTGCTTTTGAACCATGCCTTGGCTGATGGATTAACCTTAGATATCGTTAGTCTTGGAGCCAAGCCCGATGGAAAAATCGATGCCTCGCTTAATCTGGAAATCACAAATGCACAAAATGTTATCATCAATGGATTAGCTTCAATTAATAGCCAAATATTTAACATTATGGTGCACGGTTGCCAAAATGTGAAAATTCAAGGAGTGAAGGTCTCGGATCCTGACGATAGTTCGAACACTGATGGCTTCCATGTGCAGGAGTCCATCAGATGTGACCATTCTCAGTTCCAACATTGGCACCGGTGA ATGGCTCTCTATGGAACCTTAATGCTTCTTCTTTCCTTTCTGTTACTTTTGCTTTTGAACCATGCCTTGGCTGATGGATTAACCTTAGATATCGTTAGTCTTGGAGCCAAGCCCGATGGAAAAATCGATGCCTCGCTTAATCTGGAAATCACAAATGCACAAAATGTTATCATCAATGGATTAGCTTCAATTAATAGCCAAATATTTAACATTATGGTGCACGGTTGCCAAAATGTGAAAATTCAAGGAGTGAAGGTCTCGGATCCTGACGATAGTTCGAACACTGATGGCTTCCATGTGCAGGAGTCCATCAGATGTGACCATTCTCAGTTCCAACATTGGCACCGGTGA MALYGTLMLLLSFLLLLLLNHALADGLTLDIVSLGAKPDGKIDASLNLEITNAQNVIINGLASINSQIFNIMVHGCQNVKIQGVKVSDPDDSSNTDGFHVQESIRCDHSQFQHWHR
BLAST of CmaCh19G003170 vs. Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 4.9e-09 Identity = 28/56 (50.00%), Postives = 45/56 (80.36%), Query Frame = 1
BLAST of CmaCh19G003170 vs. Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 2.1e-07 Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1
BLAST of CmaCh19G003170 vs. Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 6.7e-06 Identity = 27/73 (36.99%), Postives = 47/73 (64.38%), Query Frame = 1
BLAST of CmaCh19G003170 vs. TrEMBL
Match: A0A0A0KN91_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409610 PE=3 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14 Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 1
BLAST of CmaCh19G003170 vs. TrEMBL
Match: A0A059AVP0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00255 PE=3 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 7.4e-12 Identity = 37/79 (46.84%), Postives = 56/79 (70.89%), Query Frame = 1
BLAST of CmaCh19G003170 vs. TrEMBL
Match: A0A058ZUB7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01371 PE=3 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 9.7e-12 Identity = 42/83 (50.60%), Postives = 59/83 (71.08%), Query Frame = 1
BLAST of CmaCh19G003170 vs. TrEMBL
Match: B9N8Q6_POPTR (Polygalacturonase family protein OS=Populus trichocarpa GN=POPTR_0017s03740g PE=3 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 1.7e-11 Identity = 46/97 (47.42%), Postives = 62/97 (63.92%), Query Frame = 1
BLAST of CmaCh19G003170 vs. TrEMBL
Match: U5FH48_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03770g PE=3 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 1.7e-11 Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = 1
BLAST of CmaCh19G003170 vs. TAIR10
Match: AT3G59850.1 (AT3G59850.1 Pectin lyase-like superfamily protein) HSP 1 Score: 66.2 bits (160), Expect = 1.5e-11 Identity = 29/52 (55.77%), Postives = 42/52 (80.77%), Query Frame = 1
BLAST of CmaCh19G003170 vs. TAIR10
Match: AT2G43870.1 (AT2G43870.1 Pectin lyase-like superfamily protein) HSP 1 Score: 65.9 bits (159), Expect = 1.9e-11 Identity = 28/52 (53.85%), Postives = 42/52 (80.77%), Query Frame = 1
BLAST of CmaCh19G003170 vs. TAIR10
Match: AT1G65570.1 (AT1G65570.1 Pectin lyase-like superfamily protein) HSP 1 Score: 60.8 bits (146), Expect = 6.2e-10 Identity = 26/61 (42.62%), Postives = 43/61 (70.49%), Query Frame = 1
BLAST of CmaCh19G003170 vs. TAIR10
Match: AT1G05660.1 (AT1G05660.1 Pectin lyase-like superfamily protein) HSP 1 Score: 58.5 bits (140), Expect = 3.1e-09 Identity = 26/57 (45.61%), Postives = 43/57 (75.44%), Query Frame = 1
BLAST of CmaCh19G003170 vs. TAIR10
Match: AT2G43860.1 (AT2G43860.1 Pectin lyase-like superfamily protein) HSP 1 Score: 56.6 bits (135), Expect = 1.2e-08 Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1
BLAST of CmaCh19G003170 vs. NCBI nr
Match: gi|449445220|ref|XP_004140371.1| (PREDICTED: polygalacturonase [Cucumis sativus]) HSP 1 Score: 87.4 bits (215), Expect = 1.8e-14 Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 1
BLAST of CmaCh19G003170 vs. NCBI nr
Match: gi|659121214|ref|XP_008460550.1| (PREDICTED: polygalacturonase-like [Cucumis melo]) HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13 Identity = 40/67 (59.70%), Postives = 54/67 (80.60%), Query Frame = 1
BLAST of CmaCh19G003170 vs. NCBI nr
Match: gi|629091490|gb|KCW57485.1| (hypothetical protein EUGRSUZ_H00255 [Eucalyptus grandis]) HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11 Identity = 37/79 (46.84%), Postives = 56/79 (70.89%), Query Frame = 1
BLAST of CmaCh19G003170 vs. NCBI nr
Match: gi|702432501|ref|XP_010069209.1| (PREDICTED: polygalacturonase-like [Eucalyptus grandis]) HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11 Identity = 37/79 (46.84%), Postives = 56/79 (70.89%), Query Frame = 1
BLAST of CmaCh19G003170 vs. NCBI nr
Match: gi|629077463|gb|KCW45034.1| (hypothetical protein EUGRSUZ_L01371 [Eucalyptus grandis]) HSP 1 Score: 77.8 bits (190), Expect = 1.4e-11 Identity = 42/83 (50.60%), Postives = 59/83 (71.08%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|