CmaCh19G003100 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G003100
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	DNA-directed RNA polymerase subunit beta
Location	Cma_Chr19 : 2629559 .. 2631123 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTGTGATGTAACTGAAGGCAAAGAGGGAAGATTTCGGGAAACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTATATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCCACTTTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGTTGTTCATGTACCTTTATCGTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGGCTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGGTATAATCCATGTAATCGCAAAAATAATAAAAATGAAAAAAATTTCAATAATAACTATAAATAGACGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTGATCGCCAGAAAAGAATCAATTTAGATAGTCCTTTGTGGCTCCGCTGGCGACTAGATCAACGCGTTATTGCTTCAAGAGAAGCTCCTATCGAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTACGGGTACTATCTAATAGTCAAAAGTATAAAAAAAGAAATTCTTTGTATATACATTCGAACCACTGTTGGTCATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTGCTCATATGGTACGTATTCCTCTAGTATCTCACTCAGCTAAGTAATTATATGACACCGATATGAATTTAGTTCTCTCCGGTTCAACTAGGACCATAGGTCCTGAATTTCTACGCGAATCAAGATCGAGAAAAGGAAGTTTTCCAATCATTGACTCAAACCTCAAACCTATTGTCGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGAACGGGCTGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAAATAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCTAG

mRNA sequence

ATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTGTGATGTAACTGAAGGCAAAGAGGGAAGATTTCGGGAAACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTATATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCCACTTTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGTTGTTCATGTACCTTTATCGTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGGCTCTATGTATTAACGAGCGGGAATCGCCGAGATCGAGAAAAGGAAGTTTTCCAATCATTGACTCAAACCTCAAACCTATTGTCGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGAACGGGCTGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAAATAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCTAG

Coding sequence (CDS)

ATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTGTGATGTAACTGAAGGCAAAGAGGGAAGATTTCGGGAAACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTATATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCCACTTTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGTTGTTCATGTACCTTTATCGTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGGCTCTATGTATTAACGAGCGGGAATCGCCGAGATCGAGAAAAGGAAGTTTTCCAATCATTGACTCAAACCTCAAACCTATTGTCGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGAACGGGCTGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAAATAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCTAG

Protein sequence

MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFCDVTEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIIWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMVVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRDREKEVFQSLTQTSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLR

Homology

[Close]

BLAST of CmaCh19G003100 vs. Swiss-Prot
Match: RPOC1_CUCSA (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 453.4 bits (1165), Expect = 2.3e-126
Identity = 223/227 (98.24%), Postives = 224/227 (98.68%), Query Frame = 1


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFCDVTEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF DV EGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIIWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPI+WEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMVVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQM VHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 228
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 548

[Close]

BLAST of CmaCh19G003100 vs. Swiss-Prot
Match: RPOC1_BUXMI (DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 1.3e-124
Identity = 220/227 (96.92%), Postives = 222/227 (97.80%), Query Frame = 1


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFCDVTEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF DV EGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIIWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPI+WEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMVVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQM VHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 228
           SLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSGNRR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRR 548

[Close]

BLAST of CmaCh19G003100 vs. Swiss-Prot
Match: RPOC1_SOYBN (DNA-directed RNA polymerase subunit beta' OS=Glycine max GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 446.4 bits (1147), Expect = 2.8e-124
Identity = 217/227 (95.59%), Postives = 222/227 (97.80%), Query Frame = 1


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFCDVTEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF D+ EGKEGRFRETLLGKRVDYSGR
Sbjct: 324 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDIIEGKEGRFRETLLGKRVDYSGR 383

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIIWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR+HFASNIG+AKSKIREKEPI+WEIL
Sbjct: 384 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHFASNIGIAKSKIREKEPIVWEIL 443

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMVVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQM VHVPL
Sbjct: 444 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 503

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 228
           SLEAQAEARLLMFSH NLLS AIGDPISVPTQDMLIGLY+LTSGNRR
Sbjct: 504 SLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDMLIGLYILTSGNRR 550

[Close]

BLAST of CmaCh19G003100 vs. Swiss-Prot
Match: RPOC1_ATRBE (DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 446.0 bits (1146), Expect = 3.7e-124
Identity = 218/227 (96.04%), Postives = 221/227 (97.36%), Query Frame = 1


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFCDVTEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF DV EGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIIWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPI+WEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMVVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQM VHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 228
           SLEAQ EARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSGNRR
Sbjct: 502 SLEAQVEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRR 548

[Close]

BLAST of CmaCh19G003100 vs. Swiss-Prot
Match: RPOC1_ACOAM (DNA-directed RNA polymerase subunit beta' OS=Acorus americanus GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 6.3e-124
Identity = 217/227 (95.59%), Postives = 221/227 (97.36%), Query Frame = 1


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFCDVTEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF DV EGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIIWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIG+AKSKIREKEPI+WEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGIAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMVVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQM VHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 228
           SLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLT GNRR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTMGNRR 548

[Close]

BLAST of CmaCh19G003100 vs. TrEMBL
Match: A0A072TLG9_MEDTR (DNA-directed RNA polymerase subunit OS=Medicago truncatula GN=MTR_0002s0510 PE=3 SV=1)

HSP 1 Score: 570.9 bits (1470), Expect = 1.1e-159
Identity = 292/354 (82.49%), Postives = 309/354 (87.29%), Query Frame = 1


Query: 1    MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFCDVTEGKEGRFRETLLGKRVDYSGR 60
            MCQEKLVQEAVDTLLD+G RGQP RDGHNKVYKS  DV EGKEGRFRETLLGKRVDYSGR
Sbjct: 1423 MCQEKLVQEAVDTLLDSGSRGQPTRDGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGR 1482

Query: 61   SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIIWEIL 120
            SVIVVGPSLSLH+CGLP EIAI+LFQ F+IR LI +   SN+ +AK KI EKEPI+WEIL
Sbjct: 1483 SVIVVGPSLSLHQCGLPLEIAIKLFQLFVIRDLITKRATSNVRIAKRKIWEKEPIVWEIL 1542

Query: 121  QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMVVHVPL 180
            QEVM+GHPVLLNRAPTLHRLGIQAFQP LVEGR I LHPLVCKGFNADFDGDQM VH+PL
Sbjct: 1543 QEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTISLHPLVCKGFNADFDGDQMAVHLPL 1602

Query: 181  SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRDREKEVFQSLTQT 240
            SLEAQAEARLLMFSHMNLLS AIGDPI VPTQDMLIGLYVLT G RR         L+  
Sbjct: 1603 SLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGKRRG-------PLSNP 1662

Query: 241  SNLLSNPTQRNMEVL-MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKT 300
            +  LSNPTQ     L MAERA+LVFHNK IDGT +KRLISRLIDHFGMAYTSHILDQ+KT
Sbjct: 1663 TQQLSNPTQPKRGYLCMAERANLVFHNKEIDGTGMKRLISRLIDHFGMAYTSHILDQVKT 1722

Query: 301  LGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLR 354
            LGF+QATATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKH+HYGNVHAVEKLR
Sbjct: 1723 LGFRQATATSISLGIDDLLTIPSKGWLVQDAEQQSSILEKHNHYGNVHAVEKLR 1769

[Close]

BLAST of CmaCh19G003100 vs. TrEMBL
Match: W8E6U8_9ROSI (DNA-directed RNA polymerase subunit OS=Cucumis hystrix GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 2.6e-124
Identity = 223/227 (98.24%), Postives = 224/227 (98.68%), Query Frame = 1


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFCDVTEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF DV EGKEGRFRETLLGKRVDYSGR
Sbjct: 323 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 382

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIIWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPI+WEIL
Sbjct: 383 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 442

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMVVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQM VHVPL
Sbjct: 443 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 502

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 228
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR
Sbjct: 503 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 549

[Close]

BLAST of CmaCh19G003100 vs. TrEMBL
Match: X2F711_LAGSI (DNA-directed RNA polymerase subunit OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 2.6e-124
Identity = 223/227 (98.24%), Postives = 224/227 (98.68%), Query Frame = 1


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFCDVTEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF DV EGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIIWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPI+WEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMVVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQM VHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 228
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 548

[Close]

BLAST of CmaCh19G003100 vs. TrEMBL
Match: X2FAC8_LAGSI (DNA-directed RNA polymerase subunit (Fragment) OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 2.6e-124
Identity = 223/227 (98.24%), Postives = 224/227 (98.68%), Query Frame = 1


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFCDVTEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF DV EGKEGRFRETLLGKRVDYSGR
Sbjct: 320 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 379

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIIWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPI+WEIL
Sbjct: 380 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 439

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMVVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQM VHVPL
Sbjct: 440 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 499

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 228
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR
Sbjct: 500 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 546

[Close]

BLAST of CmaCh19G003100 vs. TrEMBL
Match: X2F0G9_LAGSI (DNA-directed RNA polymerase subunit OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 2.6e-124
Identity = 223/227 (98.24%), Postives = 224/227 (98.68%), Query Frame = 1


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFCDVTEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF DV EGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIIWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPI+WEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMVVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQM VHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 228
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 548

[Close]

BLAST of CmaCh19G003100 vs. TAIR10
Match: ATCG00180.1 (ATCG00180.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 439.9 bits (1130), Expect = 1.5e-123
Identity = 215/227 (94.71%), Postives = 220/227 (96.92%), Query Frame = 1


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFCDVTEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF DV EGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIIWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKS+IREK+PI+WEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMVVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQ+FQPILVEGR ICLHPLVCKGFNADFDGDQM VHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGRTICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 228
           SLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSG RR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRR 548

[Close]

BLAST of CmaCh19G003100 vs. TAIR10
Match: ATCG00170.1 (ATCG00170.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 192.2 bits (487), Expect = 5.4e-49
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 1


Query: 256 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 315
           MAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 1   MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60

Query: 316 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLR 354
           DLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLR
Sbjct: 61  DLLTIPSKGWLVQDAEQQSWILEKHHHYGNVHAVEKLR 98

[Close]

BLAST of CmaCh19G003100 vs. TAIR10
Match: AT4G35800.1 (AT4G35800.1 RNA polymerase II large subunit)

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-23
Identity = 79/261 (30.27%), Postives = 125/261 (47.89%), Query Frame = 1


Query: 5   KLVQEAVDTLLDNGIRGQPMRDGHN-KVYKSFCDVTEGKEGRFRETLLGKRVDYSGRSVI 64
           +L+Q  + T  DN + GQP     + +  KS C   + KEGR R  L+GKRVD+S R+VI
Sbjct: 305 QLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 364

Query: 65  VVGPSLSLHRCGLPREIAIEL--------FQTFLIRGLI--RQHFASNIGVAKSKIREKE 124
              P++++   G+P  IA+ L        +    ++ L+    H       AK  IR+  
Sbjct: 365 TPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDG 424

Query: 125 PII----------------WEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL 184
             +                +++ + +  G  VL NR P+LH++ I   +  ++      L
Sbjct: 425 QRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRL 484

Query: 185 HPLVCKGFNADFDGDQMVVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIG 237
           +  V   +NADFDGD+M +HVP S E +AE   LM     ++S     P+    QD L+G
Sbjct: 485 NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLG 544

[Close]

BLAST of CmaCh19G003100 vs. TAIR10
Match: AT5G60040.2 (AT5G60040.2 nuclear RNA polymerase C1)

HSP 1 Score: 103.6 bits (257), Expect = 2.5e-22
Identity = 66/207 (31.88%), Postives = 105/207 (50.72%), Query Frame = 1


Query: 40  EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA-------------IELFQ 99
           +GK GRFR  L GKRV+++GR+VI   P+L +   G+P  +A             IE  +
Sbjct: 357 KGKGGRFRANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLR 416

Query: 100 TFLIRGLIRQHFASNI-----------GVAKSKIREKEPIIWEILQEVMQGHPVLLNRAP 159
             +  G  +   A N+           G  + +I ++  I   + + + +G  VL NR P
Sbjct: 417 QCVRNGPNKYPGARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQP 476

Query: 160 TLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMVVHVPLSLEAQAEARLLMFSH 219
           +LHR+ I   +  ++  R +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM   
Sbjct: 477 SLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQ 536

Query: 220 MNLLSSAIGDPISVPTQDMLIGLYVLT 223
            NL +   G+ +   TQD L   +++T
Sbjct: 537 NNLCTPKNGEILVASTQDFLTSSFLIT 563

[Close]

BLAST of CmaCh19G003100 vs. TAIR10
Match: AT1G63020.1 (AT1G63020.1 nuclear RNA polymerase D1A)

HSP 1 Score: 77.4 bits (189), Expect = 2.0e-14
Identity = 52/191 (27.23%), Postives = 94/191 (49.21%), Query Frame = 1


Query: 47  RETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASN----- 106
           ++ LLGKR D++ R+V+V  PSL L+  G+P  IA  L  +  +    ++   ++     
Sbjct: 310 KDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERLVTSFVPTL 369

Query: 107 IGVAKSKIREKEPIIW----------EILQEVMQGHPVLLNRAPTLHRLGIQAFQP-ILV 166
           +   +  +R  + ++           +I + +M G  VL+NR P++H+  + A    IL 
Sbjct: 370 LDNKEMHVRRGDRLVAIQVNDLQTGDKIFRSLMDGDTVLMNRPPSIHQHSLIAMTVRILP 429

Query: 167 EGRAICLHPLVCKGFNADFDGDQMVVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVP 222
               + L+P+ C  F  DFDGD +  +VP S++A+ E   L+     L++   G  +   
Sbjct: 430 TTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVALDKQLINRQNGRNLLSL 489

[Close]

BLAST of CmaCh19G003100 vs. NCBI nr
Match: gi|922328581|ref|XP_013443683.1| (DNA-directed RNA polymerase subunit beta [Medicago truncatula])

HSP 1 Score: 570.9 bits (1470), Expect = 1.6e-159
Identity = 292/354 (82.49%), Postives = 309/354 (87.29%), Query Frame = 1


Query: 1    MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFCDVTEGKEGRFRETLLGKRVDYSGR 60
            MCQEKLVQEAVDTLLD+G RGQP RDGHNKVYKS  DV EGKEGRFRETLLGKRVDYSGR
Sbjct: 1423 MCQEKLVQEAVDTLLDSGSRGQPTRDGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGR 1482

Query: 61   SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIIWEIL 120
            SVIVVGPSLSLH+CGLP EIAI+LFQ F+IR LI +   SN+ +AK KI EKEPI+WEIL
Sbjct: 1483 SVIVVGPSLSLHQCGLPLEIAIKLFQLFVIRDLITKRATSNVRIAKRKIWEKEPIVWEIL 1542

Query: 121  QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMVVHVPL 180
            QEVM+GHPVLLNRAPTLHRLGIQAFQP LVEGR I LHPLVCKGFNADFDGDQM VH+PL
Sbjct: 1543 QEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTISLHPLVCKGFNADFDGDQMAVHLPL 1602

Query: 181  SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRDREKEVFQSLTQT 240
            SLEAQAEARLLMFSHMNLLS AIGDPI VPTQDMLIGLYVLT G RR         L+  
Sbjct: 1603 SLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGKRRG-------PLSNP 1662

Query: 241  SNLLSNPTQRNMEVL-MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKT 300
            +  LSNPTQ     L MAERA+LVFHNK IDGT +KRLISRLIDHFGMAYTSHILDQ+KT
Sbjct: 1663 TQQLSNPTQPKRGYLCMAERANLVFHNKEIDGTGMKRLISRLIDHFGMAYTSHILDQVKT 1722

Query: 301  LGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLR 354
            LGF+QATATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKH+HYGNVHAVEKLR
Sbjct: 1723 LGFRQATATSISLGIDDLLTIPSKGWLVQDAEQQSSILEKHNHYGNVHAVEKLR 1769

[Close]

BLAST of CmaCh19G003100 vs. NCBI nr
Match: gi|74027092|gb|AAZ94642.1| (RNA polymerase beta I subunit [Cucumis sativus])

HSP 1 Score: 453.4 bits (1165), Expect = 3.7e-124
Identity = 223/227 (98.24%), Postives = 224/227 (98.68%), Query Frame = 1


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFCDVTEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF DV EGKEGRFRETLLGKRVDYSGR
Sbjct: 329 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 388

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIIWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPI+WEIL
Sbjct: 389 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 448

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMVVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQM VHVPL
Sbjct: 449 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 508

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 228
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR
Sbjct: 509 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 555

[Close]

BLAST of CmaCh19G003100 vs. NCBI nr
Match: gi|590000406|ref|YP_009004035.1| (RNA polymerase beta [Cucumis hystrix])

HSP 1 Score: 453.4 bits (1165), Expect = 3.7e-124
Identity = 223/227 (98.24%), Postives = 224/227 (98.68%), Query Frame = 1


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFCDVTEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF DV EGKEGRFRETLLGKRVDYSGR
Sbjct: 323 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 382

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIIWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPI+WEIL
Sbjct: 383 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 442

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMVVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQM VHVPL
Sbjct: 443 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 502

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 228
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR
Sbjct: 503 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 549

[Close]

BLAST of CmaCh19G003100 vs. NCBI nr
Match: gi|595645277|gb|AHM88739.1| (RNA polymerase beta (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 453.4 bits (1165), Expect = 3.7e-124
Identity = 223/227 (98.24%), Postives = 224/227 (98.68%), Query Frame = 1


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFCDVTEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF DV EGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIIWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPI+WEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMVVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQM VHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 228
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 548

[Close]

BLAST of CmaCh19G003100 vs. NCBI nr
Match: gi|346578182|ref|YP_004841774.1| (RNA polymerase beta [Cucumis melo subsp. melo])

HSP 1 Score: 453.4 bits (1165), Expect = 3.7e-124
Identity = 223/227 (98.24%), Postives = 224/227 (98.68%), Query Frame = 1


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFCDVTEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF DV EGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIIWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPI+WEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMVVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQM VHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 228
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRR 548

The following BLAST results are available for this feature:

BLAST of CmaCh19G003100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPOC1_CUCSA	2.3e-126	98.24	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus GN=rpoC1 PE=3 SV=3	[more]
RPOC1_BUXMI	1.3e-124	96.92	DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla GN=rpoC1 PE=3 SV=...	[more]
RPOC1_SOYBN	2.8e-124	95.59	DNA-directed RNA polymerase subunit beta' OS=Glycine max GN=rpoC1 PE=3 SV=2	[more]
RPOC1_ATRBE	3.7e-124	96.04	DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna GN=rpoC1 PE=3 SV=...	[more]
RPOC1_ACOAM	6.3e-124	95.59	DNA-directed RNA polymerase subunit beta' OS=Acorus americanus GN=rpoC1 PE=3 SV=...	[more]

BLAST of CmaCh19G003100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A072TLG9_MEDTR	1.1e-159	82.49	DNA-directed RNA polymerase subunit OS=Medicago truncatula GN=MTR_0002s0510 PE=3...	[more]
W8E6U8_9ROSI	2.6e-124	98.24	DNA-directed RNA polymerase subunit OS=Cucumis hystrix GN=rpoC1 PE=3 SV=1	[more]
X2F711_LAGSI	2.6e-124	98.24	DNA-directed RNA polymerase subunit OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1	[more]
X2FAC8_LAGSI	2.6e-124	98.24	DNA-directed RNA polymerase subunit (Fragment) OS=Lagenaria siceraria GN=rpoC1 P...	[more]
X2F0G9_LAGSI	2.6e-124	98.24	DNA-directed RNA polymerase subunit OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1	[more]

BLAST of CmaCh19G003100 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00180.1	1.5e-123	94.71	ATCG00180.1 DNA-directed RNA polymerase family protein	[more]
ATCG00170.1	5.4e-49	96.94	ATCG00170.1 DNA-directed RNA polymerase family protein	[more]
AT4G35800.1	1.0e-23	30.27	RNA polymerase II large subunit	[more]
AT5G60040.2	2.5e-22	31.88	nuclear RNA polymerase C1	[more]
AT1G63020.1	2.0e-14	27.23	nuclear RNA polymerase D1A	[more]

BLAST of CmaCh19G003100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|922328581\|ref\|XP_013443683.1\|	1.6e-159	82.49	DNA-directed RNA polymerase subunit beta [Medicago truncatula]	[more]
gi\|74027092\|gb\|AAZ94642.1\|	3.7e-124	98.24	RNA polymerase beta I subunit [Cucumis sativus]	[more]
gi\|590000406\|ref\|YP_009004035.1\|	3.7e-124	98.24	RNA polymerase beta [Cucumis hystrix]	[more]
gi\|595645277\|gb\|AHM88739.1\|	3.7e-124	98.24	RNA polymerase beta (chloroplast) [Lagenaria siceraria]	[more]
gi\|346578182\|ref\|YP_004841774.1\|	3.7e-124	98.24	RNA polymerase beta [Cucumis melo subsp. melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000722	RNA_pol_asu
IPR006592	RNA_pol_N
IPR007066	RNA_pol_Rpb1_3
IPR007080	RNA_pol_Rpb1_1

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G003100.1	CmaCh19G003100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 107..192 score: 2.0E-26coord: 52..98 score: 1.
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 1..222 score: 4.1E
IPR007066	RNA polymerase Rpb1, domain 3	PFAM	PF04983	RNA_pol_Rpb1_3	coord: 197..246 score: 2.9E-5coord: 254..317 score: 4.
IPR007080	RNA polymerase Rpb1, domain 1	PFAM	PF04997	RNA_pol_Rpb1_1	coord: 3..50 score: 3.
None	No IPR available	GENE3D	G3DSA:2.40.40.20		coord: 125..196 score: 4.8E-38coord: 57..84 score: 4.8
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 1..353 score: 4.5E
None	No IPR available	unknown	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 3..351 score: 2.98E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G003100	Cucumber (Chinese Long) v3	cmacucB0634
CmaCh19G003100	Watermelon (97103) v2	cmawmbB551
CmaCh19G003100	Watermelon (97103) v2	cmawmbB557
CmaCh19G003100	Wax gourd	cmawgoB0655
CmaCh19G003100	Cucurbita maxima (Rimu)	cmacmaB153
CmaCh19G003100	Cucumber (Gy14) v1	cgycmaB0526
CmaCh19G003100	Cucurbita moschata (Rifu)	cmacmoB493
CmaCh19G003100	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G003100	Wild cucumber (PI 183967)	cmacpiB529
CmaCh19G003100	Cucumber (Chinese Long) v2	cmacuB523
CmaCh19G003100	Melon (DHL92) v3.5.1	cmameB479
CmaCh19G003100	Watermelon (Charleston Gray)	cmawcgB448
CmaCh19G003100	Cucurbita pepo (Zucchini)	cmacpeB522
CmaCh19G003100	Cucurbita pepo (Zucchini)	cmacpeB538
CmaCh19G003100	Bottle gourd (USVL1VR-Ls)	cmalsiB482
CmaCh19G003100	Cucumber (Gy14) v2	cgybcmaB785
CmaCh19G003100	Melon (DHL92) v3.6.1	cmamedB554
CmaCh19G003100	Silver-seed gourd	carcmaB1029