CmaCh19G002660 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G002660
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	Cma_Chr19 : 1903036 .. 1904382 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGATCACGGGGCTCGCCAACAGCATCACCACTCTCGGTGGCAGCATCAGCGAGACAGAAATCGTGAAGAAGATGCTGCAGGTCGTCCCCGATCACCTCGAGCAAGTTGCGATTTCGATCGAGACATTGCTTGACGTGAACGACCTAACGGTGGAAGAGGTGATCGGAAGACTGCGTAACATCGAGCAGCGGAAGAAAAATATCGTTTCAGCTGTCGACCAGGAGGGTCGTCTACTCCTCACTGAAGAGGAATGGCTTGCATGCCTAAAGCTCTGTGACGACACCGGCGAGAGCAATGGGCCTTCCAGCCGCAAAGGCGGTAAGAAGCCATGGAAATCTCGCCGGCACATGCGCGGGAAAGAGGAGGATCAAAAGAAGGAGGAGCCGACTGATGACGAGCCAATCCAGTGCTCGTATTGTGGGAAGAGAGATCACCTGAGCAAGAATTGCTGGAGCAAGCTCAGGAACAAGGAGACGCTCGAGAAGGCCCATGTGGCTCAATCCGAGGAGGACGAGCCGACCCTTTTCATGGTGACTGCATCAGTCCTACCTGATGTCCCTAATTCCGATTCCAAATCCATAGAGGTAATCGACGACGACATAATTGCTCCGGTGAGCGTCAAACCCGAGGAAGAGCTCCCCAAATCCACAGAGGTAATCGACGACGGCATAACTACTCCGGTGAGCGTCGAACCCGAGGAAGAGCTCCAATTGTGCATAACAAAGGCACCGGCTGGGGAGCCAATTCAACTGAAGGAGGAGCGAGTGTTCGCTCAAATCGGTGAAAGAGGCGAGCAGCAAGAGCACCGGCGATGGGTCCTCGACACGGGGGCAACAAACCATATGACCAGGGCCAAGTTTGAGTTCTCCGAGCTTGACTCGGGGATTCGCGGGACGGTGAAATTCGGTGACGGCTCCGTCGTCGAGATCGAAGGGCACGACACCATCCTGTTCGTCGGCAAGGGAGGCAAACATCACAAGCTGACCGACGTCTACTTCATCTCGAGGCTCAAGGCTAATATTGTGAGCTTGGGTCAACTCAATAAGGCCGGCTGCCACATTTCCATCAAGCGCGGGCTACTTAGGATCCGCGATGATCGACGACGGTTGCTCACGCAAGTTCGGTGCACGGCAAACTGCCTTTACATCCTAGAGTTGGAGATAGAGCAACCAGTCAACCTCTCGGCCAGGTACCGGAGGATGGAAGACCTATTAGGAAGAGGTGAACCACCTGGACTGGCGGCGCGCCAACTCGAAGAAGAGGTGGCCGAACATGATGGTCTGGAGGACATGCCGCCAGGGACACCGAGCCATAGGGCTCAAATCGGAGTACAAACAAAATAA

mRNA sequence

ATGCGGATCACGGGGCTCGCCAACAGCATCACCACTCTCGGTGGCAGCATCAGCGAGACAGAAATCGTGAAGAAGATGCTGCAGGTCGTCCCCGATCACCTCGAGCAAGTTGCGATTTCGATCGAGACATTGCTTGACGTGAACGACCTAACGGTGGAAGAGGTGATCGGAAGACTGCGTAACATCGAGCAGCGGAAGAAAAATATCGTTTCAGCTGTCGACCAGGAGGGTCGTCTACTCCTCACTGAAGAGGAATGGCTTGCATGCCTAAAGCTCTGTGACGACACCGGCGAGAGCAATGGGCCTTCCAGCCGCAAAGGCGGTAAGAAGCCATGGAAATCTCGCCGGCACATGCGCGGGAAAGAGGAGGATCAAAAGAAGGAGGAGCCGACTGATGACGAGCCAATCCAGTGCTCGTATTGTGGGAAGAGAGATCACCTGAGCAAGAATTGCTGGAGCAAGCTCAGGAACAAGGAGACGCTCGAGAAGGCCCATGTGGCTCAATCCGAGGAGGACGAGCCGACCCTTTTCATGGTGACTGCATCAGTCCTACCTGATGTCCCTAATTCCGATTCCAAATCCATAGAGGTAATCGACGACGACATAATTGCTCCGGTGAGCGTCAAACCCGAGGAAGAGCTCCCCAAATCCACAGAGGTAATCGACGACGGCATAACTACTCCGGTGAGCGTCGAACCCGAGGAAGAGCTCCAATTGTGCATAACAAAGGCACCGGCTGGGGAGCCAATTCAACTGAAGGAGGAGCGAGTGTTCGCTCAAATCGGTGAAAGAGGCGAGCAGCAAGAGCACCGGCGATGGGTCCTCGACACGGGGGCAACAAACCATATGACCAGGGCCAAGTTTGAGTTCTCCGAGCTTGACTCGGGGATTCGCGGGACGGTGAAATTCGGTGACGGCTCCGTCGTCGAGATCGAAGGGCACGACACCATCCTGTTCGTCGGCAAGGGAGGCAAACATCACAAGCTGACCGACGTCTACTTCATCTCGAGGCTCAAGGCTAATATTGTGAGCTTGGGTCAACTCAATAAGGCCGGCTGCCACATTTCCATCAAGCGCGGGCTACTTAGGATCCGCGATGATCGACGACGGTTGCTCACGCAAGTTCGGTGCACGGCAAACTGCCTTTACATCCTAGAGTTGGAGATAGAGCAACCAGTCAACCTCTCGGCCAGGTACCGGAGGATGGAAGACCTATTAGGAAGAGGTGAACCACCTGGACTGGCGGCGCGCCAACTCGAAGAAGAGGTGGCCGAACATGATGGTCTGGAGGACATGCCGCCAGGGACACCGAGCCATAGGGCTCAAATCGGAGTACAAACAAAATAA

Coding sequence (CDS)

ATGCGGATCACGGGGCTCGCCAACAGCATCACCACTCTCGGTGGCAGCATCAGCGAGACAGAAATCGTGAAGAAGATGCTGCAGGTCGTCCCCGATCACCTCGAGCAAGTTGCGATTTCGATCGAGACATTGCTTGACGTGAACGACCTAACGGTGGAAGAGGTGATCGGAAGACTGCGTAACATCGAGCAGCGGAAGAAAAATATCGTTTCAGCTGTCGACCAGGAGGGTCGTCTACTCCTCACTGAAGAGGAATGGCTTGCATGCCTAAAGCTCTGTGACGACACCGGCGAGAGCAATGGGCCTTCCAGCCGCAAAGGCGGTAAGAAGCCATGGAAATCTCGCCGGCACATGCGCGGGAAAGAGGAGGATCAAAAGAAGGAGGAGCCGACTGATGACGAGCCAATCCAGTGCTCGTATTGTGGGAAGAGAGATCACCTGAGCAAGAATTGCTGGAGCAAGCTCAGGAACAAGGAGACGCTCGAGAAGGCCCATGTGGCTCAATCCGAGGAGGACGAGCCGACCCTTTTCATGGTGACTGCATCAGTCCTACCTGATGTCCCTAATTCCGATTCCAAATCCATAGAGGTAATCGACGACGACATAATTGCTCCGGTGAGCGTCAAACCCGAGGAAGAGCTCCCCAAATCCACAGAGGTAATCGACGACGGCATAACTACTCCGGTGAGCGTCGAACCCGAGGAAGAGCTCCAATTGTGCATAACAAAGGCACCGGCTGGGGAGCCAATTCAACTGAAGGAGGAGCGAGTGTTCGCTCAAATCGGTGAAAGAGGCGAGCAGCAAGAGCACCGGCGATGGGTCCTCGACACGGGGGCAACAAACCATATGACCAGGGCCAAGTTTGAGTTCTCCGAGCTTGACTCGGGGATTCGCGGGACGGTGAAATTCGGTGACGGCTCCGTCGTCGAGATCGAAGGGCACGACACCATCCTGTTCGTCGGCAAGGGAGGCAAACATCACAAGCTGACCGACGTCTACTTCATCTCGAGGCTCAAGGCTAATATTGTGAGCTTGGGTCAACTCAATAAGGCCGGCTGCCACATTTCCATCAAGCGCGGGCTACTTAGGATCCGCGATGATCGACGACGGTTGCTCACGCAAGTTCGGTGCACGGCAAACTGCCTTTACATCCTAGAGTTGGAGATAGAGCAACCAGTCAACCTCTCGGCCAGGTACCGGAGGATGGAAGACCTATTAGGAAGAGGTGAACCACCTGGACTGGCGGCGCGCCAACTCGAAGAAGAGGTGGCCGAACATGATGGTCTGGAGGACATGCCGCCAGGGACACCGAGCCATAGGGCTCAAATCGGAGTACAAACAAAATAA

Protein sequence

MRITGLANSITTLGGSISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLRNIEQRKKNIVSAVDQEGRLLLTEEEWLACLKLCDDTGESNGPSSRKGGKKPWKSRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRDHLSKNCWSKLRNKETLEKAHVAQSEEDEPTLFMVTASVLPDVPNSDSKSIEVIDDDIIAPVSVKPEEELPKSTEVIDDGITTPVSVEPEEELQLCITKAPAGEPIQLKEERVFAQIGERGEQQEHRRWVLDTGATNHMTRAKFEFSELDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDVYFISRLKANIVSLGQLNKAGCHISIKRGLLRIRDDRRRLLTQVRCTANCLYILELEIEQPVNLSARYRRMEDLLGRGEPPGLAARQLEEEVAEHDGLEDMPPGTPSHRAQIGVQTK

Homology

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BLAST of CmaCh19G002660 vs. TrEMBL
Match: Q7XPB1_ORYSJ (OSJNBb0026E15.10 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0026E15.10 PE=4 SV=2)

HSP 1 Score: 276.9 bits (707), Expect = 4.2e-71
Identity = 173/406 (42.61%), Postives = 241/406 (59.36%), Query Frame = 1


Query: 1   MRITGLANSITTLGGSISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLR 60
           MRI GLAN++ TLG +I+E E+V+K+LQVVP+HL+Q+AISIETLLDVN+L++EEV GRLR
Sbjct: 160 MRIGGLANNLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLR 219

Query: 61  NIEQRKKNIVSA----VDQEGRLLLTEEEWLA----CLKLCDDTGESNGPSSRKGGKKPW 120
           ++EQRK+   +A    VD  GRLL TEEEWLA       L D    S+G   R+G  +  
Sbjct: 220 SVEQRKQCKTAAASSRVDANGRLLFTEEEWLAKFRKAASLQDAAHSSSGNGDRRGRGRGK 279

Query: 121 KSRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRDHLSKNCWSKLRNKETLEKAHVAQSEED 180
           K       KE   K   P    P  C  CGKR H +K+C    R+K   ++A+VAQ E++
Sbjct: 280 KD--DGAPKEAQPKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQQAYVAQEEDE 339

Query: 181 EPTLFMVTASVLPDVPNSDSKSIEVIDDDIIAPVSVKPEEELPKSTEVIDDGITTPVSVE 240
           EP L +    + P  P             + AP +V      P++               
Sbjct: 340 EPALLLAKVQLDPPRPR------------VAAPTNVVSPPSAPRA--------------- 399

Query: 241 PEEELQLCITKAPAGEPIQLKEERVFAQIGERGEQQEHRRWVLDTGATNHMTRAKFEFSE 300
                      +P GE + + E +VFAQ+ + GE  +   W+LDTGATNHMT ++  F+E
Sbjct: 400 ----------PSPIGE-LAVVEAKVFAQLDDGGE-HDPAMWILDTGATNHMTGSRSAFAE 459

Query: 301 LDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDVYFISRLKANIVSLGQLNKAG 360
           LD+ + GTV+FGDGSVV IEG  T+LF  + G+H  +  VY+I RL ANIVSLGQL+++G
Sbjct: 460 LDTAVTGTVRFGDGSVVRIEGRVTVLFSCRFGEHRGIAGVYYIPRLTANIVSLGQLDRSG 519

Query: 361 CHISIKRGLLRIRDDRRRLLTQVRCTANCLYILELEIEQPVNLSAR 399
             + I  G+L + D R  LL +VR + +CLY ++L+I++PV L+AR
Sbjct: 520 SKVLIHHGILHVWDPRGHLLVRVRRSDDCLYTIKLDIDRPVCLAAR 520

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BLAST of CmaCh19G002660 vs. TrEMBL
Match: Q8SAW7_ORYSJ (Putative pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os10g07460 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 9.4e-71
Identity = 175/409 (42.79%), Postives = 240/409 (58.68%), Query Frame = 1


Query: 1   MRITGLANSITTLGGSISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLR 60
           MRI GLAN++ TLG +I+E E+V+K+LQVVP+HL+Q+AISIETLLDVN++++EEV GRLR
Sbjct: 254 MRIGGLANNLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNEVSLEEVTGRLR 313

Query: 61  NIEQRKKNIVSA----VDQEGRLLLTEEEWLA----CLKLCDDTGESNGPSSRKG---GK 120
           ++EQRK+   +A    VD  GRLL TEEEWLA       L D    S G    +G   GK
Sbjct: 314 SVEQRKQRKTAAASSQVDANGRLLFTEEEWLAKFRKAASLQDAAHSSGGNGDHRGRGRGK 373

Query: 121 KPWKSRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRDHLSKNCWSKLRNKETLEKAHVAQS 180
           K   +      KE   K   P    P  C  CGKR H +K+C    R+K   ++A+VAQ 
Sbjct: 374 KDGGA-----PKEAQPKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQQAYVAQE 433

Query: 181 EEDEPTLFMVTASVLPDVPNSDSKSIEVIDDDIIAPVSVKPEEELPKSTEVIDDGITTPV 240
           E++EP L +    + P  P             + AP +V      P++            
Sbjct: 434 EDEEPALLLAKVQLDPPRPR------------VAAPTNVVSPPSAPRA------------ 493

Query: 241 SVEPEEELQLCITKAPAGEPIQLKEERVFAQIGERGEQQEHRRWVLDTGATNHMTRAKFE 300
                         +P GE + + E RVFAQ+ + GE  +   W+LDTGATNHMT ++  
Sbjct: 494 -------------PSPMGE-LAVVEARVFAQLDDGGE-HDPAMWILDTGATNHMTGSRSA 553

Query: 301 FSELDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDVYFISRLKANIVSLGQLN 360
           F+ELD+ + GTV+FGDGSVV IEG  T+LF  + G+H  +  VY+I RL ANIVSLGQL+
Sbjct: 554 FAELDTVVTGTVRFGDGSVVRIEGRGTVLFSCRFGEHRGIAGVYYIPRLMANIVSLGQLD 613

Query: 361 KAGCHISIKRGLLRIRDDRRRLLTQVRCTANCLYILELEIEQPVNLSAR 399
           ++G  + I  G+LR+ D R  LL +VR + +CLY + L I++PV L+AR
Sbjct: 614 RSGSKVLIHHGVLRVWDPRGHLLVRVRRSDDCLYTINLYIDRPVCLAAR 614

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BLAST of CmaCh19G002660 vs. TrEMBL
Match: A0B9X7_ORYSA (OSIGBa0135C09.3 protein OS=Oryza sativa GN=OSIGBa0135C09.3 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.0e-69
Identity = 169/405 (41.73%), Postives = 241/405 (59.51%), Query Frame = 1


Query: 1   MRITGLANSITTLGGSISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLR 60
           MRI GLAN++  LG +I+E E+V+K+LQVVP+HL+Q+AISIETLLDVN+L++EEV G LR
Sbjct: 93  MRIGGLANNLRILGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGCLR 152

Query: 61  NIEQRKKNIVSA----VDQEGRLLLTEEEWLACLKLC---DDTGESNGPSSRKGGKKPWK 120
           ++EQRK++  +A    VD  GRLL TEEEWLA  +      D   S+G +  + G+   K
Sbjct: 153 SVEQRKQHKTAAASSRVDANGRLLFTEEEWLAKFRKAASLQDAAHSSGGNGDRQGRGRGK 212

Query: 121 SRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRDHLSKNCWSKLRNKETLEKAHVAQSEEDE 180
            +     KE   K   P    P  C  CGKR H +K+C    R+K   ++A+VAQ E++E
Sbjct: 213 -KDDGAPKEAQSKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQQAYVAQEEDEE 272

Query: 181 PTLFMVTASVLPDVPNSDSKSIEVIDDDIIAPVSVKPEEELPKSTEVIDDGITTPVSVEP 240
           P L +    + P  P             + AP +V      P++                
Sbjct: 273 PALLLAKVQLDPPRPR------------VAAPTNVVSPPSAPRA---------------- 332

Query: 241 EEELQLCITKAPAGEPIQLKEERVFAQIGERGEQQEHRRWVLDTGATNHMTRAKFEFSEL 300
                     +P GE + + E +VFAQ+ + GE  +   W+LDTGATNHMT ++  F++L
Sbjct: 333 ---------PSPMGE-LAVVEAKVFAQLDDGGE-HDPAMWILDTGATNHMTGSRSAFAKL 392

Query: 301 DSGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDVYFISRLKANIVSLGQLNKAGC 360
           D+ + GTV+FGDGSVV IEG  T+LF  + G+H  +  VY+I RL ANIVSLGQL+++G 
Sbjct: 393 DTAVTGTVRFGDGSVVRIEGRGTVLFSCRFGEHRGIAGVYYIPRLTANIVSLGQLDRSGS 452

Query: 361 HISIKRGLLRIRDDRRRLLTQVRCTANCLYILELEIEQPVNLSAR 399
            + I  G+LR+ D R  LL +VR + +CLY ++L I++PV L+AR
Sbjct: 453 KVLIHHGVLRVWDPRGHLLVRVRRSDDCLYTIKLNIDRPVYLAAR 453

[Close]

BLAST of CmaCh19G002660 vs. TrEMBL
Match: C7J163_ORYSJ (Os04g0196500 protein OS=Oryza sativa subsp. japonica GN=Os04g0196500 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.3e-69
Identity = 169/401 (42.14%), Postives = 237/401 (59.10%), Query Frame = 1


Query: 1   MRITGLANSITTLGGSISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLR 60
           MRI GLAN++ TLG +I+E E+V+K+LQVVP+HL+Q+AISIETLLDVN+L++EEV GRLR
Sbjct: 1   MRIGGLANNLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLR 60

Query: 61  NIEQRKKNIVSA----VDQEGRLLLTEEEWLA----CLKLCDDTGESNGPSSRKGGKKPW 120
           ++EQRK+   +A    VD  GRLL TEEEWLA       L D    S+G   R+G  +  
Sbjct: 61  SVEQRKQCKTAAASSRVDANGRLLFTEEEWLAKFRKAASLQDAAHSSSGNGDRRGRGRGK 120

Query: 121 KSRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRDHLSKNCWSKLRNKETLEKAHVAQSEED 180
           K       KE   K   P    P  C  CGKR H +K+C    R+K   ++A+VAQ E++
Sbjct: 121 KD--DGAPKEAQPKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQQAYVAQEEDE 180

Query: 181 EPTLFMVTASVLPDVPNSDSKSIEVIDDDIIAPVSVKPEEELPKSTEVIDDGITTPVSVE 240
           EP L +    + P  P             + AP +V      P++               
Sbjct: 181 EPALLLAKVQLDPPRPR------------VAAPTNVVSPPSAPRA--------------- 240

Query: 241 PEEELQLCITKAPAGEPIQLKEERVFAQIGERGEQQEHRRWVLDTGATNHMTRAKFEFSE 300
                      +P GE + + E +VFAQ+ + GE  +   W+LDTGATNHMT ++  F+E
Sbjct: 241 ----------PSPIGE-LAVVEAKVFAQLDDGGE-HDPAMWILDTGATNHMTGSRSAFAE 300

Query: 301 LDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDVYFISRLKANIVSLGQLNKAG 360
           LD+ + GTV+FGDGSVV IEG  T+LF  + G+H  +  VY+I RL ANIVSLGQL+++G
Sbjct: 301 LDTAVTGTVRFGDGSVVRIEGRVTVLFSCRFGEHRGIAGVYYIPRLTANIVSLGQLDRSG 356

Query: 361 CHISIKRGLLRIRDDRRRLLTQVRCTANCLYILELEIEQPV 394
             + I  G+L + D R  LL +VR + +CLY ++L+I++P+
Sbjct: 361 SKVLIHHGILHVWDPRGHLLVRVRRSDDCLYTIKLDIDRPL 356

[Close]

BLAST of CmaCh19G002660 vs. TrEMBL
Match: Q2QYR6_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g01790 PE=4 SV=2)

HSP 1 Score: 253.1 bits (645), Expect = 6.5e-64
Identity = 169/404 (41.83%), Postives = 232/404 (57.43%), Query Frame = 1


Query: 1   MRITGLANSITTLGGSISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLR 60
           +R+TGLAN +  LG  I + ++VKKML+VVP +LEQVAISIETLLD+  +++EEVIGRLR
Sbjct: 99  LRLTGLANELRMLGDPIIDKDVVKKMLEVVPKYLEQVAISIETLLDLATVSIEEVIGRLR 158

Query: 61  NIEQRKKNIVS-AVDQEGRLLLTEEEWLACLKLCDDTGESNGPSSRKGGKKPWKSRRHMR 120
            +EQRKK   S A D  GRLLLTEE+WLA  K  +   +        GG +   +RR  R
Sbjct: 159 AVEQRKKPASSEAKDSSGRLLLTEEDWLARYKAREQEKKGGSSGGNGGGGR---NRRRGR 218

Query: 121 GK-----EEDQKKEEPTDDEPIQCSYCGKRDHLSKNCWSKLRNKETLEKAHVAQSEEDEP 180
           GK     E ++      D +   C  CGK  H +++C SK        +AH+AQ  E+E 
Sbjct: 219 GKGRGGGESNRTDTSGQDGQGNTCRNCGKAGHWARDCISKPMKSG---EAHLAQ--EEEA 278

Query: 181 TLFMVTASVLPDVPNSDSKSIEVIDDDIIAPVSVKPEEELPKSTEVIDDGITTPVSVEPE 240
           TL +     +   P+S S            P  +      P  +  +     TP++    
Sbjct: 279 TLLLGEVCTISLTPSSVSPPTS-------PPPPLYRASAPPADSTSLPHRAPTPLTDSLV 338

Query: 241 EELQLCITKAPAGEPIQLKEERVFAQIGERGEQQEHRRWVLDTGATNHMTRAKFEFSELD 300
            E  L    +   E I L EE+V AQ+    EQ++ RRWV+DTGATNHM+ A+  FS LD
Sbjct: 339 REPILPPVPSQVREKIHLVEEKVHAQLYNE-EQKDDRRWVVDTGATNHMSGAQSAFSNLD 398

Query: 301 SGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDVYFISRLKANIVSLGQLNKAGCH 360
           S + G+VKFGDGSVV IEG  T++F  K G+H   TDVYFI +L+ NI+S+GQL++ G  
Sbjct: 399 STVSGSVKFGDGSVVRIEGRGTVIFDCKNGEHRFFTDVYFIPKLQTNIISVGQLDEIGGE 458

Query: 361 ISIKRGLLRIRDDRRRLLTQVRCTANCLYILELEIEQPVNLSAR 399
             +  G LR+RD+  RLL ++ CT + LY+L+L I      +AR
Sbjct: 459 ALVHGGFLRMRDEDGRLLAKIPCTPSRLYVLDLTISWAGCFAAR 486

[Close]

BLAST of CmaCh19G002660 vs. NCBI nr
Match: gi|38344222|emb|CAE03692.2| (OSJNBb0026E15.10 [Oryza sativa Japonica Group])

HSP 1 Score: 276.9 bits (707), Expect = 6.0e-71
Identity = 173/406 (42.61%), Postives = 241/406 (59.36%), Query Frame = 1


Query: 1   MRITGLANSITTLGGSISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLR 60
           MRI GLAN++ TLG +I+E E+V+K+LQVVP+HL+Q+AISIETLLDVN+L++EEV GRLR
Sbjct: 160 MRIGGLANNLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLR 219

Query: 61  NIEQRKKNIVSA----VDQEGRLLLTEEEWLA----CLKLCDDTGESNGPSSRKGGKKPW 120
           ++EQRK+   +A    VD  GRLL TEEEWLA       L D    S+G   R+G  +  
Sbjct: 220 SVEQRKQCKTAAASSRVDANGRLLFTEEEWLAKFRKAASLQDAAHSSSGNGDRRGRGRGK 279

Query: 121 KSRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRDHLSKNCWSKLRNKETLEKAHVAQSEED 180
           K       KE   K   P    P  C  CGKR H +K+C    R+K   ++A+VAQ E++
Sbjct: 280 KD--DGAPKEAQPKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQQAYVAQEEDE 339

Query: 181 EPTLFMVTASVLPDVPNSDSKSIEVIDDDIIAPVSVKPEEELPKSTEVIDDGITTPVSVE 240
           EP L +    + P  P             + AP +V      P++               
Sbjct: 340 EPALLLAKVQLDPPRPR------------VAAPTNVVSPPSAPRA--------------- 399

Query: 241 PEEELQLCITKAPAGEPIQLKEERVFAQIGERGEQQEHRRWVLDTGATNHMTRAKFEFSE 300
                      +P GE + + E +VFAQ+ + GE  +   W+LDTGATNHMT ++  F+E
Sbjct: 400 ----------PSPIGE-LAVVEAKVFAQLDDGGE-HDPAMWILDTGATNHMTGSRSAFAE 459

Query: 301 LDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDVYFISRLKANIVSLGQLNKAG 360
           LD+ + GTV+FGDGSVV IEG  T+LF  + G+H  +  VY+I RL ANIVSLGQL+++G
Sbjct: 460 LDTAVTGTVRFGDGSVVRIEGRVTVLFSCRFGEHRGIAGVYYIPRLTANIVSLGQLDRSG 519

Query: 361 CHISIKRGLLRIRDDRRRLLTQVRCTANCLYILELEIEQPVNLSAR 399
             + I  G+L + D R  LL +VR + +CLY ++L+I++PV L+AR
Sbjct: 520 SKVLIHHGILHVWDPRGHLLVRVRRSDDCLYTIKLDIDRPVCLAAR 520

[Close]

BLAST of CmaCh19G002660 vs. NCBI nr
Match: gi|18652506|gb|AAL77140.1|AC097447_6 (Putative pol polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 275.8 bits (704), Expect = 1.3e-70
Identity = 175/409 (42.79%), Postives = 240/409 (58.68%), Query Frame = 1


Query: 1   MRITGLANSITTLGGSISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLR 60
           MRI GLAN++ TLG +I+E E+V+K+LQVVP+HL+Q+AISIETLLDVN++++EEV GRLR
Sbjct: 254 MRIGGLANNLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNEVSLEEVTGRLR 313

Query: 61  NIEQRKKNIVSA----VDQEGRLLLTEEEWLA----CLKLCDDTGESNGPSSRKG---GK 120
           ++EQRK+   +A    VD  GRLL TEEEWLA       L D    S G    +G   GK
Sbjct: 314 SVEQRKQRKTAAASSQVDANGRLLFTEEEWLAKFRKAASLQDAAHSSGGNGDHRGRGRGK 373

Query: 121 KPWKSRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRDHLSKNCWSKLRNKETLEKAHVAQS 180
           K   +      KE   K   P    P  C  CGKR H +K+C    R+K   ++A+VAQ 
Sbjct: 374 KDGGA-----PKEAQPKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQQAYVAQE 433

Query: 181 EEDEPTLFMVTASVLPDVPNSDSKSIEVIDDDIIAPVSVKPEEELPKSTEVIDDGITTPV 240
           E++EP L +    + P  P             + AP +V      P++            
Sbjct: 434 EDEEPALLLAKVQLDPPRPR------------VAAPTNVVSPPSAPRA------------ 493

Query: 241 SVEPEEELQLCITKAPAGEPIQLKEERVFAQIGERGEQQEHRRWVLDTGATNHMTRAKFE 300
                         +P GE + + E RVFAQ+ + GE  +   W+LDTGATNHMT ++  
Sbjct: 494 -------------PSPMGE-LAVVEARVFAQLDDGGE-HDPAMWILDTGATNHMTGSRSA 553

Query: 301 FSELDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDVYFISRLKANIVSLGQLN 360
           F+ELD+ + GTV+FGDGSVV IEG  T+LF  + G+H  +  VY+I RL ANIVSLGQL+
Sbjct: 554 FAELDTVVTGTVRFGDGSVVRIEGRGTVLFSCRFGEHRGIAGVYYIPRLMANIVSLGQLD 613

Query: 361 KAGCHISIKRGLLRIRDDRRRLLTQVRCTANCLYILELEIEQPVNLSAR 399
           ++G  + I  G+LR+ D R  LL +VR + +CLY + L I++PV L+AR
Sbjct: 614 RSGSKVLIHHGVLRVWDPRGHLLVRVRRSDDCLYTINLYIDRPVCLAAR 614

[Close]

BLAST of CmaCh19G002660 vs. NCBI nr
Match: gi|116634828|emb|CAH66352.1| (OSIGBa0135C09.3 [Oryza sativa Indica Group])

HSP 1 Score: 272.3 bits (695), Expect = 1.5e-69
Identity = 169/405 (41.73%), Postives = 241/405 (59.51%), Query Frame = 1


Query: 1   MRITGLANSITTLGGSISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLR 60
           MRI GLAN++  LG +I+E E+V+K+LQVVP+HL+Q+AISIETLLDVN+L++EEV G LR
Sbjct: 93  MRIGGLANNLRILGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGCLR 152

Query: 61  NIEQRKKNIVSA----VDQEGRLLLTEEEWLACLKLC---DDTGESNGPSSRKGGKKPWK 120
           ++EQRK++  +A    VD  GRLL TEEEWLA  +      D   S+G +  + G+   K
Sbjct: 153 SVEQRKQHKTAAASSRVDANGRLLFTEEEWLAKFRKAASLQDAAHSSGGNGDRQGRGRGK 212

Query: 121 SRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRDHLSKNCWSKLRNKETLEKAHVAQSEEDE 180
            +     KE   K   P    P  C  CGKR H +K+C    R+K   ++A+VAQ E++E
Sbjct: 213 -KDDGAPKEAQSKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQQAYVAQEEDEE 272

Query: 181 PTLFMVTASVLPDVPNSDSKSIEVIDDDIIAPVSVKPEEELPKSTEVIDDGITTPVSVEP 240
           P L +    + P  P             + AP +V      P++                
Sbjct: 273 PALLLAKVQLDPPRPR------------VAAPTNVVSPPSAPRA---------------- 332

Query: 241 EEELQLCITKAPAGEPIQLKEERVFAQIGERGEQQEHRRWVLDTGATNHMTRAKFEFSEL 300
                     +P GE + + E +VFAQ+ + GE  +   W+LDTGATNHMT ++  F++L
Sbjct: 333 ---------PSPMGE-LAVVEAKVFAQLDDGGE-HDPAMWILDTGATNHMTGSRSAFAKL 392

Query: 301 DSGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDVYFISRLKANIVSLGQLNKAGC 360
           D+ + GTV+FGDGSVV IEG  T+LF  + G+H  +  VY+I RL ANIVSLGQL+++G 
Sbjct: 393 DTAVTGTVRFGDGSVVRIEGRGTVLFSCRFGEHRGIAGVYYIPRLTANIVSLGQLDRSGS 452

Query: 361 HISIKRGLLRIRDDRRRLLTQVRCTANCLYILELEIEQPVNLSAR 399
            + I  G+LR+ D R  LL +VR + +CLY ++L I++PV L+AR
Sbjct: 453 KVLIHHGVLRVWDPRGHLLVRVRRSDDCLYTIKLNIDRPVYLAAR 453

[Close]

BLAST of CmaCh19G002660 vs. NCBI nr
Match: gi|255675204|dbj|BAH92510.1| (Os04g0196500 [Oryza sativa Japonica Group])

HSP 1 Score: 271.2 bits (692), Expect = 3.3e-69
Identity = 169/401 (42.14%), Postives = 237/401 (59.10%), Query Frame = 1


Query: 1   MRITGLANSITTLGGSISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLR 60
           MRI GLAN++ TLG +I+E E+V+K+LQVVP+HL+Q+AISIETLLDVN+L++EEV GRLR
Sbjct: 1   MRIGGLANNLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLR 60

Query: 61  NIEQRKKNIVSA----VDQEGRLLLTEEEWLA----CLKLCDDTGESNGPSSRKGGKKPW 120
           ++EQRK+   +A    VD  GRLL TEEEWLA       L D    S+G   R+G  +  
Sbjct: 61  SVEQRKQCKTAAASSRVDANGRLLFTEEEWLAKFRKAASLQDAAHSSSGNGDRRGRGRGK 120

Query: 121 KSRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRDHLSKNCWSKLRNKETLEKAHVAQSEED 180
           K       KE   K   P    P  C  CGKR H +K+C    R+K   ++A+VAQ E++
Sbjct: 121 KD--DGAPKEAQPKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQQAYVAQEEDE 180

Query: 181 EPTLFMVTASVLPDVPNSDSKSIEVIDDDIIAPVSVKPEEELPKSTEVIDDGITTPVSVE 240
           EP L +    + P  P             + AP +V      P++               
Sbjct: 181 EPALLLAKVQLDPPRPR------------VAAPTNVVSPPSAPRA--------------- 240

Query: 241 PEEELQLCITKAPAGEPIQLKEERVFAQIGERGEQQEHRRWVLDTGATNHMTRAKFEFSE 300
                      +P GE + + E +VFAQ+ + GE  +   W+LDTGATNHMT ++  F+E
Sbjct: 241 ----------PSPIGE-LAVVEAKVFAQLDDGGE-HDPAMWILDTGATNHMTGSRSAFAE 300

Query: 301 LDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDVYFISRLKANIVSLGQLNKAG 360
           LD+ + GTV+FGDGSVV IEG  T+LF  + G+H  +  VY+I RL ANIVSLGQL+++G
Sbjct: 301 LDTAVTGTVRFGDGSVVRIEGRVTVLFSCRFGEHRGIAGVYYIPRLTANIVSLGQLDRSG 356

Query: 361 CHISIKRGLLRIRDDRRRLLTQVRCTANCLYILELEIEQPV 394
             + I  G+L + D R  LL +VR + +CLY ++L+I++P+
Sbjct: 361 SKVLIHHGILHVWDPRGHLLVRVRRSDDCLYTIKLDIDRPL 356

[Close]

BLAST of CmaCh19G002660 vs. NCBI nr
Match: gi|108862086|gb|ABA96192.2| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 253.1 bits (645), Expect = 9.3e-64
Identity = 169/404 (41.83%), Postives = 232/404 (57.43%), Query Frame = 1


Query: 1   MRITGLANSITTLGGSISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLR 60
           +R+TGLAN +  LG  I + ++VKKML+VVP +LEQVAISIETLLD+  +++EEVIGRLR
Sbjct: 99  LRLTGLANELRMLGDPIIDKDVVKKMLEVVPKYLEQVAISIETLLDLATVSIEEVIGRLR 158

Query: 61  NIEQRKKNIVS-AVDQEGRLLLTEEEWLACLKLCDDTGESNGPSSRKGGKKPWKSRRHMR 120
            +EQRKK   S A D  GRLLLTEE+WLA  K  +   +        GG +   +RR  R
Sbjct: 159 AVEQRKKPASSEAKDSSGRLLLTEEDWLARYKAREQEKKGGSSGGNGGGGR---NRRRGR 218

Query: 121 GK-----EEDQKKEEPTDDEPIQCSYCGKRDHLSKNCWSKLRNKETLEKAHVAQSEEDEP 180
           GK     E ++      D +   C  CGK  H +++C SK        +AH+AQ  E+E 
Sbjct: 219 GKGRGGGESNRTDTSGQDGQGNTCRNCGKAGHWARDCISKPMKSG---EAHLAQ--EEEA 278

Query: 181 TLFMVTASVLPDVPNSDSKSIEVIDDDIIAPVSVKPEEELPKSTEVIDDGITTPVSVEPE 240
           TL +     +   P+S S            P  +      P  +  +     TP++    
Sbjct: 279 TLLLGEVCTISLTPSSVSPPTS-------PPPPLYRASAPPADSTSLPHRAPTPLTDSLV 338

Query: 241 EELQLCITKAPAGEPIQLKEERVFAQIGERGEQQEHRRWVLDTGATNHMTRAKFEFSELD 300
            E  L    +   E I L EE+V AQ+    EQ++ RRWV+DTGATNHM+ A+  FS LD
Sbjct: 339 REPILPPVPSQVREKIHLVEEKVHAQLYNE-EQKDDRRWVVDTGATNHMSGAQSAFSNLD 398

Query: 301 SGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDVYFISRLKANIVSLGQLNKAGCH 360
           S + G+VKFGDGSVV IEG  T++F  K G+H   TDVYFI +L+ NI+S+GQL++ G  
Sbjct: 399 STVSGSVKFGDGSVVRIEGRGTVIFDCKNGEHRFFTDVYFIPKLQTNIISVGQLDEIGGE 458

Query: 361 ISIKRGLLRIRDDRRRLLTQVRCTANCLYILELEIEQPVNLSAR 399
             +  G LR+RD+  RLL ++ CT + LY+L+L I      +AR
Sbjct: 459 ALVHGGFLRMRDEDGRLLAKIPCTPSRLYVLDLTISWAGCFAAR 486

The following BLAST results are available for this feature:

BLAST of CmaCh19G002660 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh19G002660 vs. TrEMBL


Match Name	E-value	Identity	Description
Q7XPB1_ORYSJ	4.2e-71	42.61	OSJNBb0026E15.10 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0026E15.10 PE=...	[more]
Q8SAW7_ORYSJ	9.4e-71	42.79	Putative pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os10g07460 PE=4 ...	[more]
A0B9X7_ORYSA	1.0e-69	41.73	OSIGBa0135C09.3 protein OS=Oryza sativa GN=OSIGBa0135C09.3 PE=4 SV=1	[more]
C7J163_ORYSJ	2.3e-69	42.14	Os04g0196500 protein OS=Oryza sativa subsp. japonica GN=Os04g0196500 PE=4 SV=1	[more]
Q2QYR6_ORYSJ	6.5e-64	41.83	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap...	[more]

BLAST of CmaCh19G002660 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh19G002660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|38344222\|emb\|CAE03692.2\|	6.0e-71	42.61	OSJNBb0026E15.10 [Oryza sativa Japonica Group]	[more]
gi\|18652506\|gb\|AAL77140.1\|AC097447_6	1.3e-70	42.79	Putative pol polyprotein [Oryza sativa Japonica Group]	[more]
gi\|116634828\|emb\|CAH66352.1\|	1.5e-69	41.73	OSIGBa0135C09.3 [Oryza sativa Indica Group]	[more]
gi\|255675204\|dbj\|BAH92510.1\|	3.3e-69	42.14	Os04g0196500 [Oryza sativa Japonica Group]	[more]
gi\|108862086\|gb\|ABA96192.2\|	9.3e-64	41.83	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G002660.1	CmaCh19G002660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 132..154 score: 5.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 137..153 score: 0.
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..174 score: 5.3E-92coord: 259..405 score: 5.3
None	No IPR available	PANTHER	PTHR11439:SF127	SUBFAMILY NOT NAMED	coord: 259..405 score: 5.3E-92coord: 1..174 score: 5.3
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 2..68 score: 3.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G002660	Watermelon (Charleston Gray)	cmawcgB444
CmaCh19G002660	Watermelon (97103) v1	cmawmB479
CmaCh19G002660	Cucurbita pepo (Zucchini)	cmacpeB522
CmaCh19G002660	Cucurbita pepo (Zucchini)	cmacpeB538
CmaCh19G002660	Bottle gourd (USVL1VR-Ls)	cmalsiB482
CmaCh19G002660	Cucumber (Gy14) v2	cgybcmaB949
CmaCh19G002660	Melon (DHL92) v3.6.1	cmamedB528
CmaCh19G002660	Silver-seed gourd	carcmaB0916
CmaCh19G002660	Silver-seed gourd	carcmaB1029
CmaCh19G002660	Cucumber (Chinese Long) v3	cmacucB0642
CmaCh19G002660	Watermelon (97103) v2	cmawmbB552
CmaCh19G002660	Wax gourd	cmawgoB0655
CmaCh19G002660	Cucurbita maxima (Rimu)	cmacmaB153
CmaCh19G002660	Cucumber (Gy14) v1	cgycmaB0625
CmaCh19G002660	Cucurbita moschata (Rifu)	cmacmoB493
CmaCh19G002660	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G002660	Wild cucumber (PI 183967)	cmacpiB538
CmaCh19G002660	Cucumber (Chinese Long) v2	cmacuB532
CmaCh19G002660	Melon (DHL92) v3.5.1	cmameB455