CmaCh19G002020 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G002020
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr19 : 1338187 .. 1340518 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCACCGAATCACATAGCCGAAGAAGAAGAATTCAACACGACAAAACACACTCGATTTCAATCAGAAACAAAGACAGTGCAGGAAATCATCAATGGCGGGGGAGAGAGGAAGCAAATGGAGCGAAGGACGGCGACGAATATGAAGGTATCACTAAATCCAAATAGAAAATTAGAATATACAAAGCGCCGATTCTCTTTTCTTAACAATGCTCTCGACGGCTACTAGCCGTCCGATTCATCTTCATCTTAAATTGGACGGAGGAGAATGCGAACTTCACGAGGGAGAGACAGGCTCACTATGGAAGCAATGTAGAGAGTAGTTTCCACATGCCACGTGGATGCCAGCGTGGGTTATTCGACCGGCGTACGCGGTTAAAGGAATATTCCTGGAGTCACGTGGCGCATGGGTATGATGCAAAAGTAAATTCATTTTTCAATTTTGTAAACAAAAGGTGCCCGTACTGCCCAAACGGAAAGATGTCCTTTAATCATTTCTTCGGTCAGCCTGATTTTTCGGCCGAGACTGCGGGCTAGTCCCGCGAGAACACGACTCTTCACAATAATGATATGATGTTGTCTACTTTGAGCATAAGCTTTCATCACTCTACTCTAGGGTTTCCCAAAATGCCTCATACCAATAAAGAGAGTATTCATTGATTATAAACGCATAAACATCCCTTAAATTAGCAGTGGGACTTTCATCCAACACCTCCCCTCGAATAAAGTATGTCTCCGCTTAGTTGAGACTCGACTCTATTTCTTTTGAAGTATTTGACTTCTTTTTCTTTTGAAGTCTTTTGTTCGACATTTAAGAATTCTATTGACATGACTAATTTTAAGGTATGACTCTGATACCATGTTAGACGAACGACCATGAAAATTATGTTTCGAGTCTAGTAGCTCAGTCCCTTTAAGTTCAAACTTGGCTAGGATCGATATCTCATCTAAATTAAATTTCATTTCGAAGTTATATAAAATCGAGTTGTGTTATCATTTTTTTTTAATAAATATTATTTAAATGTAATGGTAATAAATATCTCATCTAATTTAAATATTATTTAATTTAACGAAGGAACCGCGACTATGGGTAGAGCGGCCCAATTGTAATTGGGCCTCAGCTACAAATTCGGCCCAAATTCGTGAAAAAGTGTGGAAAGGTGCCAACACCAATTCGCCAAGCGTAGTTTTCTTTCTCTCTCTGAAAAGTTCCCTTTCGCCATTAAAGGACGACGGCGTCGACGACGACGATTCTCACGTGGTGCGCCAAGCTCCGATCGGTGGCGACGATGCCATCTCAAATAGTAATTGAAGGATTCTTCTCGAGGTATGTCTTATCTCATCTTAAGGACTCGATTATTGGTAGTATCGAACAAGGCGTGAAAACTCGTTCTTTTATTAATTTATTTAATAATTTTGCTTCTACATCATGCCATAATTATAGCTTAAAACAAGCTCGGTTATAGGGAGTTAATATCATATCTAATCCTTTTTTAAATTTTCTAAATGTATATCTAATGAGTTTGAGATGAGTATGATTGGAGAGCTTAGTTTCTTACTGACTTCAAACAACTCAAAGATGATATCTTCATAAATCAAGAGAAATAAATTACGGATTTACTCAAAAGATTCAAGTTCAGTGAAAATAAGATTGCAAAAACTCTCACGAGCACGTCCACTAAGCATGACAATGATAAAAAAGGTAAATGTGTGGATATTAAATCTTTTCGAGATATGATTGAATCTTTACTTTCTTTAACCGCTAATAGACCCAATATTTTCCTATAAATGTTGTTTTTAAATTGGTAGGATGTTTTGATGCGGATTTTGCTGGAAATTTACTTGATTGTAGAAGTACTGAGAGAACTTGTCAATTTTTTGGTAAATTTGGTTGTCTTATCTACTACGGAAGCGGGAATATAATCATAATAATAGGCAAGGTATAGTAAACTACATAACTAAACAATTTATCATTCAATGTTCAACATGTTTTCAATCCCGACACATTTTATAAATCAAACTCAATCATCTATAACATTGAATGATAGGTCATATCCAAGTCGATCTTTGGAGGAAGTTTTCCAATTAGCTAAACCACTAAGGAATGCATGTTTTTGTCTTCTCCTTCCTCATCGCCGACCGTTAATTCGTATACAATTCTTTAAGATACGTATGTAGGTGTCTTGGCGGGTTTTACCCCAACTAATTTTGAAAGTACGTATACACCTTCTAACCATTATTCTTTTGACATTGTTGCATTTTGTAGGGACCGGAATCTCGTTGGTGTAAGGAACTGTTCAGAATTTGTGGTCACAGACTCGAGTTCTTTTAG

mRNA sequence

ATGTTCACCGAATCACATAGCCGAAGAAGAAGAATTCAACACGACAAAACACACTCGATTTCAATCAGAAACAAAGACAGTGCAGGAAATCATCAATGGCGGGGGAGAGAGGAAGCAAATGGAGCGAAGGACGGCGACGAATATGAAGCCGTCCGATTCATCTTCATCTTAAATTGGACGGAGGAGAATGCGAACTTCACGAGGGAGAGACAGGCTCACTATGGAAGCAATGTAGAGAGTAGTTTCCACATGCCACGTGGATGCCAGCGTGGGTTATTCGACCGGCGTACGCGGTTAAAGGAATATTCCTGGAGTCACGTGGCGCATGGGTATGATGCAAAAGGACCGGAATCTCGTTGGTGTAAGGAACTGTTCAGAATTTGTGGTCACAGACTCGAGTTCTTTTAG

Coding sequence (CDS)

ATGTTCACCGAATCACATAGCCGAAGAAGAAGAATTCAACACGACAAAACACACTCGATTTCAATCAGAAACAAAGACAGTGCAGGAAATCATCAATGGCGGGGGAGAGAGGAAGCAAATGGAGCGAAGGACGGCGACGAATATGAAGCCGTCCGATTCATCTTCATCTTAAATTGGACGGAGGAGAATGCGAACTTCACGAGGGAGAGACAGGCTCACTATGGAAGCAATGTAGAGAGTAGTTTCCACATGCCACGTGGATGCCAGCGTGGGTTATTCGACCGGCGTACGCGGTTAAAGGAATATTCCTGGAGTCACGTGGCGCATGGGTATGATGCAAAAGGACCGGAATCTCGTTGGTGTAAGGAACTGTTCAGAATTTGTGGTCACAGACTCGAGTTCTTTTAG

Protein sequence

MFTESHSRRRRIQHDKTHSISIRNKDSAGNHQWRGREEANGAKDGDEYEAVRFIFILNWTEENANFTRERQAHYGSNVESSFHMPRGCQRGLFDRRTRLKEYSWSHVAHGYDAKGPESRWCKELFRICGHRLEFF
Homology
[Close]
BLAST of CmaCh19G002020 vs. TrEMBL
Match: A0A0A0L981_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G638000 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-08
Identity = 36/80 (45.00%), Postives = 44/80 (55.00%), Query Frame = 1 

Query: 40  NGAKDGDEYEAVRFIFILNWTEENANFTR------ERQAHYGSNVESSFHMPRGCQRGLF 99
           NG ++G + E      +      N    R       RQA    NV+ S ++PRGCQRGLF
Sbjct: 8   NGGEEGKQMERRTATNMKGALNPNRKIKRMRILRERRQAQRLGNVDDSLYVPRGCQRGLF 67

Query: 100 DRRTRLKEYSWSHVAHGYDA 114
            R TR+KEYSWSHVA GY A
Sbjct: 68  GRLTRMKEYSWSHVARGYVA 87

[Close]
BLAST of CmaCh19G002020 vs. NCBI nr
Match: gi|700203270|gb|KGN58403.1| (hypothetical protein Csa_3G638000 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 2.9e-08
Identity = 36/80 (45.00%), Postives = 44/80 (55.00%), Query Frame = 1 

Query: 40  NGAKDGDEYEAVRFIFILNWTEENANFTR------ERQAHYGSNVESSFHMPRGCQRGLF 99
           NG ++G + E      +      N    R       RQA    NV+ S ++PRGCQRGLF
Sbjct: 8   NGGEEGKQMERRTATNMKGALNPNRKIKRMRILRERRQAQRLGNVDDSLYVPRGCQRGLF 67

Query: 100 DRRTRLKEYSWSHVAHGYDA 114
            R TR+KEYSWSHVA GY A
Sbjct: 68  GRLTRMKEYSWSHVARGYVA 87

The following BLAST results are available for this feature:
BLAST of CmaCh19G002020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh19G002020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L981_CUCSA2.0e-0845.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G638000 PE=4 SV=1[more]
BLAST of CmaCh19G002020 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh19G002020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203270|gb|KGN58403.1|2.9e-0845.00hypothetical protein Csa_3G638000 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G002020.1CmaCh19G002020.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh19G002020Csa3G638000Cucumber (Chinese Long) v2cmacuB509
CmaCh19G002020CSPI03G27990Wild cucumber (PI 183967)cmacpiB516
CmaCh19G002020CsaV3_3G030380Cucumber (Chinese Long) v3cmacucB0614
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G002020Cucurbita maxima (Rimu)cmacmaB450
CmaCh19G002020Cucumber (Gy14) v1cgycmaB0413
CmaCh19G002020Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G002020Cucurbita moschata (Rifu)cmacmoB523
CmaCh19G002020Melon (DHL92) v3.5.1cmameB467
CmaCh19G002020Watermelon (Charleston Gray)cmawcgB441
CmaCh19G002020Watermelon (Charleston Gray)cmawcgB470
CmaCh19G002020Watermelon (97103) v1cmawmB471
CmaCh19G002020Watermelon (97103) v1cmawmB490
CmaCh19G002020Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G002020Cucurbita pepo (Zucchini)cmacpeB543
CmaCh19G002020Bottle gourd (USVL1VR-Ls)cmalsiB463
CmaCh19G002020Cucumber (Gy14) v2cgybcmaB375
CmaCh19G002020Melon (DHL92) v3.6.1cmamedB542
CmaCh19G002020Silver-seed gourdcarcmaB0102
CmaCh19G002020Silver-seed gourdcarcmaB1082
CmaCh19G002020Watermelon (97103) v2cmawmbB543
CmaCh19G002020Watermelon (97103) v2cmawmbB548
CmaCh19G002020Wax gourdcmawgoB0653