CmaCh19G001890 (gene) Cucurbita maxima (Rimu)

NameCmaCh19G001890
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNAC transcription factor 081
LocationCma_Chr19 : 1256469 .. 1257880 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCTCATGATTGCCCTCTCTTGCCCGTGGGAGTGAGATTCAAGCCTACTGATCCGCAACTTCTTCAATATCTACACTGGAAAATTCATGGCCAACCATATTTCAAACGTGCAGTCTTGGACTGTGATCTTTATGGAGAAATGGAGCCATGGGAAATCTGGCTACGGTTCGGAGGCATCGACGGCGAACATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTCTGGACGTTTGTCGGCGCATATCAACCGCAAGGTTGGCTTGGCCAACGGTACATGGAGTGGCGAGAACTCAGCCAGTCCAATTTTTGCTACCAAAACCGATAATACAATAATCGGCTATTGCAAACGCTTTAGGTTCGTTTTGTCATTTTGATTTCAATTTTTGATAGATTCTTTAACCTTATGTTTGTGTCCTTTGAACATTTTAGGTACGAAAATGTCCAATTGCCCGAGCGTCATGGCGAATGGATTATGCATGAATATAGCTTGCATCAAGATTCGATACAACAAGCTGTAGATTTAGATTATGTTTTATGCCGATTCAAAAAGAATGAAAGACTTAAAAGAAAATTACAAAAAGATCTCGAGGAGCAGCAACATAGCAAGAGAAGAATGACCACCTGAATTCTTTCATAGTGGAAGTCGTGCACTACAACTAACACTTCAGATGATCCAACCGATTTTAGAATATTAAATATTTGAATTTTATTAGATTTTAGTTATTTATGTAATATTTGAGGAAGATAGATATTTTTTTTAAAATAATTAATAAAATAGAGATTTCGGTTGTAAAATCCAAAATATTAACTAACCTCTCTAATTTCAAAAGCCTTAAAATTCTCTTATAATATTTTCCCTTCAAAATTTTATGATAAAATAATAATAATAATAATATTAATATAATTAAAAAAATAGAAAATCAATAATTTATATATCCTTATTCATTAATATATTATTACTAAATAATTAAACATTTAATTTAATCTAAAGTACAAAAAAATAAATTAAAGACATTATTCTTTTTTTTTTTAAAGTTAAAAAATGTAAGGATATTTTTATTAATTTAGTTTTTTTTTTTTTAAAATTTATAATTTAGCCCTATTTAAAACAAAAATATAAAATGGAGGGAAATGGGGTGCACGCGCCAAGAATACTACTAGCTCGATTAGGAGAGGCGAATGAGACGACGGTAGGGCAGCCGAACACCGGCGCTGAGATCGGCGGAAACTCATGCAAATTCTTCTCAGTTCAGAACCTCAAAGCCTTTCCAGTTTCGTAAACGACGGTTCATCTTCAGGTGTCTTGGGAGTCCATGATTGTTGCTGTCTCGACCTTCATTTCCATTATCCGCTCCCCCGAGCCCCTCACATGATTCTGACTCTAGAGTTTCTGTTCTGA

mRNA sequence

ATGGATTCTCATGATTGCCCTCTCTTGCCCGTGGGAGTGAGATTCAAGCCTACTGATCCGCAACTTCTTCAATATCTACACTGGAAAATTCATGGCCAACCATATTTCAAACGTGCAGTCTTGGACTGTGATCTTTATGGAGAAATGGAGCCATGGGAAATCTGGCTACGGTTCGGAGGCATCGACGGCGAACATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTCTGGACGTTTGTCGGCGCATATCAACCGCAAGGTTGGCTTGGCCAACGGTACATGGAGTGGCGAGAACTCAGCCAGTCCAATTTTTGCTACCAAAACCGATAATACAATAATCGGCTATTGCAAACGCTTTAGTTCAGAACCTCAAAGCCTTTCCAGTTTCGTAAACGACGGTTCATCTTCAGGTGTCTTGGGAGTCCATGATTGTTGCTGTCTCGACCTTCATTTCCATTATCCGCTCCCCCGAGCCCCTCACATGATTCTGACTCTAGAGTTTCTGTTCTGA

Coding sequence (CDS)

ATGGATTCTCATGATTGCCCTCTCTTGCCCGTGGGAGTGAGATTCAAGCCTACTGATCCGCAACTTCTTCAATATCTACACTGGAAAATTCATGGCCAACCATATTTCAAACGTGCAGTCTTGGACTGTGATCTTTATGGAGAAATGGAGCCATGGGAAATCTGGCTACGGTTCGGAGGCATCGACGGCGAACATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTCTGGACGTTTGTCGGCGCATATCAACCGCAAGGTTGGCTTGGCCAACGGTACATGGAGTGGCGAGAACTCAGCCAGTCCAATTTTTGCTACCAAAACCGATAATACAATAATCGGCTATTGCAAACGCTTTAGTTCAGAACCTCAAAGCCTTTCCAGTTTCGTAAACGACGGTTCATCTTCAGGTGTCTTGGGAGTCCATGATTGTTGCTGTCTCGACCTTCATTTCCATTATCCGCTCCCCCGAGCCCCTCACATGATTCTGACTCTAGAGTTTCTGTTCTGA

Protein sequence

MDSHDCPLLPVGVRFKPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGIDGEHLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFATKTDNTIIGYCKRFSSEPQSLSSFVNDGSSSGVLGVHDCCCLDLHFHYPLPRAPHMILTLEFLF
BLAST of CmaCh19G001890 vs. TrEMBL
Match: A0A0A0KXM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G296900 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.2e-44
Identity = 87/119 (73.11%), Postives = 95/119 (79.83%), Query Frame = 1

Query: 11  VGVRFKPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGIDGEHLYFFT 70
           VGV+F+PTD QLL YLH KI+GQPYF+ AV D DLYG +EPWEIW  FGGIDGE LYFFT
Sbjct: 16  VGVKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWQSFGGIDGEDLYFFT 75

Query: 71  KLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFATKTDNTIIGYCKRFSSEPQSL 130
           KLKRST NSG LS HINRK+GL NGTWSGENSASPI+  K    IIGY KRF  E +SL
Sbjct: 76  KLKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNKDHEQIIGYRKRFRYENESL 134

BLAST of CmaCh19G001890 vs. TrEMBL
Match: A0A0A0LFJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G838730 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.8e-44
Identity = 86/118 (72.88%), Postives = 95/118 (80.51%), Query Frame = 1

Query: 11  VGVRFKPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGIDGEHLYFFT 70
           VGV+F+PTD QLL YLH KI+GQPYF+ AV D DLYG +EPWEIW  FGGIDGE LYFFT
Sbjct: 16  VGVKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWQSFGGIDGEDLYFFT 75

Query: 71  KLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFATKTDNTIIGYCKRFSSEPQS 129
           KLKRST NSG LS HINRK+GL NGTWSGENSASPI+  + D  IIGY KRF  E +S
Sbjct: 76  KLKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNEDDQQIIGYRKRFRYENES 133

BLAST of CmaCh19G001890 vs. TrEMBL
Match: A0A0A0M0I5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652300 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 9.2e-43
Identity = 83/119 (69.75%), Postives = 94/119 (78.99%), Query Frame = 1

Query: 11  VGVRFKPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGIDGEHLYFFT 70
           VG++F+PTD QLL YLH KI+GQPYF+ AV D DLYG +EPWEIW  FGGIDGE LYFFT
Sbjct: 46  VGLKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWQSFGGIDGEDLYFFT 105

Query: 71  KLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFATKTDNTIIGYCKRFSSEPQSL 130
           KLKRST N G LS H+NRK+GL NGTWSGENSASPI+  +    IIGY KRF  E +SL
Sbjct: 106 KLKRSTTNCGNLSTHVNRKIGLVNGTWSGENSASPIYVNENCEEIIGYRKRFRYENESL 164

BLAST of CmaCh19G001890 vs. TrEMBL
Match: A0A0U3J8Z8_PRUPE (NAC68 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 53/127 (41.73%), Postives = 76/127 (59.84%), Query Frame = 1

Query: 9   LPVGVRFKPTDPQLL-QYLHWKIHGQPY-FKRAVLDCDLYGEMEPWEIWLRFGG---IDG 68
           LPVG +F+P D QLL  YL  K+ G  + +   + + DLYG++EPW+IW  +GG      
Sbjct: 10  LPVGFKFRPRDDQLLGYYLLNKVRGTSFMYDNVIPEMDLYGKIEPWDIWHEYGGRNLAKS 69

Query: 69  EHLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFATKTDNTIIGYCKRFS 128
           E LYFFTKLK  ++   R++    R +G  +GTW GENS +P+   K +   +G  KRF 
Sbjct: 70  EDLYFFTKLKSLSDKDSRVA----RTIG--SGTWKGENSGTPVSDPKNEENDLGIWKRFH 129

Query: 129 SE-PQSL 130
            E P+S+
Sbjct: 130 YENPKSV 130

BLAST of CmaCh19G001890 vs. TrEMBL
Match: M5X6G9_PRUPE (NAC68 OS=Prunus persica GN=PRUPE_ppa023804mg PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 53/127 (41.73%), Postives = 76/127 (59.84%), Query Frame = 1

Query: 9   LPVGVRFKPTDPQLL-QYLHWKIHGQPY-FKRAVLDCDLYGEMEPWEIWLRFGG---IDG 68
           LPVG +F+P D QLL  YL  K+ G  + +   + + DLYG++EPW+IW  +GG      
Sbjct: 10  LPVGFKFRPRDDQLLGYYLLNKVRGTSFMYDNVIPEMDLYGKIEPWDIWHEYGGRNLAKS 69

Query: 69  EHLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFATKTDNTIIGYCKRFS 128
           E LYFFTKLK  ++   R++    R +G  +GTW GENS +P+   K +   +G  KRF 
Sbjct: 70  EDLYFFTKLKSLSDKDSRVA----RTIG--SGTWKGENSGTPVSDPKNEENDLGIWKRFH 129

Query: 129 SE-PQSL 130
            E P+S+
Sbjct: 130 YENPKSV 130

BLAST of CmaCh19G001890 vs. NCBI nr
Match: gi|449448878|ref|XP_004142192.1| (PREDICTED: NAC transcription factor 29-like [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 3.2e-44
Identity = 87/119 (73.11%), Postives = 95/119 (79.83%), Query Frame = 1

Query: 11  VGVRFKPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGIDGEHLYFFT 70
           VGV+F+PTD QLL YLH KI+GQPYF+ AV D DLYG +EPWEIW  FGGIDGE LYFFT
Sbjct: 16  VGVKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWQSFGGIDGEDLYFFT 75

Query: 71  KLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFATKTDNTIIGYCKRFSSEPQSL 130
           KLKRST NSG LS HINRK+GL NGTWSGENSASPI+  K    IIGY KRF  E +SL
Sbjct: 76  KLKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNKDHEQIIGYRKRFRYENESL 134

BLAST of CmaCh19G001890 vs. NCBI nr
Match: gi|778688961|ref|XP_011652873.1| (PREDICTED: NAC domain-containing protein 102-like [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 5.4e-44
Identity = 86/118 (72.88%), Postives = 95/118 (80.51%), Query Frame = 1

Query: 11  VGVRFKPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGIDGEHLYFFT 70
           VGV+F+PTD QLL YLH KI+GQPYF+ AV D DLYG +EPWEIW  FGGIDGE LYFFT
Sbjct: 16  VGVKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWQSFGGIDGEDLYFFT 75

Query: 71  KLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFATKTDNTIIGYCKRFSSEPQS 129
           KLKRST NSG LS HINRK+GL NGTWSGENSASPI+  + D  IIGY KRF  E +S
Sbjct: 76  KLKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNEDDQQIIGYRKRFRYENES 133

BLAST of CmaCh19G001890 vs. NCBI nr
Match: gi|449442783|ref|XP_004139160.1| (PREDICTED: NAC domain-containing protein 66-like [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 1.3e-42
Identity = 83/119 (69.75%), Postives = 94/119 (78.99%), Query Frame = 1

Query: 11  VGVRFKPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGIDGEHLYFFT 70
           VG++F+PTD QLL YLH KI+GQPYF+ AV D DLYG +EPWEIW  FGGIDGE LYFFT
Sbjct: 20  VGLKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWQSFGGIDGEDLYFFT 79

Query: 71  KLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFATKTDNTIIGYCKRFSSEPQSL 130
           KLKRST N G LS H+NRK+GL NGTWSGENSASPI+  +    IIGY KRF  E +SL
Sbjct: 80  KLKRSTTNCGNLSTHVNRKIGLVNGTWSGENSASPIYVNENCEEIIGYRKRFRYENESL 138

BLAST of CmaCh19G001890 vs. NCBI nr
Match: gi|700211551|gb|KGN66647.1| (hypothetical protein Csa_1G652300 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 1.3e-42
Identity = 83/119 (69.75%), Postives = 94/119 (78.99%), Query Frame = 1

Query: 11  VGVRFKPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGIDGEHLYFFT 70
           VG++F+PTD QLL YLH KI+GQPYF+ AV D DLYG +EPWEIW  FGGIDGE LYFFT
Sbjct: 46  VGLKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWQSFGGIDGEDLYFFT 105

Query: 71  KLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFATKTDNTIIGYCKRFSSEPQSL 130
           KLKRST N G LS H+NRK+GL NGTWSGENSASPI+  +    IIGY KRF  E +SL
Sbjct: 106 KLKRSTTNCGNLSTHVNRKIGLVNGTWSGENSASPIYVNENCEEIIGYRKRFRYENESL 164

BLAST of CmaCh19G001890 vs. NCBI nr
Match: gi|659131362|ref|XP_008465646.1| (PREDICTED: NAC domain-containing protein 72-like [Cucumis melo])

HSP 1 Score: 178.7 bits (452), Expect = 8.6e-42
Identity = 83/115 (72.17%), Postives = 94/115 (81.74%), Query Frame = 1

Query: 11  VGVRFKPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGIDGEHLYFFT 70
           VGV+F+PTD QLL YL+ KI+GQPYF+ A+ D DLYG  EPWEIW  F GIDGE LYFFT
Sbjct: 16  VGVKFRPTDQQLLHYLYCKINGQPYFQGAIFDFDLYGGTEPWEIWQSFKGIDGEDLYFFT 75

Query: 71  KLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFATKTDNTIIGYCKRFSSE 126
           KLKRST N G+LSAHI+RK+GLANGTWSGENSA+PIFA + D  IIGY KRF  E
Sbjct: 76  KLKRSTKNCGQLSAHISRKIGLANGTWSGENSATPIFANEDDEQIIGYRKRFRYE 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KXM1_CUCSA2.2e-4473.11Uncharacterized protein OS=Cucumis sativus GN=Csa_4G296900 PE=4 SV=1[more]
A0A0A0LFJ5_CUCSA3.8e-4472.88Uncharacterized protein OS=Cucumis sativus GN=Csa_3G838730 PE=4 SV=1[more]
A0A0A0M0I5_CUCSA9.2e-4369.75Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652300 PE=4 SV=1[more]
A0A0U3J8Z8_PRUPE1.5e-1641.73NAC68 OS=Prunus persica PE=2 SV=1[more]
M5X6G9_PRUPE1.5e-1641.73NAC68 OS=Prunus persica GN=PRUPE_ppa023804mg PE=2 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|449448878|ref|XP_004142192.1|3.2e-4473.11PREDICTED: NAC transcription factor 29-like [Cucumis sativus][more]
gi|778688961|ref|XP_011652873.1|5.4e-4472.88PREDICTED: NAC domain-containing protein 102-like [Cucumis sativus][more]
gi|449442783|ref|XP_004139160.1|1.3e-4269.75PREDICTED: NAC domain-containing protein 66-like [Cucumis sativus][more]
gi|700211551|gb|KGN66647.1|1.3e-4269.75hypothetical protein Csa_1G652300 [Cucumis sativus][more]
gi|659131362|ref|XP_008465646.1|8.6e-4272.17PREDICTED: NAC domain-containing protein 72-like [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003441NAC-dom
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G001890.1CmaCh19G001890.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003441NAC domainPFAMPF02365NAMcoord: 10..122
score: 1.
IPR003441NAC domainPROFILEPS51005NACcoord: 9..172
score: 10
IPR003441NAC domainunknownSSF101941NAC domaincoord: 5..123
score: 9.29
NoneNo IPR availablePANTHERPTHR31719FAMILY NOT NAMEDcoord: 9..123
score: 1.4
NoneNo IPR availablePANTHERPTHR31719:SF10SUBFAMILY NOT NAMEDcoord: 9..123
score: 1.4