CmaCh19G001560 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACTTTATGACATCGCATGAAGTTTGTCAACATAATATGTCTACGTGTGTCCATCGCTATCTTCGACCCATATTTGCCAAATGGATTCAATCTCTTCATGGTAAAACATCATATGGGTTCGATGTACTTTTATCTTCAACAAGGATTCAATCTGTTCATGGTAAAACATCATATGGGTTCGATGTACTTTTATCCTCAACAAGCGGCCCAGCCACCACTGCTACACATAAATTAGGAACAGTCATCAACCTCAAACACATGGCTCGGTATGCGACTATCTACTCAATGACAACCTAAGCTTAAAAAACTATCGAAGTTGTTCCAAGTTAACCGCGTTGGTATTGCCCACTTTGTTGGATCTGATAGTCTGCAGAGATAAAAACCTTTCTCAATCACAATCTATCGAAGAGATAGAACTTATGAAATACTATTTATCAGAATTCCCAATTGTGTCGGTGGATATGGAGTTTTAAGGTAAAAATTAAACTTGAAGGTGGCTAGGAGGGGTGAATTTTTTAGTTTTTATTTACTCAATTTTGTATATATATGAATTCTATAAATGCCTCCAATTTAACGTGAATCGACTCAGCATTCTCGAGTTAGGACTCACACTTACCAATGAGAATGAAAAATAGGAAGGACGTAAAAGTTTAATTTTCAAGATTTTGATAAAATTAGTAATATCGAAGGTGTTTATTCACTCGATCCATTAAAAAAAAGAAGGGATTTAATTTCAATAGATTGAGGAGTTATCTCCCCAATAATTTGGTAGAAAGGGTAGAATACGGAGATGAATAACATTTCATGGATGGTATGACATCACCTATTTAATGAAGTTTACAAACATAATAATGTGCATGCCTACGTCCATGTCTATCTTCGCCACCACTGCTACACATCTATTAGGAACAGTCACCGACCTCAAACATATTGCTCGGTACTCCGACTACCTACTTAATGACAACCTAGGCTTAAAAAATCTATTAGGAACAGTCACTGACCTCAAACATATTGCTCGGTACTCCGACTACCTGCTCAATGACAACCTAGGCTTAAAAAAACTAGCGAAGCTGCTCCAAGTTAATAGCATTGGTACTGCCCACTTTACTGGGTCTGACAGTTTGCTTGCCCCATCAGTTTATGTCAAGATGAAGGTAATTCTCAAGGTTGAACCAGAGATATACTAA ATGGACTTTATGACATCGCATGAAGTTTGTCAACATAATATGTCTACGTGTGTCCATCGCTATCTTCGACCCATATTTGCCAAATGGATTCAATCTCTTCATGGTAAAACATCATATGGGTTCGATGTACTTTTATCTTCAACAAGGATTCAATCTGTTCATGGAACAGTCACTGACCTCAAACATATTGCTCGGTACTCCGACTACCTGCTCAATGACAACCTAGGCTTAAAAAAACTAGCGAAGCTGCTCCAAGTTAATAGCATTGGTACTGCCCACTTTACTGGGTCTGACAGTTTGCTTGCCCCATCAGTTTATGTCAAGATGAAGGTAATTCTCAAGGTTGAACCAGAGATATACTAA ATGGACTTTATGACATCGCATGAAGTTTGTCAACATAATATGTCTACGTGTGTCCATCGCTATCTTCGACCCATATTTGCCAAATGGATTCAATCTCTTCATGGTAAAACATCATATGGGTTCGATGTACTTTTATCTTCAACAAGGATTCAATCTGTTCATGGAACAGTCACTGACCTCAAACATATTGCTCGGTACTCCGACTACCTGCTCAATGACAACCTAGGCTTAAAAAAACTAGCGAAGCTGCTCCAAGTTAATAGCATTGGTACTGCCCACTTTACTGGGTCTGACAGTTTGCTTGCCCCATCAGTTTATGTCAAGATGAAGGTAATTCTCAAGGTTGAACCAGAGATATACTAA MDFMTSHEVCQHNMSTCVHRYLRPIFAKWIQSLHGKTSYGFDVLLSSTRIQSVHGTVTDLKHIARYSDYLLNDNLGLKKLAKLLQVNSIGTAHFTGSDSLLAPSVYVKMKVILKVEPEIY
BLAST of CmaCh19G001560 vs. Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 6.3e-07 Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 1
BLAST of CmaCh19G001560 vs. Swiss-Prot
Match: PSAB_CUSSA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cuscuta sandwichiana GN=psaB PE=3 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 1.4e-06 Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 1
BLAST of CmaCh19G001560 vs. Swiss-Prot
Match: PSAB_DRANE (Photosystem I P700 chlorophyll a apoprotein A2 OS=Draba nemorosa GN=psaB PE=3 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 1.8e-06 Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 1
BLAST of CmaCh19G001560 vs. Swiss-Prot
Match: PSAB_SOLBU (Photosystem I P700 chlorophyll a apoprotein A2 OS=Solanum bulbocastanum GN=psaB PE=3 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 1.8e-06 Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 1
BLAST of CmaCh19G001560 vs. Swiss-Prot
Match: PSAB_DRIGR (Photosystem I P700 chlorophyll a apoprotein A2 OS=Drimys granadensis GN=psaB PE=3 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 1.8e-06 Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 1
BLAST of CmaCh19G001560 vs. TrEMBL
Match: A0A067JP74_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00587 PE=4 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.7e-06 Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 1
BLAST of CmaCh19G001560 vs. TrEMBL
Match: A0A067L295_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24370 PE=4 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.7e-06 Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 1
BLAST of CmaCh19G001560 vs. TrEMBL
Match: B9IKL9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s00911g PE=4 SV=2) HSP 1 Score: 60.5 bits (145), Expect = 1.7e-06 Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 1
BLAST of CmaCh19G001560 vs. TrEMBL
Match: V4S8J5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013857mg PE=4 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.7e-06 Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1
BLAST of CmaCh19G001560 vs. TrEMBL
Match: B9IKP5_POPTR (CCR4-NOT transcription complex family protein (Fragment) OS=Populus trichocarpa GN=POPTR_0018s00650g PE=4 SV=2) HSP 1 Score: 60.1 bits (144), Expect = 2.2e-06 Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 1
BLAST of CmaCh19G001560 vs. TAIR10
Match: AT1G06450.1 (AT1G06450.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein) HSP 1 Score: 55.1 bits (131), Expect = 3.5e-08 Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 1
BLAST of CmaCh19G001560 vs. TAIR10
Match: ATCG00340.1 (ATCG00340.1 Photosystem I, PsaA/PsaB protein) HSP 1 Score: 53.5 bits (127), Expect = 1.0e-07 Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 1
BLAST of CmaCh19G001560 vs. NCBI nr
Match: gi|659108981|ref|XP_008454486.1| (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo]) HSP 1 Score: 63.5 bits (153), Expect = 2.8e-07 Identity = 48/117 (41.03%), Postives = 61/117 (52.14%), Query Frame = 1
BLAST of CmaCh19G001560 vs. NCBI nr
Match: gi|743842219|ref|XP_011026650.1| (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Populus euphratica]) HSP 1 Score: 62.0 bits (149), Expect = 8.2e-07 Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 1
BLAST of CmaCh19G001560 vs. NCBI nr
Match: gi|566213566|ref|XP_002324241.2| (hypothetical protein POPTR_0018s00911g [Populus trichocarpa]) HSP 1 Score: 60.5 bits (145), Expect = 2.4e-06 Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 1
BLAST of CmaCh19G001560 vs. NCBI nr
Match: gi|802778127|ref|XP_012091063.1| (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]) HSP 1 Score: 60.5 bits (145), Expect = 2.4e-06 Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 1
BLAST of CmaCh19G001560 vs. NCBI nr
Match: gi|643705183|gb|KDP21800.1| (hypothetical protein JCGZ_00587 [Jatropha curcas]) HSP 1 Score: 60.5 bits (145), Expect = 2.4e-06 Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |