CmaCh19G001550 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G001550
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	CCR4-NOT transcription complex family protein
Location	Cma_Chr19 : 1020944 .. 1023062 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGATATCGCCTATTTCATGAAGTTTACCAACATAATGTGCATGCCTACGTCCATGTCTATCTTCGCCACCACTACTACACATCTATTAGGAACAGTCACCGACCTCAAACATATGGCTCGGTACTCCGACTACCTACTCAATGACAACCTAGGCTTAAAATACTGGCGAAGCTACTCTGGCATTGTTACTGCCCACTTTGCTGGATTTGACAGTTTGCTTACCGCATCAGTTTATGCCAAGATAAAGGTAATTCTCAAGGTTGAACGAAATATATACGAAGGCTTTTTATATGGATTACGATATCACATTCAAGTTAACCCACGGTCGTATCTCAACATATTAGATTTAAAAAGTGTGTCTTTCTTTGCAGAGGTACATATATATATATTTTAACTAAAAAATATTTAATTTAAACATTTTTTTTATTCTGAAAAATAATTAAAAGTTTAATCTTTATTACACTTTAACGTTTATTAATTTAATCTCTATTACACTTTTATCCTTCATTTTTTATTTTTTTTTGTTATTTTTTATTAATTTCTTTCCTTTAATGTGAATCGTCTTCCAATTATGATTCACACTCCTCATGAAAATAGAAAAATAGGGATTGACGTAGTAGTTTAACTTGAGAGATTTTGATCGAATTAGTATATGGAGCGTGTTTTTTCACTGAATTTAATTCTAAAAAATAAAAGATTTGATTTTAATAGACTAAGCAGCCGAGTCCAGTTTAGCCCGATCGTAATTGGTCGATGAATACAGATGGATAACATTTCATCGATTTTATGACATAGCCGATCTAATATTAGTCACAGTCACCAACCTCATACATGCCACCTGCCCAATTTGTCTACAAAGTTTTTTTTTAATTAAAAAATAATAATTTTTATTACACTTTCATCATTTATTTTTAATCAAACTAAAATTTAGTGTTTGTTGTTATTTTATGTCGTTGTTATTTTATTATTAATTTTTAAAAAACATTGGTAATCTATTTTCTTTTTTTAATTTAAGATAATCCTACTGCCATTTCTTTGAATTGATTTTTATAATATATAGTTTAACTTTTTCTCACTTTCCTACTCAATTCAATATTTTGATGGTAAAGTTAAGAAATTATCCGACAAACAATCAATAATCAGAACAAGTAATTGCTCGAAAGAAATGGTGAAAATTATTGGAGAAGGGGCAATATCTATAGTTTTAGAGTGTGGCCATGGATACCTACTTTCTGGTTAAAACTTAAATGTTTAGTATACCTATGTTTTTTTAGGATGTATTTTTTTTTAGTTTTGTTTTAATAGATCTATTTTTTTTAGGATTTTTAAGATCACCACAGAGGCATTTCAAACGAATAATTCTATGAATGACTATGATTTAATGTGAATTATCCTCCAATTAGGACTAACGCTCAACGATGAAAATGGAAAAATAGGTAAGACTTGTAGTTTAAATTCAGAGATTTTGATCAAATTAGCATATCGAAGGTGTTTCTCCACTGAATTCATTTATGAAAAATAAGAGATTTGATTTTAATAGACTCAAGTAGCACGTTTAGCCCATCCTAAATGGTCCAATAAGAATATTTCATGGATTTTATGACATATGTAATTGTCACCGACCTCTGACACGTACTCTTTCCAATTTGTCTTCAAATATATATTTTTTTAATTAAAATAAAATAATTTAATATTTATTACACTTCTATATTTATTTTCAATCAAACTAAAATTGAGTTTATTAATTTTTTTAAAAAGTTTGTAATAGATTTCCTTTTTAAATTTGAAAACATATTTATCTAATCTTACTCTCATTTCTATGAGCTGATTTTTATAATATATATTTTTACCTTTTCTCACTCTCATACTCAATTCAATATTTTGACGTGAAGTTAAAAAAATATGAGATAGAAGTTATGAACGAGTATTATCAGAGTTACCAATTAGAGTTCCCAATTGTGGGATACCGGGTTTTTAGGTAAAAATTAAAGTTGGTGGTGAGGAGTCTTATTTTTTTAGTTTTGTTTGACTAAGGTATCTTTATTTAGGATTGTAAGATGAACTTCAAGTGGTTTCAAACGAAAAATTCTATTAATGATTTTGATTTAATGTGA

mRNA sequence

ATGTATGATATCGCCTATTTCATGAAGTTTACCAACATAATGTGCATGCCTACGTCCATGTCTATCTTCGCCACCACTACTACACATCTATTAGGAACAGTCACCGACCTCAAACATATGGCTCGGTACTCCGACTACCTACTCAATGACAACCTAGGCTTAAAATACTGGCGAAGCTACTCTGGCATTGTTACTGCCCACTTTGCTGGATTTGACAGTTTGCTTACCGCATCAGTTTATGCCAAGATAAAGGTAATTCTCAAGGTTGAACGAAATATATACGAAGGCTTTTTATATGGATTACGATATCACATTCAAGTTAACCCACGGTCGTATCTCAACATATTAGATTTAAAAAGTGTGTCTTTCTTTGCAGAGGATTGTAAGATGAACTTCAAGTGGTTTCAAACGAAAAATTCTATTAATGATTTTGATTTAATGTGA

Coding sequence (CDS)

ATGTATGATATCGCCTATTTCATGAAGTTTACCAACATAATGTGCATGCCTACGTCCATGTCTATCTTCGCCACCACTACTACACATCTATTAGGAACAGTCACCGACCTCAAACATATGGCTCGGTACTCCGACTACCTACTCAATGACAACCTAGGCTTAAAATACTGGCGAAGCTACTCTGGCATTGTTACTGCCCACTTTGCTGGATTTGACAGTTTGCTTACCGCATCAGTTTATGCCAAGATAAAGGTAATTCTCAAGGTTGAACGAAATATATACGAAGGCTTTTTATATGGATTACGATATCACATTCAAGTTAACCCACGGTCGTATCTCAACATATTAGATTTAAAAAGTGTGTCTTTCTTTGCAGAGGATTGTAAGATGAACTTCAAGTGGTTTCAAACGAAAAATTCTATTAATGATTTTGATTTAATGTGA

Protein sequence

MYDIAYFMKFTNIMCMPTSMSIFATTTTHLLGTVTDLKHMARYSDYLLNDNLGLKYWRSYSGIVTAHFAGFDSLLTASVYAKIKVILKVERNIYEGFLYGLRYHIQVNPRSYLNILDLKSVSFFAEDCKMNFKWFQTKNSINDFDLM

Homology

[Close]

BLAST of CmaCh19G001550 vs. TrEMBL
Match: V4S8J5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013857mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.1e-07
Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = 1


Query: 1   MYDIAYFMKFTNIMCMPTSMSIFATTTTHLLGTVTDLKHMARYSDYLLNDNLGLKYWRSY 60
           +YD+A+  K      +P S   FA   T    +V D+K +A+Y D L+  NLGL      
Sbjct: 145 LYDLAHITKLFINHPLPQSARAFAVGATKYFESVLDVKVVAKYCDGLMGGNLGLSKLAKI 204

Query: 61  SGIVT---AHFAGFDSLLTASVYAKIKVILKVERNIYEGFLYGL 102
            G+     AH AG DS +TA+V+AK+K   + E  +++G LYG+
Sbjct: 205 LGVERLGEAHNAGSDSFVTAAVFAKMKEKFEFEEKVFDGILYGM 248

[Close]

BLAST of CmaCh19G001550 vs. TrEMBL
Match: V4TLB7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016106mg PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-06
Identity = 38/112 (33.93%), Postives = 58/112 (51.79%), Query Frame = 1


Query: 1   MYDIAYFMKFTNIMCMPTSMSIFATTTTHLLGTVTDLKHMARYSDYLLNDNLGLKYWRSY 60
           +YD+AY +K      +P +   F+        +V D+K +A Y   L    LGL      
Sbjct: 150 LYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARI 209

Query: 61  SGIVT---AHFAGFDSLLTASVYAKIKVILKVERNIYEGFLYGLRYHIQVNP 110
             +     AH AG DSLLTA+V+A++K   ++E + ++GFLYGL   I+  P
Sbjct: 210 LNVKRHGGAHHAGSDSLLTAAVFAEMKNRYELEESAFDGFLYGLDSRIESKP 261

[Close]

BLAST of CmaCh19G001550 vs. NCBI nr
Match: gi|659108981|ref|XP_008454486.1| (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 5.5e-13
Identity = 50/107 (46.73%), Postives = 59/107 (55.14%), Query Frame = 1


Query: 1   MYDIAYFMKFTNIMCMPTSMSIFATTTTHLLGTVTDLKHMARYSDYLLNDNLGLKYWRSY 60
           +YD+AY +K   I  MP SM  FA      LGTV DLKHM R  +YL+N  LGLK     
Sbjct: 147 IYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTVNDLKHMIRNCEYLMNGELGLKRLAEL 206

Query: 61  SGIVTAHF-AGFDSLLTASVYAKIKVILKVERNIYEGFLYGLRYHIQ 107
             +    F  G DSLL A  YAK+K  LK    I +GFLYG  Y I+
Sbjct: 207 LNVNDTIFNGGSDSLLIALAYAKMKKTLKFSSEITDGFLYGFYYRIR 253

[Close]

BLAST of CmaCh19G001550 vs. NCBI nr
Match: gi|657999824|ref|XP_008392346.1| (PREDICTED: putative CCR4-associated factor 1 homolog 8 isoform X1 [Malus domestica])

HSP 1 Score: 66.6 bits (161), Expect = 4.1e-08
Identity = 41/104 (39.42%), Postives = 57/104 (54.81%), Query Frame = 1


Query: 1   MYDIAYFMKFTNIMCMPTSMSIFATTTTHLLGTVTDLKHMARYSDYLLNDNLGLKYWRSY 60
           +YD AY MKF     MP+S + FA    +L   V DLK MA++   LL   +GL+     
Sbjct: 148 LYDSAYVMKFMTRKAMPSSPTEFAAMAGNLFERVCDLKFMAKFYQGLLGGEIGLERMAKI 207

Query: 61  SGIV---TAHFAGFDSLLTASVYAKIKVILKVERNIYEGFLYGL 102
             +     AH AG DSLLTA  + +++    ++  +YEGFLYGL
Sbjct: 208 LRVQRYGDAHQAGSDSLLTADAFVRMRAQFVLKPGMYEGFLYGL 251

[Close]

BLAST of CmaCh19G001550 vs. NCBI nr
Match: gi|659133291|ref|XP_008466654.1| (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-07
Identity = 40/89 (44.94%), Postives = 49/89 (55.06%), Query Frame = 1


Query: 1   MYDIAYFMKFTNIMCMPTSMSIFATTTTHLLGTVTDLKHMARYSDYLLNDNLGLKYWRSY 60
           +YD+AY +K   I  MP SM  FAT     LGTV DLKHM    ++L+N  LGLK     
Sbjct: 147 IYDVAYLLKLMMIRTMPESMVEFATIAQRQLGTVNDLKHMICNCEHLMNGELGLKRLAEL 206

Query: 61  SGIVTAHF-AGFDSLLTASVYAKIKVILK 89
             +    F  G DSLL A  Y K+K +LK
Sbjct: 207 LNVNDTIFNGGSDSLLIALAYVKMKKMLK 235

[Close]

BLAST of CmaCh19G001550 vs. NCBI nr
Match: gi|567876007|ref|XP_006430593.1| (hypothetical protein CICLE_v10013857mg [Citrus clementina])

HSP 1 Score: 63.2 bits (152), Expect = 4.5e-07
Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = 1


Query: 1   MYDIAYFMKFTNIMCMPTSMSIFATTTTHLLGTVTDLKHMARYSDYLLNDNLGLKYWRSY 60
           +YD+A+  K      +P S   FA   T    +V D+K +A+Y D L+  NLGL      
Sbjct: 145 LYDLAHITKLFINHPLPQSARAFAVGATKYFESVLDVKVVAKYCDGLMGGNLGLSKLAKI 204

Query: 61  SGIVT---AHFAGFDSLLTASVYAKIKVILKVERNIYEGFLYGL 102
            G+     AH AG DS +TA+V+AK+K   + E  +++G LYG+
Sbjct: 205 LGVERLGEAHNAGSDSFVTAAVFAKMKEKFEFEEKVFDGILYGM 248

[Close]

BLAST of CmaCh19G001550 vs. NCBI nr
Match: gi|694446748|ref|XP_009349658.1| (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Pyrus x bretschneideri])

HSP 1 Score: 62.4 bits (150), Expect = 7.7e-07
Identity = 39/104 (37.50%), Postives = 55/104 (52.88%), Query Frame = 1


Query: 1   MYDIAYFMKFTNIMCMPTSMSIFATTTTHLLGTVTDLKHMARYSDYLLNDNLGLKYWRSY 60
           +YD AY MK      MP+S + FA    +L   V DLK MA++   LL   +GL+     
Sbjct: 148 LYDSAYVMKLMTRKAMPSSPTEFAAMAGNLFERVCDLKFMAKFYQGLLGGEIGLERMAKI 207

Query: 61  SGIV---TAHFAGFDSLLTASVYAKIKVILKVERNIYEGFLYGL 102
             +     AH AG DS +TA  + K++    ++  +YEGFLYGL
Sbjct: 208 LRVQRYGDAHQAGSDSFVTADAFMKMRAQFGLKPGMYEGFLYGL 251

The following BLAST results are available for this feature:

BLAST of CmaCh19G001550 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh19G001550 vs. TrEMBL


Match Name	E-value	Identity	Description
V4S8J5_9ROSI	3.1e-07	36.54	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013857mg PE=4 SV=1	[more]
V4TLB7_9ROSI	4.5e-06	33.93	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016106mg PE=4 SV=1	[more]

BLAST of CmaCh19G001550 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh19G001550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108981\|ref\|XP_008454486.1\|	5.5e-13	46.73	PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo]	[more]
gi\|657999824\|ref\|XP_008392346.1\|	4.1e-08	39.42	PREDICTED: putative CCR4-associated factor 1 homolog 8 isoform X1 [Malus domesti...	[more]
gi\|659133291\|ref\|XP_008466654.1\|	2.0e-07	44.94	PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo]	[more]
gi\|567876007\|ref\|XP_006430593.1\|	4.5e-07	36.54	hypothetical protein CICLE_v10013857mg [Citrus clementina]	[more]
gi\|694446748\|ref\|XP_009349658.1\|	7.7e-07	37.50	PREDICTED: putative CCR4-associated factor 1 homolog 8 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G001550.1	CmaCh19G001550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 2..101 score: 1.
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 1..100 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G001550	Melon (DHL92) v3.6.1	cmamedB559
CmaCh19G001550	Silver-seed gourd	carcmaB1082
CmaCh19G001550	Silver-seed gourd	carcmaB1322
CmaCh19G001550	Cucumber (Chinese Long) v3	cmacucB0614
CmaCh19G001550	Cucumber (Chinese Long) v3	cmacucB0624
CmaCh19G001550	Watermelon (97103) v2	cmawmbB537
CmaCh19G001550	Watermelon (97103) v2	cmawmbB539
CmaCh19G001550	Watermelon (97103) v2	cmawmbB540
CmaCh19G001550	Wax gourd	cmawgoB0637
CmaCh19G001550	Wax gourd	cmawgoB0653
CmaCh19G001550	Cucurbita maxima (Rimu)	cmacmaB259
CmaCh19G001550	Cucurbita maxima (Rimu)	cmacmaB362
CmaCh19G001550	Cucurbita maxima (Rimu)	cmacmaB450
CmaCh19G001550	Cucurbita maxima (Rimu)	cmacmaB460
CmaCh19G001550	Cucurbita maxima (Rimu)	cmacmaB466
CmaCh19G001550	Cucumber (Gy14) v1	cgycmaB0140
CmaCh19G001550	Cucurbita moschata (Rifu)	cmacmoB501
CmaCh19G001550	Cucurbita moschata (Rifu)	cmacmoB505
CmaCh19G001550	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G001550	Cucurbita moschata (Rifu)	cmacmoB523
CmaCh19G001550	Wild cucumber (PI 183967)	cmacpiB516
CmaCh19G001550	Cucumber (Chinese Long) v2	cmacuB509
CmaCh19G001550	Cucumber (Chinese Long) v2	cmacuB531
CmaCh19G001550	Melon (DHL92) v3.5.1	cmameB470
CmaCh19G001550	Watermelon (Charleston Gray)	cmawcgB451
CmaCh19G001550	Watermelon (Charleston Gray)	cmawcgB467
CmaCh19G001550	Watermelon (97103) v1	cmawmB492
CmaCh19G001550	Cucurbita pepo (Zucchini)	cmacpeB519
CmaCh19G001550	Cucurbita pepo (Zucchini)	cmacpeB522
CmaCh19G001550	Cucurbita pepo (Zucchini)	cmacpeB529
CmaCh19G001550	Cucurbita pepo (Zucchini)	cmacpeB543
CmaCh19G001550	Cucurbita pepo (Zucchini)	cmacpeB554
CmaCh19G001550	Bottle gourd (USVL1VR-Ls)	cmalsiB465
CmaCh19G001550	Bottle gourd (USVL1VR-Ls)	cmalsiB480
CmaCh19G001550	Bottle gourd (USVL1VR-Ls)	cmalsiB486
CmaCh19G001550	Bottle gourd (USVL1VR-Ls)	cmalsiB487
CmaCh19G001550	Cucumber (Gy14) v2	cgybcmaB375
CmaCh19G001550	Cucumber (Gy14) v2	cgybcmaB384
CmaCh19G001550	Cucumber (Gy14) v2	cgybcmaB948