CmaCh19G001530 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G001530
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPolynucleotidyl transferase, ribonuclease H-like superfamily protein
LocationCma_Chr19 : 1009431 .. 1011267 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTTCAAGGTAAAAATTAAACTTTAAGGTGACGAGAAGGGGTGATTTTTTTGGTTTTGTTTTACGGATTTTTGGATATATTATTTTAGGATTTTTAAGATAGACTACCAAAGGTGTTTGAGAGTTAGAATTCTATGAATGCCTCCAATTTAACGTGAATCGATTGAGCATTCTCAAGTTAGGACTAACACCTACCAATGAGAATGGAAAAATAGAAAGGACGTGGGAGTTTAATTTTCAAGATTTTGATAAAATGAGTAATATGGAGGTGTTTATTTACTTGATTCATTTATGCAAAAGAAGGAATTTAATTTCAATAGATTGAGTAGCTATGGAATTGCTCCCGAAGAATTTGGTAGATGTGGTAGAATACAGATGGATAACATTTCATGTATGGTATGACATCGCCTACTTAGTGAACTTTACCAACATAATATGCATGCCTACGTCCATGTCTATCTTCGCCACCACTGCTGCACATCTATTAGGAACAGTCACCGACCTCAAACATATGGCTCGGTATTCCGACTACCTACTCAATGGCAACCTAGGCTTAAAAAAAACTGGCGAAGCTGCTCCAAGTTAATGGCATTGGTAGTGCCCACTTTGTTGGGTCTGACAGTTCGCTTACCGCATCAGTTTATGCCAAGATGAAGGTAATTCTCAAGGTTGAACCAAAGATATACGAAGGCTTTTTATATGGATTACGATATCCCATTCAAGGTTATCGACGAACAGTTGTAATGGTAGATCCATCCAAGTTAACCTACAGTCATATCTCAAACATATTAGATTTAAAAACTGTATGCTTCATTTGCAGAGGTATATATATATATATATATATATTTAACTAATAATTATTTAATTTAAACCTTTTTCATTTTAAAAAATATTAAATGTTATGAATTGTCAAGAAAAAATTAAAAGTTTAATCTTATTACCTTATTAGTTTAATATTTTTATCATTTATTTTCAATCGAATGAATATATAATTTTTGTGGTTATTTTATTATTAATTTAGGTTTTCACATAAAACTTAGACGTTATTGTAAATGCCCTTTCATTTAATATAAATCATCCTCCAATTTGACTCACACTCCATCCATGAAAATGGAAAAATAGGGATGACTTGATAGTTTAAGAGAGATTTTGATCGAATTAGCATATAAAAGTGTTTCTTCACTGAATTCAATTGTGAAAAATGAGAGATTTGATTTTAATAGACTGAGCAGCCCAATCCAGTTTAGCCCGATTCTAAATGGTTGTTGAATACATATGAAAAACATTTCATCGATTTTATGACATAGCCTATCTAATATTAGGTACAGTCACAACCTCAAACATGCCACGCCCAATTTGTCTACAAAGATTTTTTTTTTAATTAAAAATAAAATTAATTTTTAATATAATTTTATCCTCTATTTTTAATCAAACTAAAATTTAGTATTGTTTTTTTTTGTTATTTTATTATCAACTTTTAAAAATAGTTTGTAACATATTTCCTTTTTAAATTTGAAAATATATTTATATAATCTTACTCCATTTGTTTGAGTTAGATTTTTATAATATATAGTTTTACTTCTTTTTACTTTCATATTCAATTCAATATAAATGATGAAAATTATTGGAGAAGAGGTGATAGTTAGAGGTCAATGAAAGCGTGATGTTTGGTCTCACGTATCAAATAGAATTTATGGAGTAGTATTTAGAGTTTTCGATTGTTGCCATAGATACCTAGTTTCTAGGTAAAACTTAAATGTTAAATTGGTTTTTTGAGTGTATGGATGTATTTTTTTAGTTTTGTTTTACTATATTTTTTTTTAGGATTTTTAA

mRNA sequence

ATGAAGTTTCAAGAATTCTATGAATGCCTCCAATTTAACGTGAATCGATTGAGCATTCTCAAGTTAGGACTAACACCTACCAATGAGAATGGAAAAATAGAAAGGACGTGGGAGTTTAATTTTCAAGATTTTGATAAAATGAGTAATATGGAGAAGGAATTTAATTTCAATAGATTGAGTAGCTATGGAATTGCTCCCGAAGAATTTGGTAGATGTGGTAGAATACAGATGGATAACATTTCATGTATGTCACCGACCTCAAACATATGGCTCGTTAATGGCATTGGTAGTGCCCACTTTGTTGGGTCTGACAGTTCGCTTACCGCATCAGTTTATGCCAAGATGAAGGTAATTCTCAAGGTTGAACCAAAGATATACGAAGGCTTTTTATATGGATTACGATATCCCATTCAAGGTTATCGACGAACAGTTGTAATGGATTTTTAA

Coding sequence (CDS)

ATGAAGTTTCAAGAATTCTATGAATGCCTCCAATTTAACGTGAATCGATTGAGCATTCTCAAGTTAGGACTAACACCTACCAATGAGAATGGAAAAATAGAAAGGACGTGGGAGTTTAATTTTCAAGATTTTGATAAAATGAGTAATATGGAGAAGGAATTTAATTTCAATAGATTGAGTAGCTATGGAATTGCTCCCGAAGAATTTGGTAGATGTGGTAGAATACAGATGGATAACATTTCATGTATGTCACCGACCTCAAACATATGGCTCGTTAATGGCATTGGTAGTGCCCACTTTGTTGGGTCTGACAGTTCGCTTACCGCATCAGTTTATGCCAAGATGAAGGTAATTCTCAAGGTTGAACCAAAGATATACGAAGGCTTTTTATATGGATTACGATATCCCATTCAAGGTTATCGACGAACAGTTGTAATGGATTTTTAA

Protein sequence

MKFQEFYECLQFNVNRLSILKLGLTPTNENGKIERTWEFNFQDFDKMSNMEKEFNFNRLSSYGIAPEEFGRCGRIQMDNISCMSPTSNIWLVNGIGSAHFVGSDSSLTASVYAKMKVILKVEPKIYEGFLYGLRYPIQGYRRTVVMDF
Homology
[Close]
BLAST of CmaCh19G001530 vs. TrEMBL
Match: V4L5U8_EUTSA (Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10010955mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 39/130 (30.00%), Postives = 66/130 (50.77%), Query Frame = 1 

Query: 10  LQFNVNRLSILKLGLTPTNENGKIERTWEFNFQDFDKMSNMEKEFNFNRLSSYGIAPE-- 69
           ++F+VN+  +++LG T  +  G+I  TWE NF DF  + +   E + + L   G+  E  
Sbjct: 1   MRFSVNKTKLIQLGFTLFDSYGRIGGTWEINFSDFGDIDDARNEKSIDFLKRNGLDIEKI 60

Query: 70  ------------EFGRCGRIQMDNISCMSPTSNIWL----------VNGIGSAHFVGSDS 116
                       EFGR  +   +N++ ++   ++ +          V+ +G+AH  GSDS
Sbjct: 61  RAQKICIEGFFSEFGRILKQTKNNVTWVTFHGSLDIAYQSLAHELGVSCVGTAHHAGSDS 120

[Close]
BLAST of CmaCh19G001530 vs. TrEMBL
Match: M4E363_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.9e-06
Identity = 42/140 (30.00%), Postives = 66/140 (47.14%), Query Frame = 1 

Query: 7   YECLQFNVNRLSILKLGLTPTNENGKIERTWEFNFQDFDKMSNM--EKEFNFNR------ 66
           Y+ L+FNV R   ++LG T    +G I  TWE NF+DFD  ++   EK   F +      
Sbjct: 49  YKNLKFNVERTKPIQLGFTLFERDGSIGGTWEVNFKDFDARTDACNEKSIEFLKHPSHPI 108

Query: 67  ------------LSSYGIAPEEFGR--CGRIQMDNISCMSPTSNIWLVNGIGSAHFVGSD 125
                       +S+Y  A  E G+  CG +++ + +     ++   +  +G AH  GSD
Sbjct: 109 LQPGCISFLTVGISTYSSARMEEGKEGCGSVRLSSKTVR--IADDLHIKRVGDAHHAGSD 168

[Close]
BLAST of CmaCh19G001530 vs. NCBI nr
Match: gi|567189008|ref|XP_006404267.1| (hypothetical protein EUTSA_v10010955mg, partial [Eutrema salsugineum])

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-06
Identity = 39/130 (30.00%), Postives = 66/130 (50.77%), Query Frame = 1 

Query: 10  LQFNVNRLSILKLGLTPTNENGKIERTWEFNFQDFDKMSNMEKEFNFNRLSSYGIAPE-- 69
           ++F+VN+  +++LG T  +  G+I  TWE NF DF  + +   E + + L   G+  E  
Sbjct: 1   MRFSVNKTKLIQLGFTLFDSYGRIGGTWEINFSDFGDIDDARNEKSIDFLKRNGLDIEKI 60

Query: 70  ------------EFGRCGRIQMDNISCMSPTSNIWL----------VNGIGSAHFVGSDS 116
                       EFGR  +   +N++ ++   ++ +          V+ +G+AH  GSDS
Sbjct: 61  RAQKICIEGFFSEFGRILKQTKNNVTWVTFHGSLDIAYQSLAHELGVSCVGTAHHAGSDS 120

The following BLAST results are available for this feature:
BLAST of CmaCh19G001530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh19G001530 vs. TrEMBL
Match NameE-valueIdentityDescription
V4L5U8_EUTSA1.2e-0630.00Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10010955mg P... [more]
M4E363_BRARP5.9e-0630.00Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
BLAST of CmaCh19G001530 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh19G001530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|567189008|ref|XP_006404267.1|1.7e-0630.00hypothetical protein EUTSA_v10010955mg, partial [Eutrema salsugineum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G001530.1CmaCh19G001530.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 4..71
score: 1.
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 3..134
score: 3.11

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh19G001530CmoCh19G001760Cucurbita moschata (Rifu)cmacmoB508
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G001530Cucumber (Chinese Long) v3cmacucB0614
CmaCh19G001530Cucumber (Chinese Long) v3cmacucB0624
CmaCh19G001530Watermelon (97103) v2cmawmbB537
CmaCh19G001530Watermelon (97103) v2cmawmbB539
CmaCh19G001530Watermelon (97103) v2cmawmbB540
CmaCh19G001530Wax gourdcmawgoB0637
CmaCh19G001530Wax gourdcmawgoB0653
CmaCh19G001530Cucurbita maxima (Rimu)cmacmaB259
CmaCh19G001530Cucurbita maxima (Rimu)cmacmaB362
CmaCh19G001530Cucurbita maxima (Rimu)cmacmaB450
CmaCh19G001530Cucurbita maxima (Rimu)cmacmaB460
CmaCh19G001530Cucurbita maxima (Rimu)cmacmaB466
CmaCh19G001530Cucumber (Gy14) v1cgycmaB0140
CmaCh19G001530Cucurbita moschata (Rifu)cmacmoB501
CmaCh19G001530Cucurbita moschata (Rifu)cmacmoB505
CmaCh19G001530Cucurbita moschata (Rifu)cmacmoB523
CmaCh19G001530Wild cucumber (PI 183967)cmacpiB516
CmaCh19G001530Cucumber (Chinese Long) v2cmacuB509
CmaCh19G001530Cucumber (Chinese Long) v2cmacuB531
CmaCh19G001530Melon (DHL92) v3.5.1cmameB470
CmaCh19G001530Watermelon (Charleston Gray)cmawcgB451
CmaCh19G001530Watermelon (Charleston Gray)cmawcgB467
CmaCh19G001530Watermelon (97103) v1cmawmB492
CmaCh19G001530Cucurbita pepo (Zucchini)cmacpeB519
CmaCh19G001530Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G001530Cucurbita pepo (Zucchini)cmacpeB529
CmaCh19G001530Cucurbita pepo (Zucchini)cmacpeB543
CmaCh19G001530Cucurbita pepo (Zucchini)cmacpeB554
CmaCh19G001530Bottle gourd (USVL1VR-Ls)cmalsiB465
CmaCh19G001530Bottle gourd (USVL1VR-Ls)cmalsiB480
CmaCh19G001530Bottle gourd (USVL1VR-Ls)cmalsiB486
CmaCh19G001530Bottle gourd (USVL1VR-Ls)cmalsiB487
CmaCh19G001530Cucumber (Gy14) v2cgybcmaB375
CmaCh19G001530Cucumber (Gy14) v2cgybcmaB384
CmaCh19G001530Cucumber (Gy14) v2cgybcmaB948
CmaCh19G001530Melon (DHL92) v3.6.1cmamedB559
CmaCh19G001530Silver-seed gourdcarcmaB1082
CmaCh19G001530Silver-seed gourdcarcmaB1322