CmaCh19G000720 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G000720
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr19 : 411326 .. 411613 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATCCAATTCACTTTCCTTTTGGCCATTTTGGTTGTTCTTGCCAACGCTCATCACCTCCATAGTTGCAGAACCATGAAAGAGGATCCACAAAAATGGTCCATCCTTCTTCTTCAGCAGTCTCTTCAGAGAGCTCCGGTTCCTCCCTCTGCCAAAAATGGCGGCACAACTATTCCGGTACCTCTCGGGCAAAGAGCTTTCGTCGGAAAATCCACGCCCTCGCCGGCGCACAGCTACCATCATCAAGTTCCTGTTCCTTTTGGTGTGGCCATGAAGACGAACTAA

mRNA sequence

ATGAAGATCCAATTCACTTTCCTTTTGGCCATTTTGGTTGTTCTTGCCAACGCTCATCACCTCCATAGTTGCAGAACCATGAAAGAGGATCCACAAAAATGGTCCATCCTTCTTCTTCAGCAGTCTCTTCAGAGAGCTCCGGTTCCTCCCTCTGCCAAAAATGGCGGCACAACTATTCCGGTACCTCTCGGGCAAAGAGCTTTCGTCGGAAAATCCACGCCCTCGCCGGCGCACAGCTACCATCATCAAGTTCCTGTTCCTTTTGGTGTGGCCATGAAGACGAACTAA

Coding sequence (CDS)

ATGAAGATCCAATTCACTTTCCTTTTGGCCATTTTGGTTGTTCTTGCCAACGCTCATCACCTCCATAGTTGCAGAACCATGAAAGAGGATCCACAAAAATGGTCCATCCTTCTTCTTCAGCAGTCTCTTCAGAGAGCTCCGGTTCCTCCCTCTGCCAAAAATGGCGGCACAACTATTCCGGTACCTCTCGGGCAAAGAGCTTTCGTCGGAAAATCCACGCCCTCGCCGGCGCACAGCTACCATCATCAAGTTCCTGTTCCTTTTGGTGTGGCCATGAAGACGAACTAA

Protein sequence

MKIQFTFLLAILVVLANAHHLHSCRTMKEDPQKWSILLLQQSLQRAPVPPSAKNGGTTIPVPLGQRAFVGKSTPSPAHSYHHQVPVPFGVAMKTN
Homology
[Close]
BLAST of CmaCh19G000720 vs. TrEMBL
Match: A0A0A0LCY5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.9e-24
Identity = 59/82 (71.95%), Postives = 68/82 (82.93%), Query Frame = 1 

Query: 1  MKIQFTFLLAILVVLANAHHLHSCRTMKEDPQKWSI--LLLQQSLQRAPVPPSAKNGGTT 60
          MKIQF+FLLAILV+LAN HHL SCRT+K+D Q WSI   LLQQSLQR PVPPSAKNG T 
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPLGQRAFVGKSTPSPAHSY 81
          IPVP+GQRAF GK++ + A +Y
Sbjct: 61 IPVPVGQRAFAGKTSAALARNY 82

[Close]
BLAST of CmaCh19G000720 vs. NCBI nr
Match: gi|700202793|gb|KGN57926.1| (hypothetical protein Csa_3G393150 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 9.9e-24
Identity = 59/82 (71.95%), Postives = 68/82 (82.93%), Query Frame = 1 

Query: 1  MKIQFTFLLAILVVLANAHHLHSCRTMKEDPQKWSI--LLLQQSLQRAPVPPSAKNGGTT 60
          MKIQF+FLLAILV+LAN HHL SCRT+K+D Q WSI   LLQQSLQR PVPPSAKNG T 
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPLGQRAFVGKSTPSPAHSY 81
          IPVP+GQRAF GK++ + A +Y
Sbjct: 61 IPVPVGQRAFAGKTSAALARNY 82

The following BLAST results are available for this feature:
BLAST of CmaCh19G000720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh19G000720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCY5_CUCSA6.9e-2471.95Uncharacterized protein OS=Cucumis sativus GN=Csa_3G393150 PE=4 SV=1[more]
BLAST of CmaCh19G000720 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh19G000720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202793|gb|KGN57926.1|9.9e-2471.95hypothetical protein Csa_3G393150 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G000720.1CmaCh19G000720.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh19G000720ClCG07G000820Watermelon (Charleston Gray)cmawcgB467
CmaCh19G000720Cla97C07G129110Watermelon (97103) v2cmawmbB540
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G000720Melon (DHL92) v3.6.1cmamedB548
CmaCh19G000720Silver-seed gourdcarcmaB0327
CmaCh19G000720Silver-seed gourdcarcmaB1049
CmaCh19G000720Silver-seed gourdcarcmaB1082
CmaCh19G000720Silver-seed gourdcarcmaB1322
CmaCh19G000720Cucumber (Chinese Long) v3cmacucB0611
CmaCh19G000720Cucumber (Chinese Long) v3cmacucB0623
CmaCh19G000720Watermelon (97103) v2cmawmbB539
CmaCh19G000720Wax gourdcmawgoB0653
CmaCh19G000720Cucurbita maxima (Rimu)cmacmaB467
CmaCh19G000720Cucurbita maxima (Rimu)cmacmaB450
CmaCh19G000720Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G000720Cucurbita moschata (Rifu)cmacmoB523
CmaCh19G000720Cucurbita moschata (Rifu)cmacmoB537
CmaCh19G000720Wild cucumber (PI 183967)cmacpiB515
CmaCh19G000720Cucumber (Chinese Long) v2cmacuB508
CmaCh19G000720Watermelon (Charleston Gray)cmawcgB464
CmaCh19G000720Watermelon (Charleston Gray)cmawcgB466
CmaCh19G000720Watermelon (97103) v1cmawmB491
CmaCh19G000720Watermelon (97103) v1cmawmB507
CmaCh19G000720Cucurbita pepo (Zucchini)cmacpeB519
CmaCh19G000720Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G000720Cucurbita pepo (Zucchini)cmacpeB528
CmaCh19G000720Cucurbita pepo (Zucchini)cmacpeB543
CmaCh19G000720Cucurbita pepo (Zucchini)cmacpeB554
CmaCh19G000720Bottle gourd (USVL1VR-Ls)cmalsiB464
CmaCh19G000720Bottle gourd (USVL1VR-Ls)cmalsiB486
CmaCh19G000720Cucumber (Gy14) v2cgybcmaB214