CmaCh19G000300 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G000300
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Location	Cma_Chr19 : 174073 .. 176147 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCATTTCAATGGCGATTTTGAAGGCCTTAGCGTTCATCTCAGTTGCAGCAACTATCTTGAGGAGTTGTTCAGTTGAAGGGCAGATTCGTTCGCCTTGCACGGCCTCAATGATCAACAATTTCACCCCATGTTTCAATGTCATCACTGGAAGTAGCAGCAATGGTTCTTCACAAAAGGAAAGTTGCTGCACCACACTGAGTTCGCTGTCGGGGATAAGCATGGACTGTGTCTGCCTTTTACTTACTGCTAATGTGCCTGTTCCTCTGCCCATCAATGCGGCCCTTGCGCTCATTCTTCCAAGTTCTTGTAACATTACTAACTTGCCTGCACAATGCAAAGGTAACAACTCATCACACCCTTTTCAATGATTTTTAAGTGTTTTAAGGGTTGGAAAAGCCTGACCAAATGGTGTGTAGTCCAATCTCACCGCTAGATGTTGTTCACTTTTCATTTCGAGCTGTTACAAATGGTATCAGAGTCAGACACCGGATGATATGTCAACGAGGAGGCTGAGCCCTGAACGAGGAGGTGTGTCAACAAGGGGTGGATTGTGAGATCCCACATCAGTTGTGGAGGAGAACGAAATATTTTTTATAAGGGTGTGGAAACCTCTCCCTAGCAAACGCATCTTAAAAGTCTTGAGGGAAAACCCGAAGAGGACAATATTTACTAGCGGTGGGCTTGGGATGTTACAAATGATATCATAGCCATACATTAGGCGATGTGTCAGTGAGGACGTTAGGCCCCGAAGGGGGTGGATTGTGAGATCCCACATCGGTTGAAGATGAGAACAAAACATTCTTTACAAGAGTGTGGAAACCTCTCCCTCACAAACGCGTTTAAAAACTTTGAGGGAGGAAAAGCTCAAAGAGGACAATATTTCCTAACGATGGGCTTGAACGGTTAACAATTTCTTAGATTTTATGAGTTTTAACGTTGGTCTTGATCATATCTTGCAGCATCAGCTTCTCCCCTGCCATCACCAGGTATGATAATCTTCTCTAGTTCTCATCAAATTTCTTTTACATCACTAGATCAATGAAAACTCAGAGTAAGAGAGGGTTGAAAATTTGATTCTTCTGTAATTGACAGGACCTGTCTCACTTGGACCAGCTGCACCATCTCCTACTGCAGCTGCTTCTCCTCTAAGCCCACAAGGTAACCTCCATGTGCATGATTATCTAATCTTGTCATCAACATTAAGAATGAGCAGATTCACATCTATTCAATATAAAACGGTTAGGAATTATAATATTATTTCCTCGAACAAAGTACATTATAGAGCCTTTTTAGAGGCCTATGGAGCCCTTGAACAGCCTCCACTTAATCGAGGCTCGACTCCTTTTCTAGAGTACTTGAATAAAGTACACTCTTTGTTTGACACTTCAATCACTTTTAACTACACCTTCGAAGTTCACAACTTCTTTGTTCGATATTTAAGGATCCTATTGACATAGCAAAATTAAGGGCATGACTTTGATACCATATTCGAAATTACGGACCTCACAATGGTATGATATTGTCTTGAGCATAAGCTCTAATGGCTTTATTTTGGGCTTCTCCAAAATGTCTCATACCAATGAAGATATATTTCTTACCTATAAACTCAATACCATTGTGATCCTAAATTAGACTAACTCCCCATGGTGAGGAAAGTTCATTAGTACTTACAATTGATCTTTCATTTGTGTGGGCAGTTTCCAAAGCAGTAGCAGTAGCTCCGGCACCAGAAAGCAGCCAGCCTCAGCCGCAGAAATTGACACCGACGTATTCTCCGGCGGAATCGCAAGCTCCAGAAGCAGCCCACCGTCGGATCCGACCGGTTTTAGCTCCATCCGCATCTACTCCATCTTGTTCCCGCTCACCATCTCTCTTGCTGATTTCCATAGCCGTGATGGTCTTCAAATCCCATTGAACAGTTGTTTTGCTTTCGTTCCTCTACTAATTGAATGTGCTTGATGCACGTTTGTTTCCCTCTTTTCACTCTGCAAAAACGTTCAGAAATCGAAACTTCATTCCGATTTCGATGCCAGTTCTGATATATCTTTAATCAAATGTGATGTTACAACAGTG

mRNA sequence

GTTCATTTCAATGGCGATTTTGAAGGCCTTAGCGTTCATCTCAGTTGCAGCAACTATCTTGAGGAGTTGTTCAGTTGAAGGGCAGATTCGTTCGCCTTGCACGGCCTCAATGATCAACAATTTCACCCCATGTTTCAATGTCATCACTGGAAGTAGCAGCAATGGTTCTTCACAAAAGGAAAGTTGCTGCACCACACTGAGTTCGCTGTCGGGGATAAGCATGGACTGTGTCTGCCTTTTACTTACTGCTAATGTGCCTGTTCCTCTGCCCATCAATGCGGCCCTTGCGCTCATTCTTCCAAGTTCTTGTAACATTACTAACTTGCCTGCACAATGCAAAGCATCAGCTTCTCCCCTGCCATCACCAGGACCTGTCTCACTTGGACCAGCTGCACCATCTCCTACTGCAGCTGCTTCTCCTCTAAGCCCACAAGGTAACCTCCATGTGCATGATTATCTAATCTTTTTCCAAAGCAGTAGCAGTAGCTCCGGCACCAGAAAGCAGCCAGCCTCAGCCGCAGAAATTGACACCGACGTATTCTCCGGCGGAATCGCAAGCTCCAGAAGCAGCCCACCGTCGGATCCGACCGGTTTTAGCTCCATCCGCATCTACTCCATCTTGTTCCCGCTCACCATCTCTCTTGCTGATTTCCATAGCCGTGATGGTCTTCAAATCCCATTGAACAGTTGTTTTGCTTTCGTTCCTCTACTAATTGAATGTGCTTGATGCACGTTTGTTTCCCTCTTTTCACTCTGCAAAAACGTTCAGAAATCGAAACTTCATTCCGATTTCGATGCCAGTTCTGATATATCTTTAATCAAATGTGATGTTACAACAGTG

Coding sequence (CDS)

ATGGCGATTTTGAAGGCCTTAGCGTTCATCTCAGTTGCAGCAACTATCTTGAGGAGTTGTTCAGTTGAAGGGCAGATTCGTTCGCCTTGCACGGCCTCAATGATCAACAATTTCACCCCATGTTTCAATGTCATCACTGGAAGTAGCAGCAATGGTTCTTCACAAAAGGAAAGTTGCTGCACCACACTGAGTTCGCTGTCGGGGATAAGCATGGACTGTGTCTGCCTTTTACTTACTGCTAATGTGCCTGTTCCTCTGCCCATCAATGCGGCCCTTGCGCTCATTCTTCCAAGTTCTTGTAACATTACTAACTTGCCTGCACAATGCAAAGCATCAGCTTCTCCCCTGCCATCACCAGGACCTGTCTCACTTGGACCAGCTGCACCATCTCCTACTGCAGCTGCTTCTCCTCTAAGCCCACAAGGTAACCTCCATGTGCATGATTATCTAATCTTTTTCCAAAGCAGTAGCAGTAGCTCCGGCACCAGAAAGCAGCCAGCCTCAGCCGCAGAAATTGACACCGACGTATTCTCCGGCGGAATCGCAAGCTCCAGAAGCAGCCCACCGTCGGATCCGACCGGTTTTAGCTCCATCCGCATCTACTCCATCTTGTTCCCGCTCACCATCTCTCTTGCTGATTTCCATAGCCGTGATGGTCTTCAAATCCCATTGAACAGTTGTTTTGCTTTCGTTCCTCTACTAATTGAATGTGCTTGA

Protein sequence

MAILKALAFISVAATILRSCSVEGQIRSPCTASMINNFTPCFNVITGSSSNGSSQKESCCTTLSSLSGISMDCVCLLLTANVPVPLPINAALALILPSSCNITNLPAQCKASASPLPSPGPVSLGPAAPSPTAAASPLSPQGNLHVHDYLIFFQSSSSSSGTRKQPASAAEIDTDVFSGGIASSRSSPPSDPTGFSSIRIYSILFPLTISLADFHSRDGLQIPLNSCFAFVPLLIECA

Homology

[Close]

BLAST of CmaCh19G000300 vs. TrEMBL
Match: A0A0A0KED3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G410090 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 8.8e-52
Identity = 118/142 (83.10%), Postives = 125/142 (88.03%), Query Frame = 1


Query: 1   MAILKALAFISVAATILRSCSVEGQIRSPCTASMINNFTPCFNVITGSSSNGSSQKESCC 60
           M ILKALAFI+VAATIL S SVEGQI  PCT SMINNFTPCFN ITGSSSNGSSQ+ESCC
Sbjct: 4   MEILKALAFITVAATILGSFSVEGQIPYPCTTSMINNFTPCFNAITGSSSNGSSQQESCC 63

Query: 61  TTLSSLSGISMDCVCLLLTANVPVPLPINAALALILPSSCNITNLPAQCKASASPLPSPG 120
           T+L SLSG SMDC CLLLTANVPVPLPINAAL LILPSSCNI+NLPAQCKA+ S LPSPG
Sbjct: 64  TSLRSLSGTSMDCACLLLTANVPVPLPINAALGLILPSSCNISNLPAQCKATGSQLPSPG 123

Query: 121 PVSLGPAAPSPTAAASP-LSPQ 142
           P+SLGP AP+ TAA SP LSPQ
Sbjct: 124 PISLGPTAPTSTAAISPKLSPQ 145

[Close]

BLAST of CmaCh19G000300 vs. TrEMBL
Match: B9SFI6_RICCO (Lipid binding protein, putative OS=Ricinus communis GN=RCOM_0646520 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.6e-31
Identity = 83/144 (57.64%), Postives = 103/144 (71.53%), Query Frame = 1


Query: 1   MAILKALAFISVAATILRSCSVEGQIRSPCTASMINNF-TPCFNVITGSSSNGSSQKESC 60
           M  LK L  I++ +TI+ + SV GQI +PCT SMI +F TPC N ITGSS+NG+S   SC
Sbjct: 1   MENLKILQVIAMISTII-AISVNGQISTPCTTSMITSFFTPCINFITGSSNNGNSPTTSC 60

Query: 61  CTTLSSLSGISMDCVCLLLTANVPVPLPINAALALILPSSCNITNLPAQCKASASPLPSP 120
           C +L SL   SMDC CL++TANVPV LPIN  LA+ LP +C +  +P QCKAS SPLP+P
Sbjct: 61  CNSLKSLMSTSMDCACLIVTANVPVQLPINRTLAISLPRACKMNGVPLQCKASGSPLPAP 120

Query: 121 GPVSLGPAAPSPTAAASPLSPQGN 144
           GPV LGP  P P+AA  PLSP+ +
Sbjct: 121 GPVLLGPTLPPPSAA--PLSPRAS 141

[Close]

BLAST of CmaCh19G000300 vs. TrEMBL
Match: M5VNN5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021933mg PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.5e-30
Identity = 89/173 (51.45%), Postives = 112/173 (64.74%), Query Frame = 1


Query: 1   MAILKALAFISVAATIL--RSCSVEGQIRSPCTASMINNFTPCFNVITGSSSNGSSQK-E 60
           M + KA   I++  T+L     S+ GQI +PCTASMI+NFTPC N ITGSSSNG+S   +
Sbjct: 1   MELFKAFRLITIPITLLIISLTSINGQISTPCTASMISNFTPCINYITGSSSNGTSPPTQ 60

Query: 61  SCCTTLSSLSGISMDCVCLLLTANVPVPLPINAALALILPSSCNITNLPAQCKASASPLP 120
           SCC+++ SL G   DC CLL+TA+VPV LPIN  LAL LP +CN+  +P QCKASASPL 
Sbjct: 61  SCCSSVKSLLGTGTDCACLLITASVPVQLPINRTLALSLPRACNMGGIPLQCKASASPLA 120

Query: 121 SPGPVSLGPAAPSPTAAASPLSPQGNLHVHDYLIFFQSSSSSSGTRK--QPAS 169
           +PGP  LGP       A+SPLSP+ +  V       +S +  SGT    QP S
Sbjct: 121 APGPALLGP------TASSPLSPRASKAV------AESPTPQSGTADDLQPTS 161

[Close]

BLAST of CmaCh19G000300 vs. TrEMBL
Match: B9GSL1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s05110g PE=3 SV=2)

HSP 1 Score: 137.9 bits (346), Expect = 1.6e-29
Identity = 79/141 (56.03%), Postives = 98/141 (69.50%), Query Frame = 1


Query: 1   MAILKALAFISVAATILRSCSVEGQIRSPCTASMINNFTPCFNVITGSSSNGSSQKESCC 60
           + ++K +A +S    I    SV GQI +PCT SMI++FTPC N ITGS+SNGS    SCC
Sbjct: 4   LKVIKLMALLSTLLVI----SVNGQINTPCTMSMISSFTPCVNFITGSTSNGSPPTASCC 63

Query: 61  TTLSSLSGISMDCVCLLLTANVPVPLPINAALALILPSSCNITNLPAQCKASASPLPSPG 120
           ++L SL    MDC CLLLTANVPV LPIN  LA+ LP +C    +P QCK+S +PLP+PG
Sbjct: 64  SSLKSLMSTGMDCACLLLTANVPVQLPINRTLAISLPGAC---GMPGQCKSSGTPLPAPG 123

Query: 121 PVSLGPAAPSPTAAASPLSPQ 142
           P SLGP  P P  AA+PLSP+
Sbjct: 124 PFSLGPTLPPP--AAAPLSPR 135

[Close]

BLAST of CmaCh19G000300 vs. TrEMBL
Match: B9H8A8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s23360g PE=4 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 3.1e-28
Identity = 89/204 (43.63%), Postives = 121/204 (59.31%), Query Frame = 1


Query: 4   LKALAFISVAATILRSCSVEGQIRSPCTASMINNFTPCFNVITGSSSNGSSQKESCCTTL 63
           L+    I++ +T+L   SV GQI +PCT SMI++FTPC N ITGS++NGSS   SCC++ 
Sbjct: 4   LRVFNLIAILSTLL-VISVNGQISTPCTTSMISSFTPCINFITGSTNNGSSPTGSCCSSF 63

Query: 64  SSLSGISMDCVCLLLTANVPVPLPINAALALILPSSCNITNLPAQCKASASPLPSPGPVS 123
            SL    MDC CLL+TANVP+ LPIN  LA+ LP +C ++ +P  CKAS +PLP+PGPV 
Sbjct: 64  KSLMSTGMDCACLLITANVPLQLPINRTLAITLPRACKMSGVPMLCKASGTPLPAPGPVL 123

Query: 124 LGPAAPSPTAAASPLSPQGNLHV------HDYLIFFQSSSSSSGTRKQPASAAEIDTDVF 183
           LGP  P PT AA PLSP+ +  V         +    + +S     + P + A I   + 
Sbjct: 124 LGPTLP-PT-AAYPLSPRASKAVALAPAPESEITLPLTPASPPEPVEAPPATAGIRPVLS 183

Query: 184 SGGIASSRSSPPSDPTGFSSIRIY 202
                 S  SPPS    F +I ++
Sbjct: 184 PSASMPSYVSPPSSLLIFLAIMVF 204

[Close]

BLAST of CmaCh19G000300 vs. TAIR10
Match: AT1G05450.2 (AT1G05450.2 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 105.1 bits (261), Expect = 5.9e-23
Identity = 70/195 (35.90%), Postives = 104/195 (53.33%), Query Frame = 1


Query: 21  SVEGQIRSPCTASMINNFTPCFNVITGSSSNGSSQKESCCTTLSSLSGISMDCVCLLLTA 80
           S+  QI +PC+ SM+++ T C + +TG    GS     CC  L SL+G  MDC+CL++TA
Sbjct: 24  SILAQINTPCSPSMLSSVTGCTSFLTGG---GSFPTSDCCGALKSLTGTGMDCLCLIVTA 83

Query: 81  NVPVPLPINAALALILPSSCNITNLPAQCKASASPLPSPGPVSLGPAAPSPTAAASPLSP 140
            VP+ +PIN  LA+ LP +C I  +P QCKASA+PLP+PGP S GP   SPT + +   P
Sbjct: 84  GVPISIPINRTLAISLPRACGIPGVPVQCKASAAPLPTPGPASFGPTT-SPTDSQTS-DP 143

Query: 141 QGNLHVHDYLIFFQSSSSSSGTRKQPASAAEIDTDVFSGGIASSRSSPP-SDPTGFSSIR 200
           +G+               +S T  Q  +  ++      G        PP S P+   S++
Sbjct: 144 EGSASFR---------PPTSPTTSQTPNDKDLSGSGNGGDPMGFAPPPPSSSPSSSHSLK 203

Query: 201 IYSILFPLTISLADF 215
           +  +LF    ++  F
Sbjct: 204 LSYLLFAFAFTIIKF 204

[Close]

BLAST of CmaCh19G000300 vs. TAIR10
Match: AT2G48140.1 (AT2G48140.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-21
Identity = 74/191 (38.74%), Postives = 97/191 (50.79%), Query Frame = 1


Query: 25  QIRSPCTASMINNFTPCFNVITGSSSNGSSQKESCCTTLSSLSGISMDCVCLLLTANVPV 84
           QI +PCT+SMI+ FTPC N ITGSS    +    CC +L +L+   M C CL+LTANVP+
Sbjct: 22  QISTPCTSSMISTFTPCLNFITGSSGGSVTPTAGCCDSLKTLTNTGMGCACLILTANVPL 81

Query: 85  PLP-INAALALILPSSCNITNLPAQCKASASPLPSPGPVSLGPAAPSPTAAASPLSPQGN 144
           P   IN  LAL LP +C +  +P QC+A+ +PLP+PG V    A P   +A SP      
Sbjct: 82  PTGFINRTLALALPRACKMGGVPIQCQAAGTPLPAPGQVPFLIAPPPQVSAFSP------ 141

Query: 145 LHVHDYLIFFQSSSSSSGTRKQPASAAEIDTDVFSGGIASSRSSP---PSDPTGFSSIRI 204
                       +S ++GT    A A +   D  +G    S   P   P  PTG +    
Sbjct: 142 -----------GASKAAGTTPTQAPAPDTPADGPTGPTTKSGIRPVDQPMQPTGLAQSST 195

Query: 205 YSILFPLTISL 212
              L  L ISL
Sbjct: 202 SPFLPLLFISL 195

[Close]

BLAST of CmaCh19G000300 vs. TAIR10
Match: AT3G22620.1 (AT3G22620.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 88.6 bits (218), Expect = 5.7e-18
Identity = 53/135 (39.26%), Postives = 78/135 (57.78%), Query Frame = 1


Query: 7   LAFISVAATILRSCSVEGQIRSPCTASMINNFTPCFNVITGSSSNGSSQKESCCTTLSSL 66
           +A I+V A  +R    + Q  S CT SM+   +PC   IT SSSNG+S    CC +L SL
Sbjct: 9   VAMIAVLALPIRG---QQQPLSQCTPSMMTTVSPCMGFITNSSSNGTSPSSDCCNSLRSL 68

Query: 67  SGISMDCVCLLLTANVPVPLPINAALALILPSSCNITNLPAQCKASASPLPSPGPVSLGP 126
           +   M C+CL++T  VP  +PIN   A+ LP +CN+  +P QC+A+ +P  +PGP +   
Sbjct: 69  TTGGMGCLCLIVTGTVPFNIPINRTTAVSLPRACNMPRVPLQCQANIAPAAAPGPAATFG 128

Query: 127 AAPSPTAAASPLSPQ 142
            + SP     P+ P+
Sbjct: 129 PSMSPGPETDPIVPE 140

[Close]

BLAST of CmaCh19G000300 vs. NCBI nr
Match: gi|659097102|ref|XP_008449443.1| (PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Cucumis melo])

HSP 1 Score: 213.8 bits (543), Expect = 3.3e-52
Identity = 117/142 (82.39%), Postives = 126/142 (88.73%), Query Frame = 1


Query: 1   MAILKALAFISVAATILRSCSVEGQIRSPCTASMINNFTPCFNVITGSSSNGSSQKESCC 60
           M ILKALA+I+VAATIL S SVEGQ   PCT SM+NNFTPCFN ITGSSSNGSSQ+ESCC
Sbjct: 3   MEILKALAYITVAATILGSFSVEGQTPYPCTTSMMNNFTPCFNAITGSSSNGSSQQESCC 62

Query: 61  TTLSSLSGISMDCVCLLLTANVPVPLPINAALALILPSSCNITNLPAQCKASASPLPSPG 120
           T+L SLSG SMDC CLLLTANVPVPLPINAAL LILPSSCNI+NLPAQCKAS SPLPSPG
Sbjct: 63  TSLRSLSGTSMDCACLLLTANVPVPLPINAALGLILPSSCNISNLPAQCKASGSPLPSPG 122

Query: 121 PVSLGPAAPSPTAAASP-LSPQ 142
           P+SLGP AP+PTAA SP LSP+
Sbjct: 123 PISLGPTAPTPTAATSPELSPR 144

[Close]

BLAST of CmaCh19G000300 vs. NCBI nr
Match: gi|778716219|ref|XP_004140224.2| (PREDICTED: protein YLS3-like [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 1.3e-51
Identity = 118/142 (83.10%), Postives = 125/142 (88.03%), Query Frame = 1


Query: 1   MAILKALAFISVAATILRSCSVEGQIRSPCTASMINNFTPCFNVITGSSSNGSSQKESCC 60
           M ILKALAFI+VAATIL S SVEGQI  PCT SMINNFTPCFN ITGSSSNGSSQ+ESCC
Sbjct: 4   MEILKALAFITVAATILGSFSVEGQIPYPCTTSMINNFTPCFNAITGSSSNGSSQQESCC 63

Query: 61  TTLSSLSGISMDCVCLLLTANVPVPLPINAALALILPSSCNITNLPAQCKASASPLPSPG 120
           T+L SLSG SMDC CLLLTANVPVPLPINAAL LILPSSCNI+NLPAQCKA+ S LPSPG
Sbjct: 64  TSLRSLSGTSMDCACLLLTANVPVPLPINAALGLILPSSCNISNLPAQCKATGSQLPSPG 123

Query: 121 PVSLGPAAPSPTAAASP-LSPQ 142
           P+SLGP AP+ TAA SP LSPQ
Sbjct: 124 PISLGPTAPTSTAAISPKLSPQ 145

[Close]

BLAST of CmaCh19G000300 vs. NCBI nr
Match: gi|1009147642|ref|XP_015891521.1| (PREDICTED: protein YLS3-like [Ziziphus jujuba])

HSP 1 Score: 151.8 bits (382), Expect = 1.6e-33
Identity = 92/194 (47.42%), Postives = 129/194 (66.49%), Query Frame = 1


Query: 1   MAILKALAFISVAATIL--RSCSVEGQIRSPCTASMINNFTPCFNVITGSSSNGSSQKES 60
           M  L    FI++ A+I+   S SV GQI +PCTASMI++FTPC N ITGS++NGSS  +S
Sbjct: 1   MKFLVVFQFIAILASIIVISSISVNGQINTPCTASMISSFTPCINFITGSTNNGSSPTQS 60

Query: 61  CCTTLSSLSGISMDCVCLLLTANVPVPLPINAALALILPSSCNITNLPAQCKASASPLPS 120
           CC++L S++  SMDC+CL++TANVP PLP+N  LA+ LP +CN++ +P QCKA+ SPLP+
Sbjct: 61  CCSSLLSMTSGSMDCICLVITANVPFPLPVNRTLAISLPQACNMSGVPLQCKATGSPLPA 120

Query: 121 PGPVSLGPAAPSPTAAASPLSPQGNLHVHDYLIFFQSSSSSSGTRKQPASAAEIDTDVFS 180
           PGPV LGP  P P  A SP SPQ +       +   +++++    +  A+AA   T+   
Sbjct: 121 PGPVFLGPTLPPP--AFSPFSPQAS------KVSATAAAAAPDITETAAAAAPDKTE--- 180

Query: 181 GGIASSRSSPPSDP 193
              A++R SP S P
Sbjct: 181 ---ANTRLSPSSTP 180

[Close]

BLAST of CmaCh19G000300 vs. NCBI nr
Match: gi|255567552|ref|XP_002524755.1| (PREDICTED: non-specific lipid transfer protein-like 1 [Ricinus communis])

HSP 1 Score: 142.1 bits (357), Expect = 1.2e-30
Identity = 83/144 (57.64%), Postives = 103/144 (71.53%), Query Frame = 1


Query: 1   MAILKALAFISVAATILRSCSVEGQIRSPCTASMINNF-TPCFNVITGSSSNGSSQKESC 60
           M  LK L  I++ +TI+ + SV GQI +PCT SMI +F TPC N ITGSS+NG+S   SC
Sbjct: 1   MENLKILQVIAMISTII-AISVNGQISTPCTTSMITSFFTPCINFITGSSNNGNSPTTSC 60

Query: 61  CTTLSSLSGISMDCVCLLLTANVPVPLPINAALALILPSSCNITNLPAQCKASASPLPSP 120
           C +L SL   SMDC CL++TANVPV LPIN  LA+ LP +C +  +P QCKAS SPLP+P
Sbjct: 61  CNSLKSLMSTSMDCACLIVTANVPVQLPINRTLAISLPRACKMNGVPLQCKASGSPLPAP 120

Query: 121 GPVSLGPAAPSPTAAASPLSPQGN 144
           GPV LGP  P P+AA  PLSP+ +
Sbjct: 121 GPVLLGPTLPPPSAA--PLSPRAS 141

[Close]

BLAST of CmaCh19G000300 vs. NCBI nr
Match: gi|1021479425|ref|XP_016182911.1| (PREDICTED: non-specific lipid transfer protein-like 1 [Arachis ipaensis])

HSP 1 Score: 141.0 bits (354), Expect = 2.7e-30
Identity = 75/123 (60.98%), Postives = 89/123 (72.36%), Query Frame = 1


Query: 22  VEGQIRSPCTASMINNFTPCFNVITGSSSNGSSQKESCCTTLSSLSGISMDCVCLLLTAN 81
           V+GQI +PCT SMI NFTPC N ITGSSSNG +   SCC +L SL   S+DC CL+++AN
Sbjct: 27  VKGQITTPCTTSMITNFTPCANFITGSSSNGLAPSSSCCDSLRSLMSNSIDCACLVISAN 86

Query: 82  VPVPLPINAALALILPSSCNITNLPAQCKASASPLPSPGPVSLGPAAPS-PTAAASPLSP 141
            P+PLPIN+ LAL LP +CNI  LP QCKAS SP+P+PGP  LG    S P  A SPLSP
Sbjct: 87  APIPLPINSVLALFLPQACNINELPLQCKASGSPIPAPGPAMLGSNDQSLPPIAESPLSP 146

Query: 142 QGN 144
           Q +
Sbjct: 147 QAS 149

The following BLAST results are available for this feature:

BLAST of CmaCh19G000300 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh19G000300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KED3_CUCSA	8.8e-52	83.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G410090 PE=4 SV=1	[more]
B9SFI6_RICCO	8.6e-31	57.64	Lipid binding protein, putative OS=Ricinus communis GN=RCOM_0646520 PE=3 SV=1	[more]
M5VNN5_PRUPE	9.5e-30	51.45	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021933mg PE=4 SV=1	[more]
B9GSL1_POPTR	1.6e-29	56.03	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s05110g PE=3 SV=2	[more]
B9H8A8_POPTR	3.1e-28	43.63	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s23360g PE=4 SV=2	[more]

BLAST of CmaCh19G000300 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05450.2	5.9e-23	35.90	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT2G48140.1	1.1e-21	38.74	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT3G22620.1	5.7e-18	39.26	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]

BLAST of CmaCh19G000300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097102\|ref\|XP_008449443.1\|	3.3e-52	82.39	PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Cucumis m...	[more]
gi\|778716219\|ref\|XP_004140224.2\|	1.3e-51	83.10	PREDICTED: protein YLS3-like [Cucumis sativus]	[more]
gi\|1009147642\|ref\|XP_015891521.1\|	1.6e-33	47.42	PREDICTED: protein YLS3-like [Ziziphus jujuba]	[more]
gi\|255567552\|ref\|XP_002524755.1\|	1.2e-30	57.64	PREDICTED: non-specific lipid transfer protein-like 1 [Ricinus communis]	[more]
gi\|1021479425\|ref\|XP_016182911.1\|	2.7e-30	60.98	PREDICTED: non-specific lipid transfer protein-like 1 [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044699	single-organism process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G000300.1	CmaCh19G000300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 23..109 score: 6.1
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 30..109 score: 0.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 27..109 score: 5.2
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 33..111 score: 4.
None	No IPR available	PANTHER	PTHR33044	FAMILY NOT NAMED	coord: 1..141 score: 4.5
None	No IPR available	PANTHER	PTHR33044:SF34	SUBFAMILY NOT NAMED	coord: 1..141 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh19G000300	Cucsa.184530	Cucumber (Gy14) v1	cgycmaB0525
CmaCh19G000300	Cla006044	Watermelon (97103) v1	cmawmB487
CmaCh19G000300	Csa6G410090	Cucumber (Chinese Long) v2	cmacuB520
CmaCh19G000300	MELO3C014397	Melon (DHL92) v3.5.1	cmameB475
CmaCh19G000300	ClCG07G000380	Watermelon (Charleston Gray)	cmawcgB469
CmaCh19G000300	CSPI06G22070	Wild cucumber (PI 183967)	cmacpiB526
CmaCh19G000300	Lsi05G016190	Bottle gourd (USVL1VR-Ls)	cmalsiB495
CmaCh19G000300	Lsi05G009450	Bottle gourd (USVL1VR-Ls)	cmalsiB486
CmaCh19G000300	Cp4.1LG03g10790	Cucurbita pepo (Zucchini)	cmacpeB536
CmaCh19G000300	MELO3C014397.2	Melon (DHL92) v3.6.1	cmamedB549
CmaCh19G000300	MELO3C006518.2	Melon (DHL92) v3.6.1	cmamedB557
CmaCh19G000300	CsaV3_3G013110	Cucumber (Chinese Long) v3	cmacucB0619
CmaCh19G000300	CsaV3_6G037160	Cucumber (Chinese Long) v3	cmacucB0631
CmaCh19G000300	Cla97C05G086180	Watermelon (97103) v2	cmawmbB534
CmaCh19G000300	Cla97C07G128650	Watermelon (97103) v2	cmawmbB540
CmaCh19G000300	Bhi01G000570	Wax gourd	cmawgoB0638
CmaCh19G000300	Bhi05G000227	Wax gourd	cmawgoB0645
CmaCh19G000300	CsGy6G021330	Cucumber (Gy14) v2	cgybcmaB782
CmaCh19G000300	CsGy3G013120	Cucumber (Gy14) v2	cgybcmaB380
CmaCh19G000300	Carg16833	Silver-seed gourd	carcmaB1049

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh19G000300	CmaCh14G017240	Cucurbita maxima (Rimu)	cmacmaB260
CmaCh19G000300	CmaCh17G002240	Cucurbita maxima (Rimu)	cmacmaB361

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G000300	Silver-seed gourd	carcmaB0144
CmaCh19G000300	Cucumber (Chinese Long) v3	cmacucB0610
CmaCh19G000300	Watermelon (97103) v2	cmawmbB542
CmaCh19G000300	Watermelon (97103) v2	cmawmbB556
CmaCh19G000300	Wax gourd	cmawgoB0673
CmaCh19G000300	Cucurbita maxima (Rimu)	cmacmaB363
CmaCh19G000300	Cucurbita maxima (Rimu)	cmacmaB447
CmaCh19G000300	Cucurbita maxima (Rimu)	cmacmaB450
CmaCh19G000300	Cucurbita maxima (Rimu)	cmacmaB465
CmaCh19G000300	Cucurbita moschata (Rifu)	cmacmoB506
CmaCh19G000300	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G000300	Cucurbita moschata (Rifu)	cmacmoB521
CmaCh19G000300	Cucurbita moschata (Rifu)	cmacmoB523
CmaCh19G000300	Cucurbita moschata (Rifu)	cmacmoB536
CmaCh19G000300	Wild cucumber (PI 183967)	cmacpiB514
CmaCh19G000300	Melon (DHL92) v3.5.1	cmameB460
CmaCh19G000300	Melon (DHL92) v3.5.1	cmameB477
CmaCh19G000300	Watermelon (Charleston Gray)	cmawcgB449
CmaCh19G000300	Watermelon (Charleston Gray)	cmawcgB467
CmaCh19G000300	Watermelon (97103) v1	cmawmB480
CmaCh19G000300	Cucurbita pepo (Zucchini)	cmacpeB520
CmaCh19G000300	Cucurbita pepo (Zucchini)	cmacpeB522
CmaCh19G000300	Cucurbita pepo (Zucchini)	cmacpeB530
CmaCh19G000300	Cucurbita pepo (Zucchini)	cmacpeB543
CmaCh19G000300	Cucurbita pepo (Zucchini)	cmacpeB550
CmaCh19G000300	Bottle gourd (USVL1VR-Ls)	cmalsiB478
CmaCh19G000300	Bottle gourd (USVL1VR-Ls)	cmalsiB491
CmaCh19G000300	Melon (DHL92) v3.6.1	cmamedB532
CmaCh19G000300	Melon (DHL92) v3.6.1	cmamedB553