CmaCh19G000270 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G000270
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr19 : 148122 .. 148827 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCATAAATGGACGATAGGTGGAGTCAACAGGTCTCTTAGGGTTCCCTCATCTGGGATCCTTGGAGAAGAGGATCAAGTTGGCCCTTGCGAACAACTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCAGTAAAAGAAAGGAAAATCCATGGACCGACCTCATCGTCTCCATCTCATAGGAACTACGGTGTTTTATTCTCCTCCTGTCGTGGGATCTGTCCTCGAACTATAAGTATGAACCAACAAACAAAAAAAAAAGAAAAAAAATCAATTCTTGACTTTGTATAAAGTGATAAAAATGGACAGATTTCTTCTCTCTCTTATTTAATTCTCTCCCCTAAACCACGGTGTTTGCTCTCCATCTTCCGCCATAAACATTTTGCAAAAGCTGAAATATTACCACTACGCTGCATAAAAAGCAACAAAAAAACCAGGCTGAGAGACACATAAGAACACTAAAAGACTGCCACTGTCATTACTATTCCAGAATCAAACCCACCCCTTCTCCTCTTTTGTGGGGCAAAAAATAAGAATCTGTTCGGTAAGTTCTTTGATTCTTGAATTTTTCTCTGTTTCTTGTTCTTTCCATGATGTCTGAATTTCATGTGTTCTTCAGGTTCTACAACACTCATGAACACAACCCATCGTGTTCATCAGGTACCCTCCAGCTTTCTTTCTTCTATGCAACAATCTAA

mRNA sequence

ATGGATCATAAATGGACGATAGGTGGAGTCAACAGGTCTCTTAGGGTTCCCTCATCTGGGATCCTTGGAGAAGAGGATCAAGTTGGCCCTTGCGAACAACTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCAGTTCTACAACACTCATGAACACAACCCATCGTGTTCATCAGGTACCCTCCAGCTTTCTTTCTTCTATGCAACAATCTAA

Coding sequence (CDS)

ATGGATCATAAATGGACGATAGGTGGAGTCAACAGGTCTCTTAGGGTTCCCTCATCTGGGATCCTTGGAGAAGAGGATCAAGTTGGCCCTTGCGAACAACTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCAGTTCTACAACACTCATGAACACAACCCATCGTGTTCATCAGGTACCCTCCAGCTTTCTTTCTTCTATGCAACAATCTAA

Protein sequence

MDHKWTIGGVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSEMQFYNTHEHNPSCSSGTLQLSFFYATI
Homology
[Close]
BLAST of CmaCh19G000270 vs. TrEMBL
Match: U5CKY2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s02909p00006680 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.8e-14
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 1 

Query: 1  MDHKWTIGGVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSEMQ 48
          MD  WT+ GV  SLRVPSSGI GEEDQVGPCEQLDALSPFNPLSEM+
Sbjct: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMR 47

[Close]
BLAST of CmaCh19G000270 vs. TrEMBL
Match: A0A067JR25_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17569 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.0e-12
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 1 

Query: 1  MDHKWTIGGVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSE 46
          MD  WTI GV  S RVPSSGI GEEDQVGPCEQLDALSPFNPL++
Sbjct: 1  MDRTWTIVGVGGSPRVPSSGIPGEEDQVGPCEQLDALSPFNPLAK 45

[Close]
BLAST of CmaCh19G000270 vs. TrEMBL
Match: A0A0K9PBW1_ZOSMR (Uncharacterized protein OS=Zostera marina GN=ZOSMA_313G00200 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-11
Identity = 35/46 (76.09%), Postives = 35/46 (76.09%), Query Frame = 1 

Query: 1  MDHKWTIGGVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSEM 47
          MDH W   GV  S RVPSS I GEEDQVGPCEQ DAL PFNPLSEM
Sbjct: 1  MDHTWMTVGVGSSSRVPSSEIPGEEDQVGPCEQFDALPPFNPLSEM 46

[Close]
BLAST of CmaCh19G000270 vs. TrEMBL
Match: U5D9L3_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00061p00179620 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.7e-11
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 1 

Query: 1  MDHKWTIGGVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSEM 47
          MD  WTI GV+ S RV S+GI GEEDQVGPCEQLDALSPF PL EM
Sbjct: 1  MDRTWTIVGVDGSHRVTSAGIPGEEDQVGPCEQLDALSPFTPLIEM 46

[Close]
BLAST of CmaCh19G000270 vs. TrEMBL
Match: A0A151UE16_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_050059 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.7e-09
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 1 

Query: 9  GVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSEMQ 48
          GV  S RV SSGI GEEDQVGPCEQLDALSPFNPLSEM+
Sbjct: 3  GVGGSPRVSSSGIPGEEDQVGPCEQLDALSPFNPLSEMR 41

[Close]
BLAST of CmaCh19G000270 vs. NCBI nr
Match: gi|548835773|gb|ERM97427.1| (hypothetical protein AMTR_s02909p00006680 [Amborella trichopoda])

HSP 1 Score: 85.1 bits (209), Expect = 5.4e-14
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 1 

Query: 1  MDHKWTIGGVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSEMQ 48
          MD  WT+ GV  SLRVPSSGI GEEDQVGPCEQLDALSPFNPLSEM+
Sbjct: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMR 47

[Close]
BLAST of CmaCh19G000270 vs. NCBI nr
Match: gi|643713746|gb|KDP26411.1| (hypothetical protein JCGZ_17569 [Jatropha curcas])

HSP 1 Score: 77.8 bits (190), Expect = 8.6e-12
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 1 

Query: 1  MDHKWTIGGVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSE 46
          MD  WTI GV  S RVPSSGI GEEDQVGPCEQLDALSPFNPL++
Sbjct: 1  MDRTWTIVGVGGSPRVPSSGIPGEEDQVGPCEQLDALSPFNPLAK 45

[Close]
BLAST of CmaCh19G000270 vs. NCBI nr
Match: gi|901808862|gb|KMZ65670.1| (hypothetical protein ZOSMA_313G00200 [Zostera marina])

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-11
Identity = 35/46 (76.09%), Postives = 35/46 (76.09%), Query Frame = 1 

Query: 1  MDHKWTIGGVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSEM 47
          MDH W   GV  S RVPSS I GEEDQVGPCEQ DAL PFNPLSEM
Sbjct: 1  MDHTWMTVGVGSSSRVPSSEIPGEEDQVGPCEQFDALPPFNPLSEM 46

[Close]
BLAST of CmaCh19G000270 vs. NCBI nr
Match: gi|548861813|gb|ERN19184.1| (hypothetical protein AMTR_s00061p00179620 [Amborella trichopoda])

HSP 1 Score: 74.3 bits (181), Expect = 9.6e-11
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 1 

Query: 1  MDHKWTIGGVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSEM 47
          MD  WTI GV+ S RV S+GI GEEDQVGPCEQLDALSPF PL EM
Sbjct: 1  MDRTWTIVGVDGSHRVTSAGIPGEEDQVGPCEQLDALSPFTPLIEM 46

[Close]
BLAST of CmaCh19G000270 vs. NCBI nr
Match: gi|1012366342|gb|KYP77523.1| (hypothetical protein KK1_050059, partial [Cajanus cajan])

HSP 1 Score: 68.6 bits (166), Expect = 5.2e-09
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 1 

Query: 9  GVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSEMQ 48
          GV  S RV SSGI GEEDQVGPCEQLDALSPFNPLSEM+
Sbjct: 3  GVGGSPRVSSSGIPGEEDQVGPCEQLDALSPFNPLSEMR 41

The following BLAST results are available for this feature:
BLAST of CmaCh19G000270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh19G000270 vs. TrEMBL
Match NameE-valueIdentityDescription
U5CKY2_AMBTC3.8e-1482.98Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s02909p00006680 PE=4 SV=... [more]
A0A067JR25_JATCU6.0e-1280.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17569 PE=4 SV=1[more]
A0A0K9PBW1_ZOSMR2.3e-1176.09Uncharacterized protein OS=Zostera marina GN=ZOSMA_313G00200 PE=4 SV=1[more]
U5D9L3_AMBTC6.7e-1176.09Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00061p00179620 PE=4 SV=... [more]
A0A151UE16_CAJCA3.7e-0984.62Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_050059 PE=4 SV=1[more]
BLAST of CmaCh19G000270 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh19G000270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|548835773|gb|ERM97427.1|5.4e-1482.98hypothetical protein AMTR_s02909p00006680 [Amborella trichopoda][more]
gi|643713746|gb|KDP26411.1|8.6e-1280.00hypothetical protein JCGZ_17569 [Jatropha curcas][more]
gi|901808862|gb|KMZ65670.1|3.3e-1176.09hypothetical protein ZOSMA_313G00200 [Zostera marina][more]
gi|548861813|gb|ERN19184.1|9.6e-1176.09hypothetical protein AMTR_s00061p00179620 [Amborella trichopoda][more]
gi|1012366342|gb|KYP77523.1|5.2e-0984.62hypothetical protein KK1_050059, partial [Cajanus cajan][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G000270.1CmaCh19G000270.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G000270Cucurbita moschata (Rifu)cmacmoB506
CmaCh19G000270Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G000270Cucurbita moschata (Rifu)cmacmoB521
CmaCh19G000270Cucurbita moschata (Rifu)cmacmoB523
CmaCh19G000270Cucurbita moschata (Rifu)cmacmoB536
CmaCh19G000270Wild cucumber (PI 183967)cmacpiB514
CmaCh19G000270Wild cucumber (PI 183967)cmacpiB526
CmaCh19G000270Cucumber (Chinese Long) v2cmacuB520
CmaCh19G000270Melon (DHL92) v3.5.1cmameB460
CmaCh19G000270Melon (DHL92) v3.5.1cmameB474
CmaCh19G000270Melon (DHL92) v3.5.1cmameB475
CmaCh19G000270Melon (DHL92) v3.5.1cmameB477
CmaCh19G000270Watermelon (Charleston Gray)cmawcgB449
CmaCh19G000270Watermelon (Charleston Gray)cmawcgB467
CmaCh19G000270Watermelon (Charleston Gray)cmawcgB469
CmaCh19G000270Watermelon (97103) v1cmawmB480
CmaCh19G000270Watermelon (97103) v1cmawmB487
CmaCh19G000270Cucurbita pepo (Zucchini)cmacpeB520
CmaCh19G000270Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G000270Cucurbita pepo (Zucchini)cmacpeB530
CmaCh19G000270Cucurbita pepo (Zucchini)cmacpeB536
CmaCh19G000270Cucurbita pepo (Zucchini)cmacpeB543
CmaCh19G000270Cucurbita pepo (Zucchini)cmacpeB550
CmaCh19G000270Bottle gourd (USVL1VR-Ls)cmalsiB478
CmaCh19G000270Bottle gourd (USVL1VR-Ls)cmalsiB495
CmaCh19G000270Bottle gourd (USVL1VR-Ls)cmalsiB491
CmaCh19G000270Cucumber (Gy14) v2cgybcmaB216
CmaCh19G000270Cucumber (Gy14) v2cgybcmaB380
CmaCh19G000270Cucumber (Gy14) v2cgybcmaB782
CmaCh19G000270Melon (DHL92) v3.6.1cmamedB532
CmaCh19G000270Melon (DHL92) v3.6.1cmamedB549
CmaCh19G000270Melon (DHL92) v3.6.1cmamedB550
CmaCh19G000270Melon (DHL92) v3.6.1cmamedB553
CmaCh19G000270Melon (DHL92) v3.6.1cmamedB557
CmaCh19G000270Silver-seed gourdcarcmaB0144
CmaCh19G000270Silver-seed gourdcarcmaB1049
CmaCh19G000270Silver-seed gourdcarcmaB1080
CmaCh19G000270Cucumber (Chinese Long) v3cmacucB0613
CmaCh19G000270Cucumber (Chinese Long) v3cmacucB0610
CmaCh19G000270Cucumber (Chinese Long) v3cmacucB0619
CmaCh19G000270Cucumber (Chinese Long) v3cmacucB0631
CmaCh19G000270Watermelon (97103) v2cmawmbB534
CmaCh19G000270Watermelon (97103) v2cmawmbB542
CmaCh19G000270Watermelon (97103) v2cmawmbB556
CmaCh19G000270Wax gourdcmawgoB0638
CmaCh19G000270Wax gourdcmawgoB0645
CmaCh19G000270Wax gourdcmawgoB0673
CmaCh19G000270Cucurbita maxima (Rimu)cmacmaB260
CmaCh19G000270Cucurbita maxima (Rimu)cmacmaB361
CmaCh19G000270Cucurbita maxima (Rimu)cmacmaB363
CmaCh19G000270Cucurbita maxima (Rimu)cmacmaB447
CmaCh19G000270Cucurbita maxima (Rimu)cmacmaB450
CmaCh19G000270Cucurbita maxima (Rimu)cmacmaB465
CmaCh19G000270Cucumber (Gy14) v1cgycmaB0525