CmaCh18G013430 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G013430
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr18 : 10210319 .. 10211671 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGAGTTCATCGCGCTATCTTCGATGTACTATCTAATACTTTTCTTTTTCATTTTGGTTTATCCGTCCCACGTTGTAAAATTGATTCTTTTGCCCAAATAATAAACTTATGGCCACAAAAGATGTTATTGATTGATTTGAAAACCAAAAGGCAGAAAGGCAGAGGAGGAAGGTTATGTGTGGAGTTTGAAACTAAAGAGTCTTGAGAAATTCCATGATGTATGTGTTGAAAGCACAAGAGTGGACCTTGAAGCCTTGAAATCCAGCAGCCTTGGCCAAGGCGTGGAACTCCTGCTCGGTCCTTTCTTTGCCTCCAGGGTTGTGAGCCAGCATTATGACATCGATGTGAATCACTCCCTTGGTGGCAAGGCTGCTGTCTGGTGCAACCGGAAGAATGCATTCTGCCACGATCACCTTCCCATGCTCCGGCAGAGAATCGTGGCAATTCTTCAACAATTTCAGGCAGTGCTGGTCGCTCCAATCGTGACAGATCCACTGCAAACCCCACATTACATCAGACCAAATACATACATACAATACAGAGTCGGTATAGGTATGGGTGTATGTGTTCTAAATTCAGTTACTTTACCTTCATGAAAATAGCATCCCCCTTTGGCACGCTCACAAACATGTCTCCCCCAACATGTTGGACGCCTGCAGCAGCCATTTCAATGAAGAAGCAATTGAGAATTCGGATGCATATTTATTAAATTCCCAGTTCCGAAACAGAGGTTACCTGGGTAGGCAGGGGCGTCCTGAATGACATGAGGGAGGTCGAAGTTGATGCCCCTAATAGAAGGGTACTTGGAGACTATCATGTTGAGAACAGCTCCGGTCCCACCGCCCACATCCACCACTGAATTAAGGCCTTCGAAGCCTTTGTAGGTCTCTAGAATCTTCTTCATGGTAATGGTGGAATGGTCGGACATTCCCCTGTTGAACACCCTGTTGAATCTCGGATCTGTTCCATGATATTCGAACGCCGTCATTCCGTATGCTTTGTTGAATGGAATTCCTCCTTCCAGTACCGCATCTTTCAAATGGTACCTTCATTCCCAAAACATACAAATAAAGTCATGGTTCCTTAAAAATAAAATTATTAAAATTATTCCCAAAACATTTTGGAGCAGGGTAGCAGAGGAGCTAAGCTCTGATCTGACTTCCACATCTAATTGTCTAAAAAGAGTTAATTTTGAATCATTAATTATGCATACACTTGGTTAGATTTATTATTTGTAATTTGAATCTGAAGCAGAGGAAGGATGGAAAGGTGGGTAATTACCAGCTCTCCATGAGGACCTTGTCCTGGTTCATGAGACACAGGGGAGCGATGGAGACGCCGTCTTGA

mRNA sequence

ATGGCCAAGAGCAGAAAGGCAGAGGAGGAAGGTTATGTGTGGAGTTTGAAACTAAAGAGTCTTGAGAAATTCCATGATGTATGTGTTGAAAGCACAAGAGTGGACCTTGAAGCCTTGAAATCCAGCAGCCTTGGCCAAGGCGTGGAACTCCTGCTCGGTCCTTTCTTTGCCTCCAGGGTTGTGAGCCAGCATTATGACATCGATGTGAATCACTCCCTTGGTGGCAAGGCTGCTGTCTGGTGCAACCGGAAGAATGCATTCTGCCACGATCACCTTCCCATGCTCCGGCAGAGAATCGTGGCAATTCTTCAACAATTTCAGGCAGTGCTGGTCGCTCCAATCGTGACAGATCCACTGCAAACCCCACATTACATCAGACCAAATACATACATACAATACAGAGTCGGTATAGAGGTTACCTGGGTAGGCAGGGGCGTCCTGAATGACATGAGGGAGGTCGAAGTTGATGCCCCTAATAGAAGGCAGAGGAAGGATGGAAAGGTGGGTAATTACCAGCTCTCCATGAGGACCTTGTCCTGGTTCATGAGACACAGGGGAGCGATGGAGACGCCGTCTTGA

Coding sequence (CDS)

ATGGCCAAGAGCAGAAAGGCAGAGGAGGAAGGTTATGTGTGGAGTTTGAAACTAAAGAGTCTTGAGAAATTCCATGATGTATGTGTTGAAAGCACAAGAGTGGACCTTGAAGCCTTGAAATCCAGCAGCCTTGGCCAAGGCGTGGAACTCCTGCTCGGTCCTTTCTTTGCCTCCAGGGTTGTGAGCCAGCATTATGACATCGATGTGAATCACTCCCTTGGTGGCAAGGCTGCTGTCTGGTGCAACCGGAAGAATGCATTCTGCCACGATCACCTTCCCATGCTCCGGCAGAGAATCGTGGCAATTCTTCAACAATTTCAGGCAGTGCTGGTCGCTCCAATCGTGACAGATCCACTGCAAACCCCACATTACATCAGACCAAATACATACATACAATACAGAGTCGGTATAGAGGTTACCTGGGTAGGCAGGGGCGTCCTGAATGACATGAGGGAGGTCGAAGTTGATGCCCCTAATAGAAGGCAGAGGAAGGATGGAAAGGTGGGTAATTACCAGCTCTCCATGAGGACCTTGTCCTGGTTCATGAGACACAGGGGAGCGATGGAGACGCCGTCTTGA

Protein sequence

MAKSRKAEEEGYVWSLKLKSLEKFHDVCVESTRVDLEALKSSSLGQGVELLLGPFFASRVVSQHYDIDVNHSLGGKAAVWCNRKNAFCHDHLPMLRQRIVAILQQFQAVLVAPIVTDPLQTPHYIRPNTYIQYRVGIEVTWVGRGVLNDMREVEVDAPNRRQRKDGKVGNYQLSMRTLSWFMRHRGAMETPS

Homology

[Close]

BLAST of CmaCh18G013430 vs. TrEMBL
Match: A0A0E0EI39_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-11
Identity = 52/132 (39.39%), Postives = 74/132 (56.06%), Query Frame = 1


Query: 36  LEALKSSSLGQGVELLLGPFFASRVVSQHYDIDVNHSLGGKAAVWCNRKNAFCHDHLPML 95
           +EA +S   G+  EL L P  A+ VV +H  +DV H L  +  V   R++A  H HLP+L
Sbjct: 43  VEAGESGGAGEVPELPLVPLLAAGVVGEHDHVDVEHPLLPRRRVGALRQHALHHHHLPVL 102

Query: 96  RQRIVAILQQFQAVLVAPIVTDPLQTPHYIRPNTYIQYRVGIEVTW--VGRGVLNDMREV 155
           RQR+VA+ QQ +AVLVAP+V DPL     +    +    V  +V      R + +D+ EV
Sbjct: 103 RQRVVAVPQQPRAVLVAPVVEDPLHQDG-VAAAGHGGEHVAADVLHPRERRRLGDDVGEV 162

Query: 156 EVDAPNRRQRKD 166
            VD P+ R  +D
Sbjct: 163 VVDPPDVRVARD 173

[Close]

BLAST of CmaCh18G013430 vs. TrEMBL
Match: C4JBG2_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.1e-07
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 1


Query: 36  LEALKSSSLGQGVELLLGPFFASRVVSQHYDIDVNHSLGGKAAVWCNRKNAFCHDHLPML 95
           LE  ++ +L +  EL L P  A+ VV +H  +DV  +L     +  +R++A   D L + 
Sbjct: 26  LEPGEAGALCELAELALVPLLAAGVVREHDHVDVEDALRLGGGLRVDRQHALDDDDLAIF 85

Query: 96  RQRIVAILQQFQAVLVAPIVTDPLQTPHYIRPNTYIQYRVGIEVTWVGRGVLNDMREVEV 155
           RQR+VA+L+Q  AV VAP+V DPL        +        +      R + +D+R+VEV
Sbjct: 86  RQRVVAVLEQRGAVRVAPVVEDPLHEDGVAGGHGREHVPAHVAHAGERRRLGDDVRQVEV 145

Query: 156 D 157
           D
Sbjct: 146 D 146

[Close]

BLAST of CmaCh18G013430 vs. TrEMBL
Match: C4J6W8_MAIZE (Uncharacterized protein OS=Zea mays GN=Zm.160742 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.1e-07
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 1


Query: 36  LEALKSSSLGQGVELLLGPFFASRVVSQHYDIDVNHSLGGKAAVWCNRKNAFCHDHLPML 95
           LE  ++ +L +  EL L P  A+ VV +H  +DV  +L     +  +R++A   D L + 
Sbjct: 26  LEPGEAGALCELAELALVPLLAAGVVREHDHVDVEDALRLGGGLRVDRQHALDDDDLAIF 85

Query: 96  RQRIVAILQQFQAVLVAPIVTDPLQTPHYIRPNTYIQYRVGIEVTWVGRGVLNDMREVEV 155
           RQR+VA+L+Q  AV VAP+V DPL        +        +      R + +D+R+VEV
Sbjct: 86  RQRVVAVLEQRGAVRVAPVVEDPLHEDGVAGGHGREHVPAHVAHAGERRRLGDDVRQVEV 145

Query: 156 D 157
           D
Sbjct: 146 D 146

[Close]

BLAST of CmaCh18G013430 vs. TrEMBL
Match: C0PCA7_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.1e-07
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 1


Query: 36  LEALKSSSLGQGVELLLGPFFASRVVSQHYDIDVNHSLGGKAAVWCNRKNAFCHDHLPML 95
           LE  ++ +L +  EL L P  A+ VV +H  +DV  +L     +  +R++A   D L + 
Sbjct: 26  LEPGEAGALCELAELALVPLLAAGVVREHDHVDVEDALRLGGGLRVDRQHALDDDDLAIF 85

Query: 96  RQRIVAILQQFQAVLVAPIVTDPLQTPHYIRPNTYIQYRVGIEVTWVGRGVLNDMREVEV 155
           RQR+VA+L+Q  AV VAP+V DPL        +        +      R + +D+R+VEV
Sbjct: 86  RQRVVAVLEQRGAVRVAPVVEDPLHEDGVAGGHGREHVPAHVAHAGERRRLGDDVRQVEV 145

Query: 156 D 157
           D
Sbjct: 146 D 146

[Close]

BLAST of CmaCh18G013430 vs. NCBI nr
Match: gi|223975229|gb|ACN31802.1| (unknown [Zea mays])

HSP 1 Score: 63.2 bits (152), Expect = 5.9e-07
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 1


Query: 36  LEALKSSSLGQGVELLLGPFFASRVVSQHYDIDVNHSLGGKAAVWCNRKNAFCHDHLPML 95
           LE  ++ +L +  EL L P  A+ VV +H  +DV  +L     +  +R++A   D L + 
Sbjct: 26  LEPGEAGALCELAELALVPLLAAGVVREHDHVDVEDALRLGGGLRVDRQHALDDDDLAIF 85

Query: 96  RQRIVAILQQFQAVLVAPIVTDPLQTPHYIRPNTYIQYRVGIEVTWVGRGVLNDMREVEV 155
           RQR+VA+L+Q  AV VAP+V DPL        +        +      R + +D+R+VEV
Sbjct: 86  RQRVVAVLEQRGAVRVAPVVEDPLHEDGVAGGHGREHVPAHVAHAGERRRLGDDVRQVEV 145

Query: 156 D 157
           D
Sbjct: 146 D 146

[Close]

BLAST of CmaCh18G013430 vs. NCBI nr
Match: gi|238011766|gb|ACR36918.1| (unknown [Zea mays])

HSP 1 Score: 63.2 bits (152), Expect = 5.9e-07
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 1


Query: 36  LEALKSSSLGQGVELLLGPFFASRVVSQHYDIDVNHSLGGKAAVWCNRKNAFCHDHLPML 95
           LE  ++ +L +  EL L P  A+ VV +H  +DV  +L     +  +R++A   D L + 
Sbjct: 26  LEPGEAGALCELAELALVPLLAAGVVREHDHVDVEDALRLGGGLRVDRQHALDDDDLAIF 85

Query: 96  RQRIVAILQQFQAVLVAPIVTDPLQTPHYIRPNTYIQYRVGIEVTWVGRGVLNDMREVEV 155
           RQR+VA+L+Q  AV VAP+V DPL        +        +      R + +D+R+VEV
Sbjct: 86  RQRVVAVLEQRGAVRVAPVVEDPLHEDGVAGGHGREHVPAHVAHAGERRRLGDDVRQVEV 145

Query: 156 D 157
           D
Sbjct: 146 D 146

[Close]

BLAST of CmaCh18G013430 vs. NCBI nr
Match: gi|238014954|gb|ACR38512.1| (unknown [Zea mays])

HSP 1 Score: 63.2 bits (152), Expect = 5.9e-07
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 1


Query: 36  LEALKSSSLGQGVELLLGPFFASRVVSQHYDIDVNHSLGGKAAVWCNRKNAFCHDHLPML 95
           LE  ++ +L +  EL L P  A+ VV +H  +DV  +L     +  +R++A   D L + 
Sbjct: 26  LEPGEAGALCELAELALVPLLAAGVVREHDHVDVEDALRLGGGLRVDRQHALDDDDLAIF 85

Query: 96  RQRIVAILQQFQAVLVAPIVTDPLQTPHYIRPNTYIQYRVGIEVTWVGRGVLNDMREVEV 155
           RQR+VA+L+Q  AV VAP+V DPL        +        +      R + +D+R+VEV
Sbjct: 86  RQRVVAVLEQRGAVRVAPVVEDPLHEDGVAGGHGREHVPAHVAHAGERRRLGDDVRQVEV 145

Query: 156 D 157
           D
Sbjct: 146 D 146

The following BLAST results are available for this feature:

BLAST of CmaCh18G013430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh18G013430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0E0EI39_9ORYZ	2.1e-11	39.39	Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1	[more]
C4JBG2_MAIZE	4.1e-07	33.88	Uncharacterized protein OS=Zea mays PE=2 SV=1	[more]
C4J6W8_MAIZE	4.1e-07	33.88	Uncharacterized protein OS=Zea mays GN=Zm.160742 PE=2 SV=1	[more]
C0PCA7_MAIZE	4.1e-07	33.88	Uncharacterized protein OS=Zea mays PE=2 SV=1	[more]

BLAST of CmaCh18G013430 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh18G013430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|223975229\|gb\|ACN31802.1\|	5.9e-07	33.88	unknown [Zea mays]	[more]
gi\|238011766\|gb\|ACR36918.1\|	5.9e-07	33.88	unknown [Zea mays]	[more]
gi\|238014954\|gb\|ACR38512.1\|	5.9e-07	33.88	unknown [Zea mays]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G013430.1	CmaCh18G013430.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G013430	Silver-seed gourd	carcmaB0754
CmaCh18G013430	Silver-seed gourd	carcmaB1368
CmaCh18G013430	Cucumber (Chinese Long) v3	cmacucB0493
CmaCh18G013430	Cucurbita maxima (Rimu)	cmacmaB338
CmaCh18G013430	Cucurbita moschata (Rifu)	cmacmoB405
CmaCh18G013430	Cucurbita moschata (Rifu)	cmacmoB406
CmaCh18G013430	Wild cucumber (PI 183967)	cmacpiB418
CmaCh18G013430	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G013430	Cucurbita pepo (Zucchini)	cmacpeB425
CmaCh18G013430	Bottle gourd (USVL1VR-Ls)	cmalsiB393