CmaCh18G012700 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G012700
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	MYB transcription factor
Location	Cma_Chr18 : 9873783 .. 9874836 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTACCTGCCGCCGCACCCAGTACCTCGCTTTGACTCTTAAAAATCAATGCTAACAGACACGTGTCATATTTCTGTTGCTTGTACGTTTTGTACTAAACATACACCCGCCGCAGCCGATCATTTCAAAGTATCTCCACGGAAAATATCAATGGTACTGGCAACTGCAAACTGCCGTTCTCGAACCTCGTGCTCGGGCTAAACCTGGCTGTATATTCCGAATTGGATCCGTACAAATGGCTTTACCGTTCAACGCTGCTCCGACGTCGTCGAAGGAGGATCTTTCGAAGAGAGCTCGGAAACCTTACACCATCACCAAGTGCAGAGAGAGCTGGACTGAGCCTGAGCACGATAAGTTCCTCGAAGCTATTCAACTGTATAATCTTCTATTTCTTTTCCAGCTTCTCTGTTCTCTCTTCTGTTCGACTGGAGTTTCTTTGAATTTTTGTTAGTAAATAAGAGTTTCTTCGAATTCTCCGTTCTTGTTTTTCCTTATTTAAGGCTTCTGGATTCATGAGTGGAGGCATTGCGCTTGTTTTCTCGAAGTGATTTTGGAGTATTTGACTGTTCCTTCAGTTTACTTGCGTTTTCTCTTGATTACATGTTTTAGGTTTGATCGAGACTGGAAGAAGATTGAGGCGTTTGTTGGATCCAAGACTGTCATTCAGGTAATGTAAGACACTTGTCTCACGTTCCCCTTTTGTTTGTACGGATCTAATGAACAAATCTGGGAATGTTTTCAATCTTTCAATAGTGTTTCTAAGATTTCTATAGATAAGATCTGGAAATTGCAACTTTATTGCATAATTTAGAGTCGAGTTTAATGCTAAATGTATGAAAATTTAAAGATTATGAAGTAAATCTGTATGTCTTGTTCTGTTTCGTTAGAAACCTGTTGATCTTGAAGTGGTGTAAATAAGATGATGGTTTGTTACAGATACGTAGTCATGCCCAGAAGTACTTCCTGAAGGTTGAGAAGAGCGGGACAGGCGAACACTTGCCTCCTCCTCGACCTAAGAGGATGTTAAATAAAAGCTCTGCCTTATTTAGTTAG

mRNA sequence

CTTCTACCTGCCGCCGCACCCAGTACCTCGCTTTGACTCTTAAAAATCAATGCTAACAGACACGTGTCATATTTCTGTTGCTTGTACGTTTTGTACTAAACATACACCCGCCGCAGCCGATCATTTCAAAGTATCTCCACGGAAAATATCAATGGTACTGGCAACTGCAAACTGCCGTTCTCGAACCTCGTGCTCGGGCTAAACCTGGCTGTATATTCCGAATTGGATCCGTACAAATGGCTTTACCGTTCAACGCTGCTCCGACGTCGTCGAAGGAGGATCTTTCGAAGAGAGCTCGGAAACCTTACACCATCACCAAGTGCAGAGAGAGCTGGACTGAGCCTGAGCACGATAAGTTCCTCGAAGCTATTCAACTGTTTGATCGAGACTGGAAGAAGATTGAGGCGTTTGTTGGATCCAAGACTGTCATTCAGATACGTAGTCATGCCCAGAAGTACTTCCTGAAGGTTGAGAAGAGCGGGACAGGCGAACACTTGCCTCCTCCTCGACCTAAGAGGATGTTAAATAAAAGCTCTGCCTTATTTAGTTAG

Coding sequence (CDS)

ATGGCTTTACCGTTCAACGCTGCTCCGACGTCGTCGAAGGAGGATCTTTCGAAGAGAGCTCGGAAACCTTACACCATCACCAAGTGCAGAGAGAGCTGGACTGAGCCTGAGCACGATAAGTTCCTCGAAGCTATTCAACTGTTTGATCGAGACTGGAAGAAGATTGAGGCGTTTGTTGGATCCAAGACTGTCATTCAGATACGTAGTCATGCCCAGAAGTACTTCCTGAAGGTTGAGAAGAGCGGGACAGGCGAACACTTGCCTCCTCCTCGACCTAAGAGGATGTTAAATAAAAGCTCTGCCTTATTTAGTTAG

Protein sequence

MALPFNAAPTSSKEDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVEKSGTGEHLPPPRPKRMLNKSSALFS

Homology

[Close]

BLAST of CmaCh18G012700 vs. Swiss-Prot
Match: RVE6_ARATH (Protein REVEILLE 6 OS=Arabidopsis thaliana GN=RVE6 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 2.8e-40
Identity = 78/88 (88.64%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 7   AAPTSSKEDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQ 66
           A  +SS+EDLSK+ RKPYTITK RESWTEPEHDKFLEA+QLFDRDWKKIEAF+GSKTVIQ
Sbjct: 49  AMVSSSEEDLSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQ 108

Query: 67  IRSHAQKYFLKVEKSGTGEHLPPPRPKR 95
           IRSHAQKYFLKV+KSGTGEHLPPPRPKR
Sbjct: 109 IRSHAQKYFLKVQKSGTGEHLPPPRPKR 136

[Close]

BLAST of CmaCh18G012700 vs. Swiss-Prot
Match: RVE3_ARATH (Protein REVEILLE 3 OS=Arabidopsis thaliana GN=RVE3 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.6e-35
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 1


Query: 14  EDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQIRSHAQK 73
           ED +K+ RKPYTITK RE+WTE EHDKFLEA+ LFDRDWKKI+AFVGSKTVIQIRSHAQK
Sbjct: 45  EDPTKKVRKPYTITKSRENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQK 104

Query: 74  YFLKVEKSGTGEHLPPPRPKRMLN 98
           YFLKV+K+GT EHLPPPRPKR  N
Sbjct: 105 YFLKVQKNGTKEHLPPPRPKRKAN 128

[Close]

BLAST of CmaCh18G012700 vs. Swiss-Prot
Match: RVE8_ARATH (Protein REVEILLE 8 OS=Arabidopsis thaliana GN=RVE8 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 8.9e-34
Identity = 71/89 (79.78%), Postives = 77/89 (86.52%), Query Frame = 1


Query: 9   PTSSK---EDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVI 68
           PTS+    E  SK+ RKPYTITK RESWTE EHDKFLEA+QLFDRDWKKIE FVGSKTVI
Sbjct: 19  PTSTDAVAEGSSKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVI 78

Query: 69  QIRSHAQKYFLKVEKSGTGEHLPPPRPKR 95
           QIRSHAQKYFLKV+K+GT  H+PPPRPKR
Sbjct: 79  QIRSHAQKYFLKVQKNGTLAHVPPPRPKR 107

[Close]

BLAST of CmaCh18G012700 vs. Swiss-Prot
Match: RVE5_ARATH (Protein REVEILLE 5 OS=Arabidopsis thaliana GN=RVE5 PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.6e-33
Identity = 66/84 (78.57%), Postives = 73/84 (86.90%), Query Frame = 1


Query: 11  SSKEDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQIRSH 70
           S  ED + + RKPYTI K RE+WT+ EHDKFLEA+ LFDRDWKKIEAFVGSKTV+QIRSH
Sbjct: 40  SFSEDPTTKIRKPYTIKKSRENWTDQEHDKFLEALHLFDRDWKKIEAFVGSKTVVQIRSH 99

Query: 71  AQKYFLKVEKSGTGEHLPPPRPKR 95
           AQKYFLKV+KSG  EHLPPPRPKR
Sbjct: 100 AQKYFLKVQKSGANEHLPPPRPKR 123

[Close]

BLAST of CmaCh18G012700 vs. Swiss-Prot
Match: RVE4_ARATH (Protein REVEILLE 4 OS=Arabidopsis thaliana GN=RVE4 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-32
Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = 1


Query: 8   APTSSKEDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQI 67
           A T + E   K+ RK YTITK RESWTE EHDKFLEA+QLFDRDWKKIE FVGSKTVIQI
Sbjct: 26  ATTEAGEAPEKKVRKAYTITKSRESWTEGEHDKFLEALQLFDRDWKKIEDFVGSKTVIQI 85

Query: 68  RSHAQKYFLKVEKSGTGEHLPPPRPKR 95
           RSHAQKYFLKV+K+GT  H+PPPRPKR
Sbjct: 86  RSHAQKYFLKVQKNGTLAHVPPPRPKR 112

[Close]

BLAST of CmaCh18G012700 vs. TrEMBL
Match: A0A0A0L8T4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183960 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 8.6e-44
Identity = 88/94 (93.62%), Postives = 90/94 (95.74%), Query Frame = 1


Query: 1  MALPFNAAPTSSKEDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG 60
          MALPF    TSS++DLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG
Sbjct: 1  MALPFETVITSSRDDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG 60

Query: 61 SKTVIQIRSHAQKYFLKVEKSGTGEHLPPPRPKR 95
          SKTVIQIRSHAQKYFLKVEKSGTGEHLPPPRPKR
Sbjct: 61 SKTVIQIRSHAQKYFLKVEKSGTGEHLPPPRPKR 94

[Close]

BLAST of CmaCh18G012700 vs. TrEMBL
Match: R0GMQ9_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10026677mg PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 3.2e-38
Identity = 78/88 (88.64%), Postives = 83/88 (94.32%), Query Frame = 1


Query: 7   AAPTSSKEDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQ 66
           A  +SS EDLSK+ RKPYTITK RESWTEPEHDKFLEA+QLFDRDWKKIEAF+GSKTVIQ
Sbjct: 75  ATVSSSSEDLSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQ 134

Query: 67  IRSHAQKYFLKVEKSGTGEHLPPPRPKR 95
           IRSHAQKYFLKV+KSGTGEHLPPPRPKR
Sbjct: 135 IRSHAQKYFLKVQKSGTGEHLPPPRPKR 162

[Close]

BLAST of CmaCh18G012700 vs. TrEMBL
Match: V4LLA0_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014069mg PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 3.2e-38
Identity = 78/87 (89.66%), Postives = 82/87 (94.25%), Query Frame = 1


Query: 8   APTSSKEDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQI 67
           A  SS EDLSK+ RKPYTITK RESWTEPEHDKFLEA+QLFDRDWKKIEAF+GSKTVIQI
Sbjct: 50  ATVSSSEDLSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQI 109

Query: 68  RSHAQKYFLKVEKSGTGEHLPPPRPKR 95
           RSHAQKYFLKV+KSGTGEHLPPPRPKR
Sbjct: 110 RSHAQKYFLKVQKSGTGEHLPPPRPKR 136

[Close]

BLAST of CmaCh18G012700 vs. TrEMBL
Match: D7MS74_ARALL (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_684827 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 3.2e-38
Identity = 78/88 (88.64%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 7   AAPTSSKEDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQ 66
           A  +SS+EDLSK+ RKPYTITK RESWTEPEHDKFLEA+QLFDRDWKKIEAF+GSKTVIQ
Sbjct: 50  AMVSSSEEDLSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQ 109

Query: 67  IRSHAQKYFLKVEKSGTGEHLPPPRPKR 95
           IRSHAQKYFLKV+KSGTGEHLPPPRPKR
Sbjct: 110 IRSHAQKYFLKVQKSGTGEHLPPPRPKR 137

[Close]

BLAST of CmaCh18G012700 vs. TrEMBL
Match: A0A0D3B3T3_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 7.1e-38
Identity = 78/88 (88.64%), Postives = 82/88 (93.18%), Query Frame = 1


Query: 7   AAPTSSKEDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQ 66
           A   SS EDLSK+ RKPYTITK RESWTEPEHDKFLEA+QLFDRDWKKIEAF+GSKTVIQ
Sbjct: 62  AETVSSGEDLSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQ 121

Query: 67  IRSHAQKYFLKVEKSGTGEHLPPPRPKR 95
           IRSHAQKYFLKV+KSGTGEHLPPPRPKR
Sbjct: 122 IRSHAQKYFLKVQKSGTGEHLPPPRPKR 149

[Close]

BLAST of CmaCh18G012700 vs. TAIR10
Match: AT5G52660.2 (AT5G52660.2 Homeodomain-like superfamily protein)

HSP 1 Score: 165.6 bits (418), Expect = 1.6e-41
Identity = 78/88 (88.64%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 7   AAPTSSKEDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQ 66
           A  +SS+EDLSK+ RKPYTITK RESWTEPEHDKFLEA+QLFDRDWKKIEAF+GSKTVIQ
Sbjct: 49  AMVSSSEEDLSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQ 108

Query: 67  IRSHAQKYFLKVEKSGTGEHLPPPRPKR 95
           IRSHAQKYFLKV+KSGTGEHLPPPRPKR
Sbjct: 109 IRSHAQKYFLKVQKSGTGEHLPPPRPKR 136

[Close]

BLAST of CmaCh18G012700 vs. TAIR10
Match: AT1G01520.1 (AT1G01520.1 Homeodomain-like superfamily protein)

HSP 1 Score: 148.7 bits (374), Expect = 2.0e-36
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 1


Query: 14  EDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQIRSHAQK 73
           ED +K+ RKPYTITK RE+WTE EHDKFLEA+ LFDRDWKKI+AFVGSKTVIQIRSHAQK
Sbjct: 45  EDPTKKVRKPYTITKSRENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQK 104

Query: 74  YFLKVEKSGTGEHLPPPRPKRMLN 98
           YFLKV+K+GT EHLPPPRPKR  N
Sbjct: 105 YFLKVQKNGTKEHLPPPRPKRKAN 128

[Close]

BLAST of CmaCh18G012700 vs. TAIR10
Match: AT3G09600.1 (AT3G09600.1 Homeodomain-like superfamily protein)

HSP 1 Score: 144.1 bits (362), Expect = 5.0e-35
Identity = 71/89 (79.78%), Postives = 77/89 (86.52%), Query Frame = 1


Query: 9   PTSSK---EDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVI 68
           PTS+    E  SK+ RKPYTITK RESWTE EHDKFLEA+QLFDRDWKKIE FVGSKTVI
Sbjct: 19  PTSTDAVAEGSSKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVI 78

Query: 69  QIRSHAQKYFLKVEKSGTGEHLPPPRPKR 95
           QIRSHAQKYFLKV+K+GT  H+PPPRPKR
Sbjct: 79  QIRSHAQKYFLKVQKNGTLAHVPPPRPKR 107

[Close]

BLAST of CmaCh18G012700 vs. TAIR10
Match: AT4G01280.2 (AT4G01280.2 Homeodomain-like superfamily protein)

HSP 1 Score: 142.5 bits (358), Expect = 1.5e-34
Identity = 66/84 (78.57%), Postives = 73/84 (86.90%), Query Frame = 1


Query: 11  SSKEDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQIRSH 70
           S  ED + + RKPYTI K RE+WT+ EHDKFLEA+ LFDRDWKKIEAFVGSKTV+QIRSH
Sbjct: 40  SFSEDPTTKIRKPYTIKKSRENWTDQEHDKFLEALHLFDRDWKKIEAFVGSKTVVQIRSH 99

Query: 71  AQKYFLKVEKSGTGEHLPPPRPKR 95
           AQKYFLKV+KSG  EHLPPPRPKR
Sbjct: 100 AQKYFLKVQKSGANEHLPPPRPKR 123

[Close]

BLAST of CmaCh18G012700 vs. TAIR10
Match: AT5G02840.1 (AT5G02840.1 LHY/CCA1-like 1)

HSP 1 Score: 140.2 bits (352), Expect = 7.2e-34
Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = 1


Query: 8   APTSSKEDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQI 67
           A T + E   K+ RK YTITK RESWTE EHDKFLEA+QLFDRDWKKIE FVGSKTVIQI
Sbjct: 26  ATTEAGEAPEKKVRKAYTITKSRESWTEGEHDKFLEALQLFDRDWKKIEDFVGSKTVIQI 85

Query: 68  RSHAQKYFLKVEKSGTGEHLPPPRPKR 95
           RSHAQKYFLKV+K+GT  H+PPPRPKR
Sbjct: 86  RSHAQKYFLKVQKNGTLAHVPPPRPKR 112

[Close]

BLAST of CmaCh18G012700 vs. NCBI nr
Match: gi|659077583|ref|XP_008439277.1| (PREDICTED: protein REVEILLE 6-like isoform X2 [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 5.6e-44
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1


Query: 1   MALPFNAAPTSSKEDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG 60
           MALPF +  TSS++DLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG
Sbjct: 27  MALPFESVTTSSRDDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG 86

Query: 61  SKTVIQIRSHAQKYFLKVEKSGTGEHLPPPRPKR 95
           SKTVIQIRSHAQKYFLKVEKSGTGEHLPPPRPKR
Sbjct: 87  SKTVIQIRSHAQKYFLKVEKSGTGEHLPPPRPKR 120

[Close]

BLAST of CmaCh18G012700 vs. NCBI nr
Match: gi|659077581|ref|XP_008439276.1| (PREDICTED: protein REVEILLE 6-like isoform X1 [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 5.6e-44
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1


Query: 1   MALPFNAAPTSSKEDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG 60
           MALPF +  TSS++DLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG
Sbjct: 27  MALPFESVTTSSRDDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG 86

Query: 61  SKTVIQIRSHAQKYFLKVEKSGTGEHLPPPRPKR 95
           SKTVIQIRSHAQKYFLKVEKSGTGEHLPPPRPKR
Sbjct: 87  SKTVIQIRSHAQKYFLKVEKSGTGEHLPPPRPKR 120

[Close]

BLAST of CmaCh18G012700 vs. NCBI nr
Match: gi|659077591|ref|XP_008439281.1| (PREDICTED: protein REVEILLE 6-like isoform X6 [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 5.6e-44
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1


Query: 1   MALPFNAAPTSSKEDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG 60
           MALPF +  TSS++DLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG
Sbjct: 27  MALPFESVTTSSRDDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG 86

Query: 61  SKTVIQIRSHAQKYFLKVEKSGTGEHLPPPRPKR 95
           SKTVIQIRSHAQKYFLKVEKSGTGEHLPPPRPKR
Sbjct: 87  SKTVIQIRSHAQKYFLKVEKSGTGEHLPPPRPKR 120

[Close]

BLAST of CmaCh18G012700 vs. NCBI nr
Match: gi|659077589|ref|XP_008439280.1| (PREDICTED: protein REVEILLE 6-like isoform X5 [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 5.6e-44
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1


Query: 1   MALPFNAAPTSSKEDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG 60
           MALPF +  TSS++DLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG
Sbjct: 27  MALPFESVTTSSRDDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG 86

Query: 61  SKTVIQIRSHAQKYFLKVEKSGTGEHLPPPRPKR 95
           SKTVIQIRSHAQKYFLKVEKSGTGEHLPPPRPKR
Sbjct: 87  SKTVIQIRSHAQKYFLKVEKSGTGEHLPPPRPKR 120

[Close]

BLAST of CmaCh18G012700 vs. NCBI nr
Match: gi|659077587|ref|XP_008439279.1| (PREDICTED: protein REVEILLE 6-like isoform X4 [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 5.6e-44
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1


Query: 1   MALPFNAAPTSSKEDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG 60
           MALPF +  TSS++DLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG
Sbjct: 27  MALPFESVTTSSRDDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG 86

Query: 61  SKTVIQIRSHAQKYFLKVEKSGTGEHLPPPRPKR 95
           SKTVIQIRSHAQKYFLKVEKSGTGEHLPPPRPKR
Sbjct: 87  SKTVIQIRSHAQKYFLKVEKSGTGEHLPPPRPKR 120

The following BLAST results are available for this feature:

BLAST of CmaCh18G012700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RVE6_ARATH	2.8e-40	88.64	Protein REVEILLE 6 OS=Arabidopsis thaliana GN=RVE6 PE=2 SV=1	[more]
RVE3_ARATH	3.6e-35	82.14	Protein REVEILLE 3 OS=Arabidopsis thaliana GN=RVE3 PE=2 SV=1	[more]
RVE8_ARATH	8.9e-34	79.78	Protein REVEILLE 8 OS=Arabidopsis thaliana GN=RVE8 PE=2 SV=1	[more]
RVE5_ARATH	2.6e-33	78.57	Protein REVEILLE 5 OS=Arabidopsis thaliana GN=RVE5 PE=2 SV=1	[more]
RVE4_ARATH	1.3e-32	78.16	Protein REVEILLE 4 OS=Arabidopsis thaliana GN=RVE4 PE=1 SV=1	[more]

BLAST of CmaCh18G012700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8T4_CUCSA	8.6e-44	93.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183960 PE=4 SV=1	[more]
R0GMQ9_9BRAS	3.2e-38	88.64	Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10026677mg PE=4...	[more]
V4LLA0_EUTSA	3.2e-38	89.66	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014069mg PE=4 SV=1	[more]
D7MS74_ARALL	3.2e-38	88.64	Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_684827 PE=4 ...	[more]
A0A0D3B3T3_BRAOL	7.1e-38	88.64	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of CmaCh18G012700 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52660.2	1.6e-41	88.64	Homeodomain-like superfamily protein	[more]
AT1G01520.1	2.0e-36	82.14	Homeodomain-like superfamily protein	[more]
AT3G09600.1	5.0e-35	79.78	Homeodomain-like superfamily protein	[more]
AT4G01280.2	1.5e-34	78.57	Homeodomain-like superfamily protein	[more]
AT5G02840.1	7.2e-34	78.16	LHY/CCA1-like 1	[more]

BLAST of CmaCh18G012700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077583\|ref\|XP_008439277.1\|	5.6e-44	93.62	PREDICTED: protein REVEILLE 6-like isoform X2 [Cucumis melo]	[more]
gi\|659077581\|ref\|XP_008439276.1\|	5.6e-44	93.62	PREDICTED: protein REVEILLE 6-like isoform X1 [Cucumis melo]	[more]
gi\|659077591\|ref\|XP_008439281.1\|	5.6e-44	93.62	PREDICTED: protein REVEILLE 6-like isoform X6 [Cucumis melo]	[more]
gi\|659077589\|ref\|XP_008439280.1\|	5.6e-44	93.62	PREDICTED: protein REVEILLE 6-like isoform X5 [Cucumis melo]	[more]
gi\|659077587\|ref\|XP_008439279.1\|	5.6e-44	93.62	PREDICTED: protein REVEILLE 6-like isoform X4 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR006447	Myb_dom_plants
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G012700.1	CmaCh18G012700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 30..74 score: 3.3
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 29..77 score: 5.8
IPR006447	Myb domain, plants	TIGRFAMs	TIGR01557	TIGR01557	coord: 28..77 score: 3.7
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 26..76 score: 4.
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 24..80 score: 8.22
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 25..79 score: 13
None	No IPR available	PANTHER	PTHR12802	SWI/SNF COMPLEX-RELATED	coord: 11..94 score: 1.0
None	No IPR available	PANTHER	PTHR12802:SF48	SUBFAMILY NOT NAMED	coord: 11..94 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh18G012700	ClCG01G000910	Watermelon (Charleston Gray)	cmawcgB347

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G012700	Melon (DHL92) v3.6.1	cmamedB403
CmaCh18G012700	Melon (DHL92) v3.6.1	cmamedB432
CmaCh18G012700	Melon (DHL92) v3.6.1	cmamedB435
CmaCh18G012700	Melon (DHL92) v3.6.1	cmamedB438
CmaCh18G012700	Silver-seed gourd	carcmaB0996
CmaCh18G012700	Silver-seed gourd	carcmaB1032
CmaCh18G012700	Silver-seed gourd	carcmaB1368
CmaCh18G012700	Cucumber (Chinese Long) v3	cmacucB0487
CmaCh18G012700	Cucumber (Chinese Long) v3	cmacucB0490
CmaCh18G012700	Cucumber (Chinese Long) v3	cmacucB0500
CmaCh18G012700	Cucumber (Chinese Long) v3	cmacucB0504
CmaCh18G012700	Watermelon (97103) v2	cmawmbB400
CmaCh18G012700	Watermelon (97103) v2	cmawmbB424
CmaCh18G012700	Watermelon (97103) v2	cmawmbB429
CmaCh18G012700	Wax gourd	cmawgoB0502
CmaCh18G012700	Cucurbita maxima (Rimu)	cmacmaB253
CmaCh18G012700	Cucurbita maxima (Rimu)	cmacmaB306
CmaCh18G012700	Cucurbita maxima (Rimu)	cmacmaB338
CmaCh18G012700	Cucurbita maxima (Rimu)	cmacmaB396
CmaCh18G012700	Cucumber (Gy14) v1	cgycmaB0249
CmaCh18G012700	Cucurbita moschata (Rifu)	cmacmoB403
CmaCh18G012700	Cucurbita moschata (Rifu)	cmacmoB405
CmaCh18G012700	Cucurbita moschata (Rifu)	cmacmoB406
CmaCh18G012700	Cucurbita moschata (Rifu)	cmacmoB416
CmaCh18G012700	Wild cucumber (PI 183967)	cmacpiB413
CmaCh18G012700	Cucumber (Chinese Long) v2	cmacuB408
CmaCh18G012700	Melon (DHL92) v3.5.1	cmameB378
CmaCh18G012700	Melon (DHL92) v3.5.1	cmameB375
CmaCh18G012700	Watermelon (Charleston Gray)	cmawcgB365
CmaCh18G012700	Watermelon (97103) v1	cmawmB373
CmaCh18G012700	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G012700	Cucurbita pepo (Zucchini)	cmacpeB423
CmaCh18G012700	Cucurbita pepo (Zucchini)	cmacpeB425
CmaCh18G012700	Cucurbita pepo (Zucchini)	cmacpeB453
CmaCh18G012700	Bottle gourd (USVL1VR-Ls)	cmalsiB363
CmaCh18G012700	Bottle gourd (USVL1VR-Ls)	cmalsiB386
CmaCh18G012700	Bottle gourd (USVL1VR-Ls)	cmalsiB387
CmaCh18G012700	Cucumber (Gy14) v2	cgybcmaB355
CmaCh18G012700	Cucumber (Gy14) v2	cgybcmaB352
CmaCh18G012700	Cucumber (Gy14) v2	cgybcmaB628