CmaCh18G012200 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G012200
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	TraB family protein
Location	Cma_Chr18 : 9621064 .. 9623465 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATACGTTAGAAACTGGTGAGCCACACCAAAAACTAAAGTCCAACATGTTCTCCTTGAGTGGAGATGGTTTCTTGGGTGCTGTTGGTCGCAGCATAAACCTAGGTGAGGCTAACATTTTGTTTGTTTTTTTTTTGTTGGTTTTTGGCATATAAGCTGTCTAAAACTTGTCAATAATTCTTCAGGAGGCCAGACAGCTCTTGCTTTGCGCCTGCTTTTAGCTGCTTTTTCCTCCAAAATTTCTTCAGATGTCAACCGTCCTTTTGGCAGTGAGGTAACAGATCTTCAATTAACCAAGTAATGTTTAGACTAAGTTCATGTTCATGAAACTCTAATCAATCATGCAGTTTCGGGCTGCTCGTAAAGCATCTGAAGAAGTTGGTGCTCAAATAGTTTTAGGGGATCGGCCAATTGAAATAACTGTATGTGTTTCATTCCTGCAAGATGACACAATTTCTTGCTTTTCCAACTGCCACAAACCAGTAATGTTTTGCCCTCTCACTCGCTTCAATTTGATCTGTTGATTGTGCAGCTAGAAAGGGCATGGAACGCTTTGACATGGAACGAGAAGTTGAGCTTAGTAAGCTCAGTTATCCGTGGAATAACTTCACAATCTAATGTTTCTCAGAGCAATGATGAGGTTCTTTCCCACTTGAAATCTTTTACTCCACTTCTCAGCTTTAAATGATACATATTTTAGAAGTGATTCAGCCTTAATATATGGTTGCAAGATGGGAAGAAAACTTCTGTTCATAACTATGGCTTCCTAAGTTTTGAATAGTAGACCGGTTGAGCTAGGAACTGGAGTCGGATGCAAAAGAAATGCATAGACTGGCTTACATACCATATCAGGAACATCCGACATAGATTTAAACATGTCTTTCTAAGGAGTTGAATCTATGCTTTAAACATAGAGATCTGTATAATTAGGCAATTCCTGTTACTATTTTCTTTTTTCTCATTTGGTCGTTTTCACCGATGTTCTTGTTTCTTCTGTATGATCGCTTCTTTTACTTAGGATCTTGTTTATTAATGTGAGATCTCACATCGATTAGAGAGAGGAACAAGTGTTAGCGAAGACGCTGGACCCTGAAGGGGGTGGATTGTGAGATCCCACGTCGATTGGAGAGAGAAGTGAGTGTCAGCGAGAACGCTGGGCCCCGAAGGGGGTGGATCGTGAGATTTCACATCAGTTGGAGAGGGGAACGAAGCATTCTTTACAAGGGTGTTGAAATCTCTCCCCTCCCTAACGCGTTTTAAAAGCCTTGAGGAGAAACCCGAAAGGGAAAACCCAAAGATGACGATATCTATTAGCTGTGTGCTTGAGTTGTTACAAATGGTATCAGAGTCAGACACCGGGCGATGTGCCAACGAGGACGCTGGTTCTCGAAGAGGGGTGAATTGTGAGATCCCACATCGATTGGAGAGAGGAATGAAACATTCTTTATAAGACTGTTGAAACTTCTCCCTAGCAAACCGGTTTTAGAAACCTTGAGGGGAAAGTCTAAAGAGGACAATATCTATTAGCATTGGGCTTGGGCTGTTATAAATGGTATCAGAGCCGGACACCAGGCGGTATGCTAAGCGAGGACATTGAGCCCTGAAGGGAGGTGGATTGTGAGATCCCACATCGATTGGATAGGGAAATGAAGTATTCTTTATAAGGGTGTTGAAACCTCTCTCTAGCAGACACATGAACCATTACAATTAACATCACAAAAACTATAAGCATACATCCTTCTTTTTCTTGAAGTTCGAATCTAGGTGCATGAATCATCATATCCTTCGTTTTGTGAATGTGCTTTTCAGGAAGCAGGTAGAGATGGGAGTTCCTTGCAGCTGTATGAGCAGCTCAGTTTTTCATATCCATCTCTTCTTCAACCTCTTATTCATGAACGAGACACTGTAAGTATAATCACATAATGCATTTGGCAGCTCTTACTTCTTACCTCTGTAAAGTTGTTAATAGCTGCATTTTCAGTACATTGCATGGTCTCTAAAGCGAAGCAAGGCGGTGAACAAGAGTAAAAGGGTGGTGGGGGTGATTGGAAGAGGCCATATGAACGGCGTCATCTATGCCATCATATCAGATCAAGGAAACTTGCGATTTCGAGACGTTGCAGGTAAGAGAGCTGGGGAAACCTCCAATGGCTTTGTTAGCAGTCTGTTGCAGAGCTTGGTTAGAGACACTATCATTGGTGTTCTCTTCTGGGTTTTATATGAACAATTGAAACAACTACATTTAGTGCCTTAGCTGATCATCTTTCCAAACCATACCTTTGTAGAAAATCAATCCAAAAGTATACCATTCAAAACTTACATGTAAAGAGATGATTTGATCCTTATGTGTATTAGTCCATTTTTCAATATATCATTTGAAAATTGATCTAAATCCATCCCC

mRNA sequence

ATGTATACGTTAGAAACTGGTGAGCCACACCAAAAACTAAAGTCCAACATGTTCTCCTTGAGTGGAGATGGTTTCTTGGGTGCTGTTGGTCGCAGCATAAACCTAGGAGGCCAGACAGCTCTTGCTTTGCGCCTGCTTTTAGCTGCTTTTTCCTCCAAAATTTCTTCAGATGTCAACCGTCCTTTTGGCAGTGAGTTTCGGGCTGCTCGTAAAGCATCTGAAGAAGTTGGTGCTCAAATAGTTTTAGGGGATCGGCCAATTGAAATAACTCTAGAAAGGGCATGGAACGCTTTGACATGGAACGAGAAGTTGAGCTTAGTAAGCTCAGTTATCCGTGGAATAACTTCACAATCTAATGTTTCTCAGAGCAATGATGAGGAAGCAGGTAGAGATGGGAGTTCCTTGCAGCTGTATGAGCAGCTCAGTTTTTCATATCCATCTCTTCTTCAACCTCTTATTCATGAACGAGACACTTACATTGCATGGTCTCTAAAGCGAAGCAAGGCGGTGAACAAGAGTAAAAGGGTGGTGGGGGTGATTGGAAGAGGCCATATGAACGGCGTCATCTATGCCATCATATCAGATCAAGGAAACTTGCGATTTCGAGACGTTGCAGGTAAGAGAGCTGGGGAAACCTCCAATGGCTTTGTTAGCAGTCTGTTGCAGAGCTTGGTTAGAGACACTATCATTGGTGTTCTCTTCTGGGTTTTATATGAACAATTGAAACAACTACATTTAGTGCCTTAGCTGATCATCTTTCCAAACCATACCTTTGTAGAAAATCAATCCAAAAGTATACCATTCAAAACTTACATGTAAAGAGATGATTTGATCCTTATGTGTATTAGTCCATTTTTCAATATATCATTTGAAAATTGATCTAAATCCATCCCC

Coding sequence (CDS)

ATGTATACGTTAGAAACTGGTGAGCCACACCAAAAACTAAAGTCCAACATGTTCTCCTTGAGTGGAGATGGTTTCTTGGGTGCTGTTGGTCGCAGCATAAACCTAGGAGGCCAGACAGCTCTTGCTTTGCGCCTGCTTTTAGCTGCTTTTTCCTCCAAAATTTCTTCAGATGTCAACCGTCCTTTTGGCAGTGAGTTTCGGGCTGCTCGTAAAGCATCTGAAGAAGTTGGTGCTCAAATAGTTTTAGGGGATCGGCCAATTGAAATAACTCTAGAAAGGGCATGGAACGCTTTGACATGGAACGAGAAGTTGAGCTTAGTAAGCTCAGTTATCCGTGGAATAACTTCACAATCTAATGTTTCTCAGAGCAATGATGAGGAAGCAGGTAGAGATGGGAGTTCCTTGCAGCTGTATGAGCAGCTCAGTTTTTCATATCCATCTCTTCTTCAACCTCTTATTCATGAACGAGACACTTACATTGCATGGTCTCTAAAGCGAAGCAAGGCGGTGAACAAGAGTAAAAGGGTGGTGGGGGTGATTGGAAGAGGCCATATGAACGGCGTCATCTATGCCATCATATCAGATCAAGGAAACTTGCGATTTCGAGACGTTGCAGGTAAGAGAGCTGGGGAAACCTCCAATGGCTTTGTTAGCAGTCTGTTGCAGAGCTTGGTTAGAGACACTATCATTGGTGTTCTCTTCTGGGTTTTATATGAACAATTGAAACAACTACATTTAGTGCCTTAG

Protein sequence

MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNRPFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNVSQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVIGRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQLKQLHLVP

Homology

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BLAST of CmaCh18G012200 vs. Swiss-Prot
Match: TRABD_MOUSE (TraB domain-containing protein OS=Mus musculus GN=Trabd PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.9e-08
Identity = 48/173 (27.75%), Postives = 88/173 (50.87%), Query Frame = 1


Query: 31  RSINLGGQTALALRLLLAAFSSKISSDVNRPFGSEFRAARKASEEVG-AQIVLGDRPIEI 90
           +++   G  +  +++LL   S+ I+  +    G EFR A K + +V   +  LGDRPI +
Sbjct: 135 QAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPV 194

Query: 91  TLERAWNALTWNEKLSLVSSVIRGITSQSNVSQSNDEEAGRDGSSL-QLYEQLSFSYPSL 150
           T +RA  AL++ +K+ L      G+   S+    +D E  +    L Q+  ++   +P L
Sbjct: 195 TFKRAIAALSFWQKVKLA----WGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDL 254

Query: 151 LQPLIHERDTYIAWSLKRS-------KAVNKSKR------VVGVIGRGHMNGV 189
            + ++ ERD Y+ + L+++       +A +   R      VVGV+G GH+ G+
Sbjct: 255 HRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGI 303

[Close]

BLAST of CmaCh18G012200 vs. Swiss-Prot
Match: TRABD_HUMAN (TraB domain-containing protein OS=Homo sapiens GN=TRABD PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.0e-08
Identity = 48/173 (27.75%), Postives = 88/173 (50.87%), Query Frame = 1


Query: 31  RSINLGGQTALALRLLLAAFSSKISSDVNRPFGSEFRAARKASEEVG-AQIVLGDRPIEI 90
           +++   G  +  +++LL   S+ I+  +    G EFR A K + +V   +  LGDRPI +
Sbjct: 136 QAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPV 195

Query: 91  TLERAWNALTWNEKLSLVSSVIRGITSQSNVSQSNDEEAGRDGSSL-QLYEQLSFSYPSL 150
           T +RA  AL++ +K+ L      G+   S+    +D E  +    L Q+  ++   +P L
Sbjct: 196 TFKRAIAALSFWQKVRLA----WGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDL 255

Query: 151 LQPLIHERDTYIAWSLKRS-------KAVNKSKR------VVGVIGRGHMNGV 189
            + ++ ERD Y+ + L+++       +A +   R      VVGV+G GH+ G+
Sbjct: 256 HRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGI 304

[Close]

BLAST of CmaCh18G012200 vs. Swiss-Prot
Match: TRABD_BOVIN (TraB domain-containing protein OS=Bos taurus GN=TRABD PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-07
Identity = 49/173 (28.32%), Postives = 86/173 (49.71%), Query Frame = 1


Query: 31  RSINLGGQTALALRLLLAAFSSKISSDVNRPFGSEFRAARKASEEVG-AQIVLGDRPIEI 90
           ++I   G  +  +++LL   S+ I+  +    G EFR A K +  V   +  LGDRPI +
Sbjct: 136 QAIRQNGVASGLMQMLLLKVSAHITEQLGVAPGGEFREAFKEASRVPFCKFHLGDRPIPV 195

Query: 91  TLERAWNALTWNEKLSLVSSVIRGITSQSNVSQSNDEEAGRDGSSL-QLYEQLSFSYPSL 150
           T +RA  AL+  +K+ L      G+   S+    +D E  +    L Q+  ++   +P L
Sbjct: 196 TFKRAIAALSLWQKVKLA----WGLCFLSDPISKDDVERCKQKDLLEQMMAEMVGEFPDL 255

Query: 151 LQPLIHERDTYIAWSLKRS-------KAVNKSKR------VVGVIGRGHMNGV 189
            + ++ ERD Y+ + L+++       +A +   R      VVGV+G GH+ G+
Sbjct: 256 HRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGI 304

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BLAST of CmaCh18G012200 vs. TrEMBL
Match: A0A0A0L5T2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180280 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 3.4e-115
Identity = 219/249 (87.95%), Postives = 233/249 (93.57%), Query Frame = 1


Query: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60
           MYTL+TGEP QKLKSNMFSLSGDGFLGAV RSINLGGQTALALRLLLA FSSKISSDVNR
Sbjct: 36  MYTLDTGEPDQKLKSNMFSLSGDGFLGAVVRSINLGGQTALALRLLLAVFSSKISSDVNR 95

Query: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120
           PFG EFRAARKASEEVGAQIVLGDRPIEITLERAWNAL W EKLSLVSSVIRGITS+S+ 
Sbjct: 96  PFGDEFRAARKASEEVGAQIVLGDRPIEITLERAWNALIWTEKLSLVSSVIRGITSESDF 155

Query: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180
           SQ+ DEE+  +GSSLQLYE+L FSYPSLLQPLIHERDTY+AWSLKRSKAVNKSKRVVGVI
Sbjct: 156 SQNIDEESDGNGSSLQLYEKLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVI 215

Query: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGE-TSNGFVSSLLQSLVRDTIIGVLFWVLYE 240
           GRGHMNGVIYAI SDQGNLRFRD+AGK+AGE  SNGFVSSLL+ LVRDTIIGV+ WVLYE
Sbjct: 216 GRGHMNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKDLVRDTIIGVIVWVLYE 275

Query: 241 QLKQLHLVP 249
           QLKQLH++P
Sbjct: 276 QLKQLHIIP 284

[Close]

BLAST of CmaCh18G012200 vs. TrEMBL
Match: B9I4F6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13890g PE=4 SV=2)

HSP 1 Score: 362.5 bits (929), Expect = 4.2e-97
Identity = 185/244 (75.82%), Postives = 212/244 (86.89%), Query Frame = 1


Query: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60
           MY  + GE  Q+L+S+MFSLSG GF GAVGRSINLGGQTALALRLLLA FSSKISSDVNR
Sbjct: 132 MYISDEGEVGQQLRSSMFSLSGTGFFGAVGRSINLGGQTALALRLLLALFSSKISSDVNR 191

Query: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120
           PFG EFRAARK +EE+GAQIVLGDRPIEITLERAWN+L W EKLSLV +V+RGITS S++
Sbjct: 192 PFGDEFRAARKVAEEIGAQIVLGDRPIEITLERAWNSLKWREKLSLVIAVVRGITSSSDI 251

Query: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180
           S++N + +  D  + QLYEQLSFSYPSLLQPLIHERDTY+AWSLKRSKAVN  KRVVGVI
Sbjct: 252 SKNNFKASSTDDRTFQLYEQLSFSYPSLLQPLIHERDTYLAWSLKRSKAVNNGKRVVGVI 311

Query: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKRAG--ETSNGFVSSLLQSLVRDTIIGVLFWVLY 240
           G+GHMNGVIYA+ISDQGNLRFRD+AG+R+   + SNGFV+ L++SLV DT IG+L W LY
Sbjct: 312 GKGHMNGVIYALISDQGNLRFRDLAGRRSSGDDGSNGFVAGLVKSLVIDTAIGILLWQLY 371

Query: 241 EQLK 243
           EQLK
Sbjct: 372 EQLK 375

[Close]

BLAST of CmaCh18G012200 vs. TrEMBL
Match: D7TMX1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0100g00410 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 5.5e-97
Identity = 186/243 (76.54%), Postives = 214/243 (88.07%), Query Frame = 1


Query: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60
           MYT   GE +Q+L+S+MFSLSG GF GA+GRSINLGGQTALALRLLLA FSSKISSDVNR
Sbjct: 136 MYTSNHGELNQQLRSSMFSLSGTGFFGAIGRSINLGGQTALALRLLLAVFSSKISSDVNR 195

Query: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120
           PFG EFRAARKASE+VGAQIVLGDRPIEITLERAWN+L WNEKLSLV SVIRGITS S +
Sbjct: 196 PFGDEFRAARKASEKVGAQIVLGDRPIEITLERAWNSLEWNEKLSLVISVIRGITS-SEL 255

Query: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180
           S +  +E   D S+ QLY+QLS +YPSLLQPLIHERDTY+AWSLKRSKAVN  KRVVGVI
Sbjct: 256 STNEMKELSTDDSTFQLYDQLSVAYPSLLQPLIHERDTYLAWSLKRSKAVNGGKRVVGVI 315

Query: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKR-AGETSNGFVSSLLQSLVRDTIIGVLFWVLYE 240
           G+GHMNGVIYA++SDQGNLRFRD+ GKR +G+ +NG+V SLL++LVRDT+IG+L W L+E
Sbjct: 316 GKGHMNGVIYALVSDQGNLRFRDLVGKRSSGDGANGWVDSLLKNLVRDTVIGILLWALFE 375

Query: 241 QLK 243
           Q+K
Sbjct: 376 QIK 377

[Close]

BLAST of CmaCh18G012200 vs. TrEMBL
Match: V4RLJ8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005112mg PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 7.2e-97
Identity = 185/243 (76.13%), Postives = 214/243 (88.07%), Query Frame = 1


Query: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60
           MYT   GE  Q+L+SNMFSLSG GF GAVGRSI+LGGQTALALRLLLA FSSKISSDVNR
Sbjct: 152 MYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNR 211

Query: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120
           PFG EFRAARK +EEVGAQIVLGDRPIEITLERAWN+L WNEKL+L+ +VIRGIT  S++
Sbjct: 212 PFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITLPSDM 271

Query: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180
           S  N +E   D S+ QLY++LSFS PSLL PLIHERDTY+AWSLKRSKAVN SK+VVGVI
Sbjct: 272 SLDNLKEPSPDDSTFQLYKKLSFSCPSLLLPLIHERDTYLAWSLKRSKAVNNSKKVVGVI 331

Query: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKR-AGETSNGFVSSLLQSLVRDTIIGVLFWVLYE 240
           G+GHMNGVIYA++SDQGNLRFRD+AGKR +G+ SNG+++SLL+SLVRDT+IG+L W LYE
Sbjct: 332 GKGHMNGVIYALVSDQGNLRFRDLAGKRSSGDGSNGWIASLLKSLVRDTVIGILLWALYE 391

Query: 241 QLK 243
           Q+K
Sbjct: 392 QVK 394

[Close]

BLAST of CmaCh18G012200 vs. TrEMBL
Match: B9R9G9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1497430 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 7.2e-97
Identity = 185/243 (76.13%), Postives = 209/243 (86.01%), Query Frame = 1


Query: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60
           MYT   GE +Q+L+SNMFSLSG+GF GAVGRSINLGGQTALALRLLLA FSSKIS+DVNR
Sbjct: 145 MYTSNEGEDNQQLRSNMFSLSGNGFFGAVGRSINLGGQTALALRLLLALFSSKISNDVNR 204

Query: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120
           PFG EFRAARK SEE+GAQIVLGDRPIEITLERAWNAL W EKLSLVSSV+RGITS S+ 
Sbjct: 205 PFGDEFRAARKVSEEIGAQIVLGDRPIEITLERAWNALKWKEKLSLVSSVVRGITSSSHT 264

Query: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180
           S+ + +    D  +  LYE+LSFSYPSLL PLIHERDTY+AWSLKRSKAVN SKRVVGVI
Sbjct: 265 SKKDFKVPDTDDDTFLLYEKLSFSYPSLLPPLIHERDTYLAWSLKRSKAVNNSKRVVGVI 324

Query: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKR-AGETSNGFVSSLLQSLVRDTIIGVLFWVLYE 240
           G+GHMNGVIYA++SD GNLRFRD+ G+R +G  S G V  LL+SLVRDT+IGV+ WVLYE
Sbjct: 325 GKGHMNGVIYALVSDLGNLRFRDLVGQRQSGSGSKGIVDELLKSLVRDTVIGVVLWVLYE 384

Query: 241 QLK 243
           Q+K
Sbjct: 385 QIK 387

[Close]

BLAST of CmaCh18G012200 vs. TAIR10
Match: AT5G52030.2 (AT5G52030.2 TraB family protein)

HSP 1 Score: 318.5 bits (815), Expect = 3.5e-87
Identity = 168/249 (67.47%), Postives = 196/249 (78.71%), Query Frame = 1


Query: 1   MYTLETG-EPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVN 60
           MYT   G E  Q LKS   SL+G GFLGAVGRS++LGGQTALALRLLLA FSSK+SS  +
Sbjct: 145 MYTSSVGGEVDQNLKSGELSLTGTGFLGAVGRSLDLGGQTALALRLLLAVFSSKLSSVAD 204

Query: 61  RPFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSN 120
           RPFG EFRAARKASEEVGAQ+VLGDRPIEITL+RAWN+L W EK +LV +V R ITS S 
Sbjct: 205 RPFGDEFRAARKASEEVGAQLVLGDRPIEITLQRAWNSLKWGEKFNLVMAVTRVITSSSG 264

Query: 121 VS--QSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVV 180
           +S  +  ++E   +  SLQLYE+LSFSYP+LL PLIHERDTY+AWSLKRSKAVN  K VV
Sbjct: 265 ISAAELKEQETDENSGSLQLYERLSFSYPALLMPLIHERDTYLAWSLKRSKAVNGCKTVV 324

Query: 181 GVIGRGHMNGVIYAIISDQGNLRFRDVAGK------RAGETSNGFVSSLLQSLVRDTIIG 240
           GVIG+GHMNGVIYA++SD G+LRFRD+ G+        G TSNG++  +L+S VRDTIIG
Sbjct: 325 GVIGKGHMNGVIYALVSDSGDLRFRDLVGRGDSYNGGTGTTSNGWIQKVLKSFVRDTIIG 384

[Close]

BLAST of CmaCh18G012200 vs. TAIR10
Match: AT2G32340.1 (AT2G32340.1 TraB family protein)

HSP 1 Score: 79.3 bits (194), Expect = 3.6e-15
Identity = 45/129 (34.88%), Postives = 76/129 (58.91%), Query Frame = 1


Query: 63  GSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNVSQ 122
           G+EFR   + + + G ++ LGDR ++ITL+R W  +    K+ LV S++       N  +
Sbjct: 186 GAEFRVGFEEANKYGGRVFLGDRSVQITLQRTWGKMPLWHKIKLVYSIVSQAVFLPNPKE 245

Query: 123 SND--EEAGRDGSSLQL-YEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGV 182
                ++ G DG  L L  +++S  +P+L++ L+HERD Y+A+ L R  + + S  VV V
Sbjct: 246 LEKMLKDLG-DGDMLTLAIQEMSTEFPTLMETLVHERDKYMAYQLLRIASEHSS--VVAV 305

Query: 183 IGRGHMNGV 189
           +GRGH+ G+
Sbjct: 306 VGRGHLQGI 311

[Close]

BLAST of CmaCh18G012200 vs. TAIR10
Match: AT1G05270.1 (AT1G05270.1 TraB family protein)

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-14
Identity = 46/146 (31.51%), Postives = 82/146 (56.16%), Query Frame = 1


Query: 45  LLLAAFSSKISSDVNRPFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKL 104
           +L   F +KI+S +    G+EFR A + + + G +++LGDRP++ITL+R W  +    K+
Sbjct: 177 ILYGWFLAKIASHLEVFPGAEFRVAYEEAIKYGGKVILGDRPVQITLKRTWAKMPLWHKV 236

Query: 105 SLVSSVIRGITSQSNVSQSNDEEAGRDGSSL--QLYEQLSFSYPSLLQPLIHERDTYIAW 164
             + S++          +        D   +   + +++S  +P+L+  ++HERD Y+A 
Sbjct: 237 KFLYSILFQAVFLPGAEELEKMLKDMDNVDMVTLVIQEMSKEFPTLMDTIVHERDQYMAS 296

Query: 165 SLKRSKAVNKSKRVVGVIGRGHMNGV 189
           SL R  + + S  VV VIG+GH+NG+
Sbjct: 297 SLLRVASDHSS--VVAVIGKGHINGI 320

[Close]

BLAST of CmaCh18G012200 vs. NCBI nr
Match: gi|659077362|ref|XP_008439166.1| (PREDICTED: traB domain-containing protein isoform X1 [Cucumis melo])

HSP 1 Score: 430.3 bits (1105), Expect = 2.4e-117
Identity = 223/249 (89.56%), Postives = 236/249 (94.78%), Query Frame = 1


Query: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60
           MYTL+TGEP QKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLA FSSKISSDVNR
Sbjct: 132 MYTLDTGEPDQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAVFSSKISSDVNR 191

Query: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120
           PFG EFRAARKASEEVGAQIVLGDRPIEITLERAWNALTW EKLSLVSSVIRGITS S+ 
Sbjct: 192 PFGDEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWTEKLSLVSSVIRGITSGSDF 251

Query: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180
           SQ+ DEE+  +GSSLQLYE+LSFSYPSLLQPLIHERDTY+AWSLKRSKAVNKSKRVVGVI
Sbjct: 252 SQNIDEESDGNGSSLQLYEKLSFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVI 311

Query: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGE-TSNGFVSSLLQSLVRDTIIGVLFWVLYE 240
           GRGHMNGVIYAI SDQGNLRFRD+AGK+AGE  SNGFVSSLL+SLVRDTIIGV+ WVLYE
Sbjct: 312 GRGHMNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYE 371

Query: 241 QLKQLHLVP 249
           QLKQLH++P
Sbjct: 372 QLKQLHIIP 380

[Close]

BLAST of CmaCh18G012200 vs. NCBI nr
Match: gi|659077364|ref|XP_008439167.1| (PREDICTED: traB domain-containing protein isoform X2 [Cucumis melo])

HSP 1 Score: 430.3 bits (1105), Expect = 2.4e-117
Identity = 223/249 (89.56%), Postives = 236/249 (94.78%), Query Frame = 1


Query: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60
           MYTL+TGEP QKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLA FSSKISSDVNR
Sbjct: 1   MYTLDTGEPDQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAVFSSKISSDVNR 60

Query: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120
           PFG EFRAARKASEEVGAQIVLGDRPIEITLERAWNALTW EKLSLVSSVIRGITS S+ 
Sbjct: 61  PFGDEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWTEKLSLVSSVIRGITSGSDF 120

Query: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180
           SQ+ DEE+  +GSSLQLYE+LSFSYPSLLQPLIHERDTY+AWSLKRSKAVNKSKRVVGVI
Sbjct: 121 SQNIDEESDGNGSSLQLYEKLSFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVI 180

Query: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGE-TSNGFVSSLLQSLVRDTIIGVLFWVLYE 240
           GRGHMNGVIYAI SDQGNLRFRD+AGK+AGE  SNGFVSSLL+SLVRDTIIGV+ WVLYE
Sbjct: 181 GRGHMNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYE 240

Query: 241 QLKQLHLVP 249
           QLKQLH++P
Sbjct: 241 QLKQLHIIP 249

[Close]

BLAST of CmaCh18G012200 vs. NCBI nr
Match: gi|449446067|ref|XP_004140793.1| (PREDICTED: traB domain-containing protein isoform X1 [Cucumis sativus])

HSP 1 Score: 422.5 bits (1085), Expect = 4.9e-115
Identity = 219/249 (87.95%), Postives = 233/249 (93.57%), Query Frame = 1


Query: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60
           MYTL+TGEP QKLKSNMFSLSGDGFLGAV RSINLGGQTALALRLLLA FSSKISSDVNR
Sbjct: 154 MYTLDTGEPDQKLKSNMFSLSGDGFLGAVVRSINLGGQTALALRLLLAVFSSKISSDVNR 213

Query: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120
           PFG EFRAARKASEEVGAQIVLGDRPIEITLERAWNAL W EKLSLVSSVIRGITS+S+ 
Sbjct: 214 PFGDEFRAARKASEEVGAQIVLGDRPIEITLERAWNALIWTEKLSLVSSVIRGITSESDF 273

Query: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180
           SQ+ DEE+  +GSSLQLYE+L FSYPSLLQPLIHERDTY+AWSLKRSKAVNKSKRVVGVI
Sbjct: 274 SQNIDEESDGNGSSLQLYEKLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVI 333

Query: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGE-TSNGFVSSLLQSLVRDTIIGVLFWVLYE 240
           GRGHMNGVIYAI SDQGNLRFRD+AGK+AGE  SNGFVSSLL+ LVRDTIIGV+ WVLYE
Sbjct: 334 GRGHMNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKDLVRDTIIGVIVWVLYE 393

Query: 241 QLKQLHLVP 249
           QLKQLH++P
Sbjct: 394 QLKQLHIIP 402

[Close]

BLAST of CmaCh18G012200 vs. NCBI nr
Match: gi|778679467|ref|XP_011651134.1| (PREDICTED: traB domain-containing protein isoform X2 [Cucumis sativus])

HSP 1 Score: 422.5 bits (1085), Expect = 4.9e-115
Identity = 219/249 (87.95%), Postives = 233/249 (93.57%), Query Frame = 1


Query: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60
           MYTL+TGEP QKLKSNMFSLSGDGFLGAV RSINLGGQTALALRLLLA FSSKISSDVNR
Sbjct: 1   MYTLDTGEPDQKLKSNMFSLSGDGFLGAVVRSINLGGQTALALRLLLAVFSSKISSDVNR 60

Query: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120
           PFG EFRAARKASEEVGAQIVLGDRPIEITLERAWNAL W EKLSLVSSVIRGITS+S+ 
Sbjct: 61  PFGDEFRAARKASEEVGAQIVLGDRPIEITLERAWNALIWTEKLSLVSSVIRGITSESDF 120

Query: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180
           SQ+ DEE+  +GSSLQLYE+L FSYPSLLQPLIHERDTY+AWSLKRSKAVNKSKRVVGVI
Sbjct: 121 SQNIDEESDGNGSSLQLYEKLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVI 180

Query: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGE-TSNGFVSSLLQSLVRDTIIGVLFWVLYE 240
           GRGHMNGVIYAI SDQGNLRFRD+AGK+AGE  SNGFVSSLL+ LVRDTIIGV+ WVLYE
Sbjct: 181 GRGHMNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKDLVRDTIIGVIVWVLYE 240

Query: 241 QLKQLHLVP 249
           QLKQLH++P
Sbjct: 241 QLKQLHIIP 249

[Close]

BLAST of CmaCh18G012200 vs. NCBI nr
Match: gi|700202207|gb|KGN57340.1| (hypothetical protein Csa_3G180280 [Cucumis sativus])

HSP 1 Score: 422.5 bits (1085), Expect = 4.9e-115
Identity = 219/249 (87.95%), Postives = 233/249 (93.57%), Query Frame = 1


Query: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60
           MYTL+TGEP QKLKSNMFSLSGDGFLGAV RSINLGGQTALALRLLLA FSSKISSDVNR
Sbjct: 36  MYTLDTGEPDQKLKSNMFSLSGDGFLGAVVRSINLGGQTALALRLLLAVFSSKISSDVNR 95

Query: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120
           PFG EFRAARKASEEVGAQIVLGDRPIEITLERAWNAL W EKLSLVSSVIRGITS+S+ 
Sbjct: 96  PFGDEFRAARKASEEVGAQIVLGDRPIEITLERAWNALIWTEKLSLVSSVIRGITSESDF 155

Query: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180
           SQ+ DEE+  +GSSLQLYE+L FSYPSLLQPLIHERDTY+AWSLKRSKAVNKSKRVVGVI
Sbjct: 156 SQNIDEESDGNGSSLQLYEKLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVI 215

Query: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGE-TSNGFVSSLLQSLVRDTIIGVLFWVLYE 240
           GRGHMNGVIYAI SDQGNLRFRD+AGK+AGE  SNGFVSSLL+ LVRDTIIGV+ WVLYE
Sbjct: 216 GRGHMNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKDLVRDTIIGVIVWVLYE 275

Query: 241 QLKQLHLVP 249
           QLKQLH++P
Sbjct: 276 QLKQLHIIP 284

The following BLAST results are available for this feature:

BLAST of CmaCh18G012200 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRABD_MOUSE	6.9e-08	27.75	TraB domain-containing protein OS=Mus musculus GN=Trabd PE=1 SV=1	[more]
TRABD_HUMAN	9.0e-08	27.75	TraB domain-containing protein OS=Homo sapiens GN=TRABD PE=1 SV=1	[more]
TRABD_BOVIN	2.0e-07	28.32	TraB domain-containing protein OS=Bos taurus GN=TRABD PE=2 SV=1	[more]

BLAST of CmaCh18G012200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5T2_CUCSA	3.4e-115	87.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180280 PE=4 SV=1	[more]
B9I4F6_POPTR	4.2e-97	75.82	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13890g PE=4 SV=2	[more]
D7TMX1_VITVI	5.5e-97	76.54	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0100g00410 PE=4 SV=...	[more]
V4RLJ8_9ROSI	7.2e-97	76.13	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005112mg PE=4 SV=1	[more]
B9R9G9_RICCO	7.2e-97	76.13	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1497430 PE=4 SV=1	[more]

BLAST of CmaCh18G012200 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52030.2	3.5e-87	67.47	TraB family protein	[more]
AT2G32340.1	3.6e-15	34.88	TraB family protein	[more]
AT1G05270.1	1.0e-14	31.51	TraB family protein	[more]

BLAST of CmaCh18G012200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077362\|ref\|XP_008439166.1\|	2.4e-117	89.56	PREDICTED: traB domain-containing protein isoform X1 [Cucumis melo]	[more]
gi\|659077364\|ref\|XP_008439167.1\|	2.4e-117	89.56	PREDICTED: traB domain-containing protein isoform X2 [Cucumis melo]	[more]
gi\|449446067\|ref\|XP_004140793.1\|	4.9e-115	87.95	PREDICTED: traB domain-containing protein isoform X1 [Cucumis sativus]	[more]
gi\|778679467\|ref\|XP_011651134.1\|	4.9e-115	87.95	PREDICTED: traB domain-containing protein isoform X2 [Cucumis sativus]	[more]
gi\|700202207\|gb\|KGN57340.1\|	4.9e-115	87.95	hypothetical protein Csa_3G180280 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002816	Pheromone_shutdown_TraB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G012200.1	CmaCh18G012200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002816	Pheromone shutdown, TraB	PFAM	PF01963	TraB	coord: 55..187 score: 3.5
None	No IPR available	PANTHER	PTHR21530	PHEROMONE SHUTDOWN PROTEIN	coord: 14..242 score: 4.6E
None	No IPR available	PANTHER	PTHR21530:SF1	TRAB FAMILY PROTEIN	coord: 14..242 score: 4.6E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh18G012200	Csa3G180280	Cucumber (Chinese Long) v2	cmacuB408
CmaCh18G012200	MELO3C006872	Melon (DHL92) v3.5.1	cmameB375
CmaCh18G012200	Cla97C05G089750	Watermelon (97103) v2	cmawmbB424

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G012200	Cucumber (Chinese Long) v3	cmacucB0502
CmaCh18G012200	Cucumber (Chinese Long) v3	cmacucB0487
CmaCh18G012200	Watermelon (97103) v2	cmawmbB403
CmaCh18G012200	Wax gourd	cmawgoB0507
CmaCh18G012200	Cucurbita maxima (Rimu)	cmacmaB338
CmaCh18G012200	Cucurbita maxima (Rimu)	cmacmaB396
CmaCh18G012200	Cucumber (Gy14) v1	cgycmaB0716
CmaCh18G012200	Cucurbita moschata (Rifu)	cmacmoB405
CmaCh18G012200	Cucurbita moschata (Rifu)	cmacmoB406
CmaCh18G012200	Cucurbita moschata (Rifu)	cmacmoB416
CmaCh18G012200	Wild cucumber (PI 183967)	cmacpiB413
CmaCh18G012200	Cucumber (Chinese Long) v2	cmacuB420
CmaCh18G012200	Watermelon (Charleston Gray)	cmawcgB352
CmaCh18G012200	Watermelon (Charleston Gray)	cmawcgB365
CmaCh18G012200	Watermelon (97103) v1	cmawmB373
CmaCh18G012200	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G012200	Cucurbita pepo (Zucchini)	cmacpeB425
CmaCh18G012200	Cucurbita pepo (Zucchini)	cmacpeB453
CmaCh18G012200	Bottle gourd (USVL1VR-Ls)	cmalsiB365
CmaCh18G012200	Bottle gourd (USVL1VR-Ls)	cmalsiB387
CmaCh18G012200	Cucumber (Gy14) v2	cgybcmaB352
CmaCh18G012200	Cucumber (Gy14) v2	cgybcmaB630
CmaCh18G012200	Melon (DHL92) v3.6.1	cmamedB407
CmaCh18G012200	Melon (DHL92) v3.6.1	cmamedB432
CmaCh18G012200	Silver-seed gourd	carcmaB0011
CmaCh18G012200	Silver-seed gourd	carcmaB0996
CmaCh18G012200	Silver-seed gourd	carcmaB1208