CmaCh18G009980 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGTGGCGGAGTTGATGCTGTGGAAGAAGAAGAGAGAATCGGCGGCGATGTTGGCCGGAATCAGCGGCGTTTGGTTTCTGCTTGAGGTCTTGGACTACCACTTTGTTACTCTGCTTTGCTATCTACTCATCATTACTATGCTTCTCCTCTTCTCTTGGAACAAATTGGCTCTTCTCATCAACTGGTAAATCCAATTCTTCTTATTCTATTTTTATCTCTAAACTTTCAATTTTGTTCGATTCTGCTTTAAATTCAGATAAATGTCGTAATTTTAAATCTTCGATAAGGTTTCGTTGAAAATAAAGTTGTACAAAATTTGTAAGATTTCAAAAGAAAAATAGTCTAATTCTAACTGTGAGATCCCAAATCCACGGGAGAGAAGAACGAGCGCCAGCGAAGACGCTAGGCCCTGAATGAATGAATTGTGGGATCTTACATTGATTGGAGAGGAGAACGAAACATTTTTTTTTACAAGGATGTGGAAATCTCTCAGCTATGTGTTTTAAAACTTTGAGGGAAAATTCGAAAGTGAAAGCTCAAAGAAGACCATATCTGTTACTAGTGGTTGTACACGGATTTTTTTCCATTAAAATTTGATTTGAAACTAACGTGTTATGAAAATATTTTGTTAAAATTACTGAGTGAATGGGTAAAAATTATCGATCATCATATGGTAAAAATTGATACGGGTAAAGTTGTTTTTTTTATAATAAGGTTTTAGAAGTAAAATAATTTTGTTTGATTTAAATAATTGGATGAATTTGCAAAAATTGAACATAGGATAAAAATTGTAGAACTCGTTTGAATTTATGGTAAAAATTGATACAGTAATTTTTTTTTAATCTTATTGGTGACGTGGCTTGGCAGGGCTCCACCGAGTGTGCATGATTTTGAGATCTCAAACGCCACTCTCACTCATTTCTTTGATACATTCAACTGGTTTCTCCACCACTTCTTTCAAATTTCAACTGCCCAAAACTTTAAGCTATTTGCAATGGTACCCTTACAAATCTCAGTATTTAATTTATACCTATTTTATATTTTTATACGCCAAAGTTGTATTGGTACCCTTCCAAATCTCACAATCCACCCCTTTCAGGGCCTAACATCTTCGCTGACATTCGTTTTTCTCTCCAATCAATTTGGAAATTCATAATTCACCCTCTTCGAGAGCCAGCATACTCATTGGCACATCGCCTCGTGTCCACCTCTTGGGGGCTCAGTGTTGTTGCTGGCACACTGAGCTTTTGGGGCCCAGCGTCCTTGCTGACACATTACGCAATGTCTGACTCTAATCTTATTTGTAACGGCCCAAACCCACCATGAATCGATATTATCATTTTTGAGCTTCCCTCAAGATTTTTAAAATGCGTCTTGCTAGGGAGAGGTTTCCACACCTTCTAAGGAATGCTTCGTTGTCCCTCTCCAACCGATGTACTATCTTACAATCCACCCTTTGCTAACACTCGTTCCCCTCTCCAATCAACGTGGGATCTCACACATAATCTTTATAAGATAGTAATTACTCGGGTGAGTAACTAAAACATGATCAAATGAATCAACCCATTTCGCAGGTAATGGGTAGCATTTGGTTGGTATCACTAATTGGTGAGCTGATGAACTCATTGAATCTCATATACATTGGTTGGTATCACTCTCTTCCTCTCTCACTTTCAATAGATTTTGTGTGTCTAAAAGGACCGTGACATGTTGTTCTTAATATTGAGCAGTGTTTTTGAGCTTACAAACAGTTCCAATTGTGTTGGACAAGTACGAGGAGGAGATTCATAAGCTTGTCTCCAACCTCAAGTCTTCCATGGACACCTTCTTCCACACTTTACACTCCAATTTTCTCAGCAAAATCCCAAGAAGGACCCATATCAAACAAACTTAGTTCCTAATACCCTATATTTCAATCACTTAGTTCGTCCCGAACCCGTCTTAGATTCAATCAAAATCGAGTTGTATTCCATGTTTTTAAATACGTGTTTGATAGTAGATTTAGAAATCCATTAATGTATGAACCCAT ATGGCAGTGGCGGAGTTGATGCTGTGGAAGAAGAAGAGAGAATCGGCGGCGATGTTGGCCGGAATCAGCGGCGTTTGGTTTCTGCTTGAGGTCTTGGACTACCACTTTGTTACTCTGCTTTGCTATCTACTCATCATTACTATGCTTCTCCTCTTCTCTTGGAACAAATTGGCTCTTCTCATCAACTGGGCTCCACCGAGTGTGCATGATTTTGAGATCTCAAACGCCACTCTCACTCATTTCTTTGATACATTCAACTGGTTTCTCCACCACTTCTTTCAAATTTCAACTGCCCAAAACTTTAAGCTATTTGCAATGGTAATGGGTAGCATTTGGTTGGTATCACTAATTGGTGAGCTGATGAACTCATTGAATCTCATATACATTGTGTTTTTGAGCTTACAAACAGTTCCAATTGTGTTGGACAAGTACGAGGAGGAGATTCATAAGCTTGTCTCCAACCTCAAGTCTTCCATGGACACCTTCTTCCACACTTTACACTCCAATTTTCTCAGCAAAATCCCAAGAAGGACCCATATCAAACAAACTTAGTTCCTAATACCCTATATTTCAATCACTTAGTTCGTCCCGAACCCGTCTTAGATTCAATCAAAATCGAGTTGTATTCCATGTTTTTAAATACGTGTTTGATAGTAGATTTAGAAATCCATTAATGTATGAACCCAT ATGGCAGTGGCGGAGTTGATGCTGTGGAAGAAGAAGAGAGAATCGGCGGCGATGTTGGCCGGAATCAGCGGCGTTTGGTTTCTGCTTGAGGTCTTGGACTACCACTTTGTTACTCTGCTTTGCTATCTACTCATCATTACTATGCTTCTCCTCTTCTCTTGGAACAAATTGGCTCTTCTCATCAACTGGGCTCCACCGAGTGTGCATGATTTTGAGATCTCAAACGCCACTCTCACTCATTTCTTTGATACATTCAACTGGTTTCTCCACCACTTCTTTCAAATTTCAACTGCCCAAAACTTTAAGCTATTTGCAATGGTAATGGGTAGCATTTGGTTGGTATCACTAATTGGTGAGCTGATGAACTCATTGAATCTCATATACATTGTGTTTTTGAGCTTACAAACAGTTCCAATTGTGTTGGACAAGTACGAGGAGGAGATTCATAAGCTTGTCTCCAACCTCAAGTCTTCCATGGACACCTTCTTCCACACTTTACACTCCAATTTTCTCAGCAAAATCCCAAGAAGGACCCATATCAAACAAACTTAG MAVAELMLWKKKRESAAMLAGISGVWFLLEVLDYHFVTLLCYLLIITMLLLFSWNKLALLINWAPPSVHDFEISNATLTHFFDTFNWFLHHFFQISTAQNFKLFAMVMGSIWLVSLIGELMNSLNLIYIVFLSLQTVPIVLDKYEEEIHKLVSNLKSSMDTFFHTLHSNFLSKIPRRTHIKQT
BLAST of CmaCh18G009980 vs. Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2) HSP 1 Score: 122.5 bits (306), Expect = 4.9e-27 Identity = 60/175 (34.29%), Postives = 109/175 (62.29%), Query Frame = 1
BLAST of CmaCh18G009980 vs. Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 1.2e-22 Identity = 56/180 (31.11%), Postives = 108/180 (60.00%), Query Frame = 1
BLAST of CmaCh18G009980 vs. Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 2.9e-19 Identity = 51/176 (28.98%), Postives = 95/176 (53.98%), Query Frame = 1
BLAST of CmaCh18G009980 vs. Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 3.5e-17 Identity = 49/177 (27.68%), Postives = 93/177 (52.54%), Query Frame = 1
BLAST of CmaCh18G009980 vs. Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 7.8e-17 Identity = 51/176 (28.98%), Postives = 93/176 (52.84%), Query Frame = 1
BLAST of CmaCh18G009980 vs. TrEMBL
Match: A0A151U771_CAJCA (Reticulon-like protein OS=Cajanus cajan GN=KK1_007833 PE=4 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 1.9e-33 Identity = 76/174 (43.68%), Postives = 115/174 (66.09%), Query Frame = 1
BLAST of CmaCh18G009980 vs. TrEMBL
Match: A0A0L9U0K2_PHAAN (Reticulon-like protein OS=Phaseolus angularis GN=LR48_Vigan02g244100 PE=4 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 3.2e-33 Identity = 76/174 (43.68%), Postives = 116/174 (66.67%), Query Frame = 1
BLAST of CmaCh18G009980 vs. TrEMBL
Match: A0A0S3SLS4_PHAAN (Reticulon-like protein OS=Vigna angularis var. angularis GN=Vigan.08G034200 PE=4 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 3.2e-33 Identity = 76/174 (43.68%), Postives = 116/174 (66.67%), Query Frame = 1
BLAST of CmaCh18G009980 vs. TrEMBL
Match: A0A0B2SCC1_GLYSO (Reticulon-like protein OS=Glycine soja GN=glysoja_020145 PE=4 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 4.1e-33 Identity = 76/174 (43.68%), Postives = 115/174 (66.09%), Query Frame = 1
BLAST of CmaCh18G009980 vs. TrEMBL
Match: I1NFN7_SOYBN (Reticulon-like protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 4.1e-33 Identity = 76/174 (43.68%), Postives = 115/174 (66.09%), Query Frame = 1
BLAST of CmaCh18G009980 vs. TAIR10
Match: AT3G18260.1 (AT3G18260.1 Reticulon family protein) HSP 1 Score: 107.8 bits (268), Expect = 7.0e-24 Identity = 56/180 (31.11%), Postives = 108/180 (60.00%), Query Frame = 1
BLAST of CmaCh18G009980 vs. TAIR10
Match: AT4G23630.1 (AT4G23630.1 VIRB2-interacting protein 1) HSP 1 Score: 96.7 bits (239), Expect = 1.6e-20 Identity = 51/176 (28.98%), Postives = 95/176 (53.98%), Query Frame = 1
BLAST of CmaCh18G009980 vs. TAIR10
Match: AT1G68230.2 (AT1G68230.2 Reticulon family protein) HSP 1 Score: 93.2 bits (230), Expect = 1.8e-19 Identity = 45/128 (35.16%), Postives = 81/128 (63.28%), Query Frame = 1
BLAST of CmaCh18G009980 vs. TAIR10
Match: AT4G11220.1 (AT4G11220.1 VIRB2-interacting protein 2) HSP 1 Score: 89.7 bits (221), Expect = 2.0e-18 Identity = 49/177 (27.68%), Postives = 93/177 (52.54%), Query Frame = 1
BLAST of CmaCh18G009980 vs. TAIR10
Match: AT2G46170.1 (AT2G46170.1 Reticulon family protein) HSP 1 Score: 88.6 bits (218), Expect = 4.4e-18 Identity = 51/176 (28.98%), Postives = 93/176 (52.84%), Query Frame = 1
BLAST of CmaCh18G009980 vs. NCBI nr
Match: gi|502120705|ref|XP_004497054.1| (PREDICTED: reticulon-like protein B14 [Cicer arietinum]) HSP 1 Score: 153.7 bits (387), Expect = 3.1e-34 Identity = 77/174 (44.25%), Postives = 117/174 (67.24%), Query Frame = 1
BLAST of CmaCh18G009980 vs. NCBI nr
Match: gi|1021565600|ref|XP_016174148.1| (PREDICTED: reticulon-like protein B14 [Arachis ipaensis]) HSP 1 Score: 152.1 bits (383), Expect = 9.2e-34 Identity = 74/174 (42.53%), Postives = 116/174 (66.67%), Query Frame = 1
BLAST of CmaCh18G009980 vs. NCBI nr
Match: gi|1012244403|ref|XP_015941798.1| (PREDICTED: reticulon-like protein B14 [Arachis duranensis]) HSP 1 Score: 152.1 bits (383), Expect = 9.2e-34 Identity = 76/174 (43.68%), Postives = 116/174 (66.67%), Query Frame = 1
BLAST of CmaCh18G009980 vs. NCBI nr
Match: gi|951023123|ref|XP_014513097.1| (PREDICTED: reticulon-like protein B14 [Vigna radiata var. radiata]) HSP 1 Score: 151.0 bits (380), Expect = 2.0e-33 Identity = 77/174 (44.25%), Postives = 116/174 (66.67%), Query Frame = 1
BLAST of CmaCh18G009980 vs. NCBI nr
Match: gi|1012363950|gb|KYP75133.1| (Reticulon-like protein B9 [Cajanus cajan]) HSP 1 Score: 150.6 bits (379), Expect = 2.7e-33 Identity = 76/174 (43.68%), Postives = 115/174 (66.09%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |