CmaCh18G008550 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G008550
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr18 : 7469473 .. 7469731 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAATAGGTGTTGTGCGTATCGACTTGTGCAGTGCTATAGCTAACGCATTAAGTATCCTGCCTGGGGAGTACGTTCGCAAGAATGAAACTTTGCCCACTAAAGCATTACGTGAGCTGGGTTCAGAACGTCATGAGATAGTTCTGTCCATATCCAGTGTACGCATTAGAGTCTTGAGAGGATGTTGCCCTAGCTCGAGAGAACCTCGAAGGACGCACTTCTGGTGTACCAATTATTGTGCCCACGGGTATAACTGA

mRNA sequence

ATGGATAATAGTGCTATAGCTAACGCATTAAGTATCCTGCCTGGGGAGTACGTTCGCAAGAATGAAACTTTGCCCACTAAAGCATTACGTGAGCTGGGTTCAGAACGTCATGAGATAGTTCTGTCCATATCCAGTGTACGCATTAGAGTCTTGAGAGGATGTTGCCCTAGCTCGAGAGAACCTCGAAGGACGCACTTCTGGTGTACCAATTATTGTGCCCACGGGTATAACTGA

Coding sequence (CDS)

ATGGATAATAGTGCTATAGCTAACGCATTAAGTATCCTGCCTGGGGAGTACGTTCGCAAGAATGAAACTTTGCCCACTAAAGCATTACGTGAGCTGGGTTCAGAACGTCATGAGATAGTTCTGTCCATATCCAGTGTACGCATTAGAGTCTTGAGAGGATGTTGCCCTAGCTCGAGAGAACCTCGAAGGACGCACTTCTGGTGTACCAATTATTGTGCCCACGGGTATAACTGA

Protein sequence

MDNSAIANALSILPGEYVRKNETLPTKALRELGSERHEIVLSISSVRIRVLRGCCPSSREPRRTHFWCTNYCAHGYN

Homology

[Close]

BLAST of CmaCh18G008550 vs. TrEMBL
Match: A0A0D2SQB8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G237900 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-10
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 1


Query: 25 PTKALRELGSERHEIVLSISSVRIRVLRGCCPSSREPRRTHFWCTNYCAHG 76
          P KA+RELGSE HE V SIS V +R LRG  PS+R P RTH WCTNY AHG
Sbjct: 9  PIKAVRELGSECHETVRSISGVGVRALRGPFPSTRGPGRTHLWCTNYRAHG 59

[Close]

BLAST of CmaCh18G008550 vs. TrEMBL
Match: A0A0S3RYA5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G314400 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-09
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 1


Query: 25 PTKALRELGSERHEIVLSISSVRIRVLRGCCPSSREPRRTHFWCTNYCAHG 76
          P KA+RELGSER E V SIS V +R LRG  PS+R P RTH WC +Y AHG
Sbjct: 9  PIKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCASYRAHG 59

[Close]

BLAST of CmaCh18G008550 vs. TrEMBL
Match: V7CSC2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G037800g PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.9e-09
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 1


Query: 25 PTKALRELGSERHEIVLSISSVRIRVLRGCCPSSREPRRTHFWCTNYCAHG 76
          P KA+RELG ERHEIV SI  V +R LRG  PS+R P RTH WC +Y  HG
Sbjct: 9  PIKAVRELGLERHEIVRSIFGVGVRALRGPFPSTRGPGRTHLWCASYRVHG 59

[Close]

BLAST of CmaCh18G008550 vs. TrEMBL
Match: A0A0J8CFQ3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g113470 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-08
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1


Query: 25 PTKALRELGSERHEIVLSISSVRIRVLRGCCPSSREPRRTHFWCTNYCAHG 76
          P KA+RELGSE  E V SIS V +R LRG  PS+R P R H WCT+Y +HG
Sbjct: 34 PIKAVRELGSELRETVRSISGVGVRALRGPFPSTRGPGRMHLWCTSYRSHG 84

[Close]

BLAST of CmaCh18G008550 vs. TrEMBL
Match: A0A0C5DZR2_GRALE (Uncharacterized protein OS=Gracilariopsis lemaneiformis GN=orf1 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-07
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1


Query: 27 KALRELGSERHEIVLSISSVRIRVLRGCCPSSREPRRTHFWCTNYCAH 75
          KA+RELGSER E V SIS V +RVLRG   S+R P  T+ WCT+YCA+
Sbjct: 2  KAVRELGSERRETVRSISGVGVRVLRGFLLSTRGPGETYRWCTSYCAN 49

[Close]

BLAST of CmaCh18G008550 vs. NCBI nr
Match: gi|763777018|gb|KJB44141.1| (hypothetical protein B456_007G237900 [Gossypium raimondii])

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-10
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 1


Query: 25 PTKALRELGSERHEIVLSISSVRIRVLRGCCPSSREPRRTHFWCTNYCAHG 76
          P KA+RELGSE HE V SIS V +R LRG  PS+R P RTH WCTNY AHG
Sbjct: 9  PIKAVRELGSECHETVRSISGVGVRALRGPFPSTRGPGRTHLWCTNYRAHG 59

[Close]

BLAST of CmaCh18G008550 vs. NCBI nr
Match: gi|1021568263|ref|XP_016175353.1| (PREDICTED: serine/threonine-protein kinase At3g07070-like [Arachis ipaensis])

HSP 1 Score: 71.2 bits (173), Expect = 8.6e-10
Identity = 34/51 (66.67%), Postives = 37/51 (72.55%), Query Frame = 1


Query: 25 PTKALRELGSERHEIVLSISSVRIRVLRGCCPSSREPRRTHFWCTNYCAHG 76
          P KA+RELGSE HE V SIS V IR LRG  PS+R P RTH WC +Y AHG
Sbjct: 9  PIKAVRELGSEHHETVRSISGVGIRALRGPFPSTRGPGRTHLWCASYRAHG 59

[Close]

BLAST of CmaCh18G008550 vs. NCBI nr
Match: gi|965670975|dbj|BAT85582.1| (hypothetical protein VIGAN_04314400 [Vigna angularis var. angularis])

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-09
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 1


Query: 25 PTKALRELGSERHEIVLSISSVRIRVLRGCCPSSREPRRTHFWCTNYCAHG 76
          P KA+RELGSER E V SIS V +R LRG  PS+R P RTH WC +Y AHG
Sbjct: 9  PIKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCASYRAHG 59

[Close]

BLAST of CmaCh18G008550 vs. NCBI nr
Match: gi|593796004|ref|XP_007161040.1| (hypothetical protein PHAVU_001G037800g [Phaseolus vulgaris])

HSP 1 Score: 68.6 bits (166), Expect = 5.6e-09
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 1


Query: 25 PTKALRELGSERHEIVLSISSVRIRVLRGCCPSSREPRRTHFWCTNYCAHG 76
          P KA+RELG ERHEIV SI  V +R LRG  PS+R P RTH WC +Y  HG
Sbjct: 9  PIKAVRELGLERHEIVRSIFGVGVRALRGPFPSTRGPGRTHLWCASYRVHG 59

[Close]

BLAST of CmaCh18G008550 vs. NCBI nr
Match: gi|870859394|gb|KMT10843.1| (hypothetical protein BVRB_5g113470 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 65.5 bits (158), Expect = 4.7e-08
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1


Query: 25 PTKALRELGSERHEIVLSISSVRIRVLRGCCPSSREPRRTHFWCTNYCAHG 76
          P KA+RELGSE  E V SIS V +R LRG  PS+R P R H WCT+Y +HG
Sbjct: 34 PIKAVRELGSELRETVRSISGVGVRALRGPFPSTRGPGRMHLWCTSYRSHG 84

The following BLAST results are available for this feature:

BLAST of CmaCh18G008550 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh18G008550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2SQB8_GOSRA	1.2e-10	68.63	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G237900 PE=4 SV=1	[more]
A0A0S3RYA5_PHAAN	1.8e-09	64.71	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G314400 PE=...	[more]
V7CSC2_PHAVU	3.9e-09	62.75	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G037800g PE=4 SV=1	[more]
A0A0J8CFQ3_BETVU	3.3e-08	60.78	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g113470 PE=4 S...	[more]
A0A0C5DZR2_GRALE	3.7e-07	62.50	Uncharacterized protein OS=Gracilariopsis lemaneiformis GN=orf1 PE=4 SV=1	[more]

BLAST of CmaCh18G008550 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh18G008550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|763777018\|gb\|KJB44141.1\|	1.7e-10	68.63	hypothetical protein B456_007G237900 [Gossypium raimondii]	[more]
gi\|1021568263\|ref\|XP_016175353.1\|	8.6e-10	66.67	PREDICTED: serine/threonine-protein kinase At3g07070-like [Arachis ipaensis]	[more]
gi\|965670975\|dbj\|BAT85582.1\|	2.5e-09	64.71	hypothetical protein VIGAN_04314400 [Vigna angularis var. angularis]	[more]
gi\|593796004\|ref\|XP_007161040.1\|	5.6e-09	62.75	hypothetical protein PHAVU_001G037800g [Phaseolus vulgaris]	[more]
gi\|870859394\|gb\|KMT10843.1\|	4.7e-08	60.78	hypothetical protein BVRB_5g113470 [Beta vulgaris subsp. vulgaris]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009536	plastid
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G008550.1	CmaCh18G008550.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G008550	Cucumber (Chinese Long) v3	cmacucB0498
CmaCh18G008550	Watermelon (97103) v2	cmawmbB427
CmaCh18G008550	Wax gourd	cmawgoB0540
CmaCh18G008550	Cucurbita maxima (Rimu)	cmacmaB402
CmaCh18G008550	Cucumber (Gy14) v1	cgycmaB0849
CmaCh18G008550	Cucurbita moschata (Rifu)	cmacmoB406
CmaCh18G008550	Cucurbita moschata (Rifu)	cmacmoB420
CmaCh18G008550	Wild cucumber (PI 183967)	cmacpiB423
CmaCh18G008550	Cucumber (Chinese Long) v2	cmacuB417
CmaCh18G008550	Melon (DHL92) v3.5.1	cmameB351
CmaCh18G008550	Watermelon (Charleston Gray)	cmawcgB367
CmaCh18G008550	Watermelon (97103) v1	cmawmB376
CmaCh18G008550	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G008550	Cucurbita pepo (Zucchini)	cmacpeB429
CmaCh18G008550	Bottle gourd (USVL1VR-Ls)	cmalsiB379
CmaCh18G008550	Cucumber (Gy14) v2	cgybcmaB626
CmaCh18G008550	Melon (DHL92) v3.6.1	cmamedB408
CmaCh18G008550	Silver-seed gourd	carcmaB1012
CmaCh18G008550	Silver-seed gourd	carcmaB1167