CmaCh18G008090 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G008090
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Serine/arginine-rich splicing factor 7
Location	Cma_Chr18 : 7074572 .. 7077581 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGATTGGCGAAGACAAAGCTCGCCTAAGGTCCGACGAAGCCACAAAGCCGGGGCGAAAAATACATATGGGGCTTAATTCCCCTTAAGGCTAGTCGTGAGCGTGTATGGATCACAACGCCGCACGGTCAAGAAGGTAGGACCGTCACACTCTGCGACTACAGGCAACGCCGTTTTCCTACATTATCACCGGCTGATCTGTTCGTAATCTACGACGATCCGGGGAGATTTTTTTTCTAGGTAGGCTTTAGCTTTGCGATCAACATGAACACAACCCTAATTCTTCTTCATTTCTTCAACGATTATTGTAACCCTTAATTAGCGCTTCGATATTGTTTTTCTTCCTCCATTGTCTGTGAACTCTGATTCATGTTTGTTTTCTTGTTTTTTTAGGTGTGATTTGTTTTCTTTGTGTAGAATGTTTTCCTGGGATTGCTTACTCGTACTATTTTCAGGTGGTTTTTAACTTAATACATTACAATTACTCGAGTTTACATTGGTAATCTGGATCCACGCGTTTCAGAGAGGGATCTTGAAGATGAATTTCGAATGTTCGGTGTTCTTAGGAGGTGATTTCCGTTTGAAATTAGAGGCCGCCTTCATATATATTTCTTAAATTGAAACATTTTGGACGAGATATTTACCGAATCGGTTGAAATGGGAAATATTCATGGGTTCTTTCTGTATTGTACATAGTTTTTTTATTTCGCTAAGCTATCTATCCATGGCGTTTTCACATGGCCAAAGTTAGATATTCTGGCACTCGGCAGGGGATGCAGAAAGCCTTACTCTCTTTGAATTTTAGAACCTCTGTTTTTAATCTGAGTACTATTGAAGTTGACTGGTTTCAGCCTCTCAGCAATGGGAGTTCAGTAGTTACGCTTTGCTTTGTACATAAGACCCTGAGACATAGACTCTTTAAGATATGTCCTCTAAAGTTTGCTGATGGCTATCCTTGAGATCGGTGGAACCAATGTGCATGCCTCATATATTACCTCGACAGAATGTCAGATGTTCTACGGTTTATTTCATTGGTAGAATGGAAAGAACTAAGCGAAGAGGGACCGGCGGATAATGAATAGGAAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCTGAATGGATGGTCTTATGTCTATTACCTGTTCTTCATCCCGAGTTGAGTCTGATCATTCAGATATGCTTCATGGACATTTATTTCGTAATTGCATATAAACTATTAAGATGAGCTAGCTTTAATTTGAAAGAATATATATGTTCCCTTGTATCTTTGTCTTAAGCTGCATTCTGAATTATTGGTCTTTGAATAAAATAATACAGTGTGTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATTGAGTTTGATGATCGCAGGGATGCTCTAGATGCAATACAGGCATTGGATAGTCAGTTTTAAAAAATATTTCTTGTACTTGTAGATATCAAGTTGTGCCTTTCATTCCTTCTATCAAATGATATTTGTTTTCTTATGTATATATATGCAGCCTTTTCTTGTATTATCAATCTACTTTCATTACGTGTTTTTTCCTCAGCTTTATCTGCCATCTAGTTTTCATTGGCGCAGTGAACTAAAAATTTATAATATATATAGTTTAATATCAATGCAACCGCAAAACTGAACTAAATCTTGGAAATTATAGTCGATCCTTAATCCAAGTCAAATGTGGTCGTTTTCTAGTTCCTAGGGCTTATAGGATGACCCCTTATCCTTCATTCTTATTTTTATTTCCTTTGAGTTAAGTCTATCTTATCTTTTATGTGTGATTTTTTTGGGTTCTTGTAATAGGGAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCTAAAGGCGGTGGAGGTGGTGGTGGTGGTGATTTGAAATGTTATGAATGTGGTGAACCTGGTCATTTTGCTCGAGAGTGTCGTTCTCGTGGGGGCTCACGAGGCATTGGAGGTGGCTTGCGTCGTAGTCCTTCTCCTCGCGCCGCAGGAGTCCAAGTTATGAAAGATATGGTCGCAGGTGCATCAAAGCTTTGTTTGTGTTTTTAAACACACCGAGTTATCTAAACCAACAAGTGGTTTCATATAAAGTTTAGGTTTTGATGTTTTATCACACTTTTATCTTTTCCCTTTTCCATGTAGGAGTAATAGTCCTCGTGGTAAAAGATCTCCACGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGGAGTTACAGCAGATCTCCTCCACTCCGTCATGCTCGCCGTGCCTCACCTTATGCTAACGGGTATGCCTGATTCCTAATAAATGAAAACTATTCACTAAAACTAGTTAGGTAGTTCCTGTAGGGAGGACTTAATTGCCTTAATTGGGTGTTTTTGGTCACATTAACCTTCGGTAATTACTGGGAATTAGTGCAGTAGACCAAAGCTATCTTTGGGGCCTATTAAGTCTCCCAAAATTAAGTGAGAAATGATTCTCTACTACTAATTAATGTCAATACATACTTGATTGAGCAATATATTCCATAACTTCTTCTTTAGATACAAATGCATCCATCTTAGAGCTGCATGATTATCATTATTGCAGAGATTGATCCCGGAATCGAGGCTGATGCTGTGCTTGTAGAAATTAGATGATGGTGTTTCTGCTATACTGTAGTTCTATTAGGAATTGTGGAATGAGGCGGAATCATGTAGTTAAGTTCGTCTTTGACAATTGGTTCTCTTTGAAACCTGGATTTGGATGGGTGTCTACCAGGTGTTTTAAGCCACCAAATGGCGTTCTGTCTGGAACCGTTTTGTGTTGGCTCTCTTCTACCTGCTGAAACTCGGAGGTCGCGTTCTTGCTTTCAAAATGATATCTATTCCCTAGAATTTTATACCTACCTCTCTCTATATGTTTATTAGTGTTTCTTTTTCATTGGATGTCCCTAAAGATTTATCTGTTGGCTGTTTTTTTTTTTTTTTTTT

mRNA sequence

ATGTTCGATTGGCGAAGACAAAGCTCGCCTAAGGCTAGTCGTGAGCGTGTATGGATCACAACGCCGCACGGTCAAGAAGGTAGGACCGTCACACTCTGCGACTACAGGCAACGCCGTTTTCCTACATTATCACCGGCTGATCTGTGTGATTTGTTTTCTTTGTGTAGAATGTTTTCCTGGGATTGCTTACTCGTACTATTTTCAGAGAGGGATCTTGAAGATGAATTTCGAATGTTCGGTGTTCTTAGGAGTGTGTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATTGAGTTTGATGATCGCAGGGATGCTCTAGATGCAATACAGGCATTGGATAGGAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCTAAAGGCGGTGGAGGTGGTGGTGGTGGTGATTTGAAATGTTATGAATGTGGTGAACCTGGTCATTTTGCTCGAGAGTGTCGTTCTCGTGGGGGCTCACGAGGCATTGGAGGTGGCTTGCGTCGTAGTCCTTCTCCTCGCGCCGCAGGAGTCCAAGTTATGAAAGATATGGTCGCAGGAGTAATAGTCCTCGTGGTAAAAGATCTCCACGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGGAGTTACAGCAGATCTCCTCCACTCCGTCATGCTCGCCGTGCCTCACCTTATGCTAACGGAGATTGATCCCGGAATCGAGGCTGATGCTGTGCTTGTAGAAATTAGATGATGGTGTTTCTGCTATACTGTAGTTCTATTAGGAATTGTGGAATGAGGCGGAATCATGTAGTTAAGTTCGTCTTTGACAATTGGTTCTCTTTGAAACCTGGATTTGGATGGGTGTCTACCAGGTGTTTTAAGCCACCAAATGGCGTTCTGTCTGGAACCGTTTTGTGTTGGCTCTCTTCTACCTGCTGAAACTCGGAGGTCGCGTTCTTGCTTTCAAAATGATATCTATTCCCTAGAATTTTATACCTACCTCTCTCTATATGTTTATTAGTGTTTCTTTTTCATTGGATGTCCCTAAAGATTTATCTGTTGGCTGTTTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGTTCGATTGGCGAAGACAAAGCTCGCCTAAGGCTAGTCGTGAGCGTGTATGGATCACAACGCCGCACGGTCAAGAAGGTAGGACCGTCACACTCTGCGACTACAGGCAACGCCGTTTTCCTACATTATCACCGGCTGATCTGTGTGATTTGTTTTCTTTGTGTAGAATGTTTTCCTGGGATTGCTTACTCGTACTATTTTCAGAGAGGGATCTTGAAGATGAATTTCGAATGTTCGGTGTTCTTAGGAGTGTGTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATTGAGTTTGATGATCGCAGGGATGCTCTAGATGCAATACAGGCATTGGATAGGAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCTAAAGGCGGTGGAGGTGGTGGTGGTGGTGATTTGAAATGTTATGAATGTGGTGAACCTGGTCATTTTGCTCGAGAGTGTCGTTCTCGTGGGGGCTCACGAGGCATTGGAGGTGGCTTGCGTCGTAGTCCTTCTCCTCGCGCCGCAGGAGTCCAAGTTATGAAAGATATGGTCGCAGGAGTAATAGTCCTCGTGGTAAAAGATCTCCACGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGGAGTTACAGCAGATCTCCTCCACTCCGTCATGCTCGCCGTGCCTCACCTTATGCTAACGGAGATTGATCCCGGAATCGAGGCTGATGCTGTGCTTGTAGAAATTAGATGA

Protein sequence

MFDWRRQSSPKASRERVWITTPHGQEGRTVTLCDYRQRRFPTLSPADLCDLFSLCRMFSWDCLLVLFSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKNGWRVELSHNSKGGGGGGGGDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSPRAAGVQVMKDMVAGVIVLVVKDLHDVAALHLLSVVGVTADLLHSVMLAVPHLMLTEIDPGIEADAVLVEIR

Homology

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BLAST of CmaCh18G008090 vs. Swiss-Prot
Match: RSZ21_ARATH (Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana GN=RSZ21 PE=1 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 5.1e-40
Identity = 83/111 (74.77%), Postives = 88/111 (79.28%), Query Frame = 1


Query: 68  SERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKNGWRVELSHNSK 127
           +ER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALDRKNGWRVELSH  K
Sbjct: 14  TERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRKNGWRVELSHKDK 73

Query: 128 GGGGGGGG------DLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSPR 173
           GG GGGGG      D KCYECGE GHFARECR     RG G   RRSPSPR
Sbjct: 74  GGRGGGGGRRGGIEDSKCYECGELGHFARECR-----RGRGSVRRRSPSPR 119

[Close]

BLAST of CmaCh18G008090 vs. Swiss-Prot
Match: RZ22A_ARATH (Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana GN=RSZ22A PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.3e-37
Identity = 78/117 (66.67%), Postives = 86/117 (73.50%), Query Frame = 1


Query: 68  SERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKNGWRVELSHNSK 127
           +ER+LEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ +D KNGWRVE SHN  
Sbjct: 14  TERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGKNGWRVEQSHNRG 73

Query: 128 GGGGGGGG-------------DLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSP 172
           GGGG GGG             DLKCYECGE GHFARECRSRGGS G      RS SP
Sbjct: 74  GGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRSRGGSGGRRRSRSRSRSP 130

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BLAST of CmaCh18G008090 vs. Swiss-Prot
Match: RZP23_ORYSJ (Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp. japonica GN=RSZ23 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.6e-36
Identity = 75/104 (72.12%), Postives = 85/104 (81.73%), Query Frame = 1


Query: 70  RDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKNGWRVELSHNSKGG 129
           R++EDEFR+FGVLRSVWVAR+PPG+AFI+FDDRRDA DAI+ LD KNGWRVELS  +  G
Sbjct: 16  REIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLDGKNGWRVELSTKAGSG 75

Query: 130 GG---GGGGDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPS 171
            G    GG D+KCYECGEPGHFARECR R GS G+G G RRS S
Sbjct: 76  RGRDRSGGSDMKCYECGEPGHFARECRLRIGSGGLGSGRRRSRS 119

[Close]

BLAST of CmaCh18G008090 vs. Swiss-Prot
Match: RZ21A_ORYSJ (Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica GN=RSZ21A PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.3e-35
Identity = 74/105 (70.48%), Postives = 84/105 (80.00%), Query Frame = 1


Query: 70  RDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKNGWRVELSHNSKGG 129
           R+LEDEFR+FGVLRSVWVAR+PPG+AFI+FDDRRDA DAI+ +D KNGWRVELS N+  G
Sbjct: 16  RELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAIRDIDGKNGWRVELSRNASSG 75

Query: 130 GGG----GGGDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPS 171
            GG    G  + KCYECGE GHFARECR R GS G+G G RRS S
Sbjct: 76  RGGRDRYGSSESKCYECGETGHFARECRLRIGSGGLGSGRRRSRS 120

[Close]

BLAST of CmaCh18G008090 vs. Swiss-Prot
Match: RSZ22_ARATH (Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana GN=RSZ22 PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.3e-35
Identity = 78/119 (65.55%), Postives = 88/119 (73.95%), Query Frame = 1


Query: 68  SERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKNGWRVELSHN-- 127
           +ER+LEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ALD KNGWRVE SHN  
Sbjct: 14  TERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGKNGWRVEQSHNRG 73

Query: 128 ---------SKGGGGGG-----GGDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPS 171
                     +GGGGGG     G DLKCYECGE GHFARECR+RGG+     G RRS S
Sbjct: 74  ERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNRGGT-----GRRRSKS 127

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BLAST of CmaCh18G008090 vs. TrEMBL
Match: A0A0D2SJB1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G183600 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.4e-52
Identity = 120/172 (69.77%), Postives = 130/172 (75.58%), Query Frame = 1


Query: 68  SERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKNGWRVELSHNSK 127
           +ERDLEDEFR+FGVLRSVWVARRPPGYAFIEFDDRRDA+DAI+ LD KNGWRVELSHNSK
Sbjct: 14  TERDLEDEFRIFGVLRSVWVARRPPGYAFIEFDDRRDAIDAIRELDGKNGWRVELSHNSK 73

Query: 128 GGGG-----GGGGDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSPRAAGVQVMKDM 187
           GGGG     GGG DLKCYECGEPGHFARECRSR GSRG+G G RRSPSPR    +     
Sbjct: 74  GGGGRGGRRGGGEDLKCYECGEPGHFARECRSRYGSRGLGSGRRRSPSPRRR--RSPSYG 133

Query: 188 VAGVIVLVVKDLHDVAALHLLSVVGVTADLLHSVMLAVPHLMLTEIDPGIEA 235
                 +V +DL   AA HL+ VVGVTA  LH V+L V HLM  EI  G EA
Sbjct: 134 YGRRWAIVQEDLLGAAAYHLV-VVGVTAGRLHIVILVVIHLMQMEIKVGTEA 182

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BLAST of CmaCh18G008090 vs. TrEMBL
Match: I3SKI2_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.3e-47
Identity = 94/111 (84.68%), Postives = 99/111 (89.19%), Query Frame = 1


Query: 68  SERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKNGWRVELSHNSK 127
           SERDLEDEFR++GVLRSVWVARRPPGYAF+EFDD+RDALDAI ALD KNGWRVELSHNSK
Sbjct: 14  SERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDGKNGWRVELSHNSK 73

Query: 128 GGGGG-------GGGDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSP 172
           GGGGG       GG DLKCYECGEPGHFARECRSRGGSRG+G G RRSPSP
Sbjct: 74  GGGGGRGGGRGRGGEDLKCYECGEPGHFARECRSRGGSRGLGSGRRRSPSP 124

[Close]

BLAST of CmaCh18G008090 vs. TrEMBL
Match: W9RD44_9ROSA (Serine/arginine-rich splicing factor 7 OS=Morus notabilis GN=L484_027802 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.9e-47
Identity = 95/113 (84.07%), Postives = 99/113 (87.61%), Query Frame = 1


Query: 68  SERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKNGWRVELSHNSK 127
           +ERDLEDEFRM+GVLRSVWVARRPPGYAF+EFDDRRDALDAIQALD KNGWRVELSHNSK
Sbjct: 14  TERDLEDEFRMYGVLRSVWVARRPPGYAFLEFDDRRDALDAIQALDGKNGWRVELSHNSK 73

Query: 128 GGGG--------GGGGDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSPR 173
           GGGG        GGG DLKCYECGEPGHFARECR R GSR +GGG RRSPSPR
Sbjct: 74  GGGGRGGGGRGRGGGDDLKCYECGEPGHFARECRLRVGSRSLGGGRRRSPSPR 126

[Close]

BLAST of CmaCh18G008090 vs. TrEMBL
Match: V4VGM9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032693mg PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.9e-47
Identity = 95/111 (85.59%), Postives = 99/111 (89.19%), Query Frame = 1


Query: 68  SERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKNGWRVELSHNSK 127
           SERDLEDEFRMFGVLRSVWVARRPPGYAF+EFDDRRDA+DAI+ALD KNGWRVELSHNSK
Sbjct: 14  SERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKNGWRVELSHNSK 73

Query: 128 GGGG------GGGGDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSPR 173
           GGGG      GGG DLKCYECGEPGHFARECR R GSRG+G G RRSPSPR
Sbjct: 74  GGGGRGGRGRGGGEDLKCYECGEPGHFARECRLRIGSRGLGSGRRRSPSPR 124

[Close]

BLAST of CmaCh18G008090 vs. TrEMBL
Match: V4TEF9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032693mg PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.9e-47
Identity = 95/111 (85.59%), Postives = 99/111 (89.19%), Query Frame = 1


Query: 68  SERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKNGWRVELSHNSK 127
           SERDLEDEFRMFGVLRSVWVARRPPGYAF+EFDDRRDA+DAI+ALD KNGWRVELSHNSK
Sbjct: 14  SERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDGKNGWRVELSHNSK 73

Query: 128 GGGG------GGGGDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSPR 173
           GGGG      GGG DLKCYECGEPGHFARECR R GSRG+G G RRSPSPR
Sbjct: 74  GGGGRGGRGRGGGEDLKCYECGEPGHFARECRLRIGSRGLGSGRRRSPSPR 124

[Close]

BLAST of CmaCh18G008090 vs. TAIR10
Match: AT1G23860.1 (AT1G23860.1 RS-containing zinc finger protein 21)

HSP 1 Score: 166.0 bits (419), Expect = 2.9e-41
Identity = 83/111 (74.77%), Postives = 88/111 (79.28%), Query Frame = 1


Query: 68  SERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKNGWRVELSHNSK 127
           +ER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALDRKNGWRVELSH  K
Sbjct: 14  TERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRKNGWRVELSHKDK 73

Query: 128 GGGGGGGG------DLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSPR 173
           GG GGGGG      D KCYECGE GHFARECR     RG G   RRSPSPR
Sbjct: 74  GGRGGGGGRRGGIEDSKCYECGELGHFARECR-----RGRGSVRRRSPSPR 119

[Close]

BLAST of CmaCh18G008090 vs. TAIR10
Match: AT2G24590.1 (AT2G24590.1 RNA recognition motif and CCHC-type zinc finger domains containing protein)

HSP 1 Score: 156.0 bits (393), Expect = 3.0e-38
Identity = 78/117 (66.67%), Postives = 86/117 (73.50%), Query Frame = 1


Query: 68  SERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKNGWRVELSHNSK 127
           +ER+LEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ +D KNGWRVE SHN  
Sbjct: 14  TERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGKNGWRVEQSHNRG 73

Query: 128 GGGGGGGG-------------DLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSP 172
           GGGG GGG             DLKCYECGE GHFARECRSRGGS G      RS SP
Sbjct: 74  GGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRSRGGSGGRRRSRSRSRSP 130

[Close]

BLAST of CmaCh18G008090 vs. TAIR10
Match: AT4G31580.1 (AT4G31580.1 serine/arginine-rich 22)

HSP 1 Score: 151.4 bits (381), Expect = 7.3e-37
Identity = 78/119 (65.55%), Postives = 88/119 (73.95%), Query Frame = 1


Query: 68  SERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKNGWRVELSHN-- 127
           +ER+LEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ALD KNGWRVE SHN  
Sbjct: 14  TERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGKNGWRVEQSHNRG 73

Query: 128 ---------SKGGGGGG-----GGDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPS 171
                     +GGGGGG     G DLKCYECGE GHFARECR+RGG+     G RRS S
Sbjct: 74  ERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNRGGT-----GRRRSKS 127

[Close]

BLAST of CmaCh18G008090 vs. TAIR10
Match: AT1G02840.1 (AT1G02840.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 58.9 bits (141), Expect = 4.9e-09
Identity = 46/118 (38.98%), Postives = 57/118 (48.31%), Query Frame = 1


Query: 69  ERDLEDEFRMFG--VLRSVWVARRPPGYAFIEFDDRRDALDAIQALD----RKNGWRVEL 128
           ER++ED F  +G  V   + V  RPPGYAF+EFDD RDA DAI   D      +  RVEL
Sbjct: 20  EREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVEL 79

Query: 129 SH-------NSKGGGGGGGGDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSPRA 174
           +H       +++G   GGG                    RGG RG G G  R PS R+
Sbjct: 80  AHGGRRSSDDTRGSFNGGG--------------------RGGGRGRGDGGSRGPSRRS 117

[Close]

BLAST of CmaCh18G008090 vs. TAIR10
Match: AT3G53500.2 (AT3G53500.2 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-08
Identity = 48/124 (38.71%), Postives = 62/124 (50.00%), Query Frame = 1


Query: 70  RDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKN--GWR--VELSHN 129
           RDLE  F  +G +R V + R    YAF+EF D RDA DA   LD ++  G R  VE S  
Sbjct: 25  RDLERLFSRYGRVRDVDMKR---DYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASRG 84

Query: 130 SKGGGGGGG------GDLKCYECGEPGHFARECRS--------RGGSRG-IGGGLRRSPS 175
           +  G    G      G  +C+ CG  GH+AR+C +        R G RG I    + SPS
Sbjct: 85  APRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPS 144

[Close]

BLAST of CmaCh18G008090 vs. NCBI nr
Match: gi|763764001|gb|KJB31255.1| (hypothetical protein B456_005G183600 [Gossypium raimondii])

HSP 1 Score: 214.5 bits (545), Expect = 2.0e-52
Identity = 120/172 (69.77%), Postives = 130/172 (75.58%), Query Frame = 1


Query: 68  SERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKNGWRVELSHNSK 127
           +ERDLEDEFR+FGVLRSVWVARRPPGYAFIEFDDRRDA+DAI+ LD KNGWRVELSHNSK
Sbjct: 14  TERDLEDEFRIFGVLRSVWVARRPPGYAFIEFDDRRDAIDAIRELDGKNGWRVELSHNSK 73

Query: 128 GGGG-----GGGGDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSPRAAGVQVMKDM 187
           GGGG     GGG DLKCYECGEPGHFARECRSR GSRG+G G RRSPSPR    +     
Sbjct: 74  GGGGRGGRRGGGEDLKCYECGEPGHFARECRSRYGSRGLGSGRRRSPSPRRR--RSPSYG 133

Query: 188 VAGVIVLVVKDLHDVAALHLLSVVGVTADLLHSVMLAVPHLMLTEIDPGIEA 235
                 +V +DL   AA HL+ VVGVTA  LH V+L V HLM  EI  G EA
Sbjct: 134 YGRRWAIVQEDLLGAAAYHLV-VVGVTAGRLHIVILVVIHLMQMEIKVGTEA 182

[Close]

BLAST of CmaCh18G008090 vs. NCBI nr
Match: gi|778705101|ref|XP_011655637.1| (PREDICTED: serine/arginine-rich splicing factor RSZ21 isoform X2 [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 3.2e-50
Identity = 101/118 (85.59%), Postives = 103/118 (87.29%), Query Frame = 1


Query: 68  SERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKNGWRVELSHNSK 127
           +ERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALD KNGWRVELSHNSK
Sbjct: 14  TERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSK 73

Query: 128 GGGGGG-------------GGDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSPR 173
           GGGGGG             G DLKCYECGEPGHFARECRSRGGSRG+GGGLRRSPSPR
Sbjct: 74  GGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGVGGGLRRSPSPR 131

[Close]

BLAST of CmaCh18G008090 vs. NCBI nr
Match: gi|659090832|ref|XP_008446226.1| (PREDICTED: serine/arginine-rich splicing factor RSZ21 [Cucumis melo])

HSP 1 Score: 207.2 bits (526), Expect = 3.2e-50
Identity = 101/118 (85.59%), Postives = 103/118 (87.29%), Query Frame = 1


Query: 68  SERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKNGWRVELSHNSK 127
           +ERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALD KNGWRVELSHNSK
Sbjct: 14  TERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSK 73

Query: 128 GGGGGGG-------------GDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSPR 173
           GGGGGGG              DLKCYECGEPGHFARECRSRGGSRG+GGGLRRSPSPR
Sbjct: 74  GGGGGGGRRGRGAGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGVGGGLRRSPSPR 131

[Close]

BLAST of CmaCh18G008090 vs. NCBI nr
Match: gi|778705099|ref|XP_011655636.1| (PREDICTED: serine/arginine-rich splicing factor RSZ21 isoform X1 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 4.1e-50
Identity = 101/119 (84.87%), Postives = 103/119 (86.55%), Query Frame = 1


Query: 68  SERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKNGWRVELSHNSK 127
           +ERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALD KNGWRVELSHNSK
Sbjct: 14  TERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSK 73

Query: 128 GGGGGG--------------GGDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSPR 173
           GGGGGG              G DLKCYECGEPGHFARECRSRGGSRG+GGGLRRSPSPR
Sbjct: 74  GGGGGGGRRGRGGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGVGGGLRRSPSPR 132

[Close]

BLAST of CmaCh18G008090 vs. NCBI nr
Match: gi|764577774|ref|XP_011463379.1| (PREDICTED: serine/arginine-rich splicing factor RSZ21 isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 197.6 bits (501), Expect = 2.5e-47
Identity = 96/113 (84.96%), Postives = 98/113 (86.73%), Query Frame = 1


Query: 68  SERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDRKNGWRVELSHNSK 127
           S+RDLEDEFRMFGVLRSVWVARRPPGYAFIEFDD RDALDAIQ LD KNGWRVELSHNSK
Sbjct: 14  SDRDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDHRDALDAIQRLDGKNGWRVELSHNSK 73

Query: 128 GGGGGGGG--------DLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSPR 173
           GGGGGGGG        DLKCYECGEPGHFARECR R GSRG+G G RRSPSPR
Sbjct: 74  GGGGGGGGRGGRGGGDDLKCYECGEPGHFARECRMRVGSRGLGSGRRRSPSPR 126

The following BLAST results are available for this feature:

BLAST of CmaCh18G008090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RSZ21_ARATH	5.1e-40	74.77	Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana GN=RSZ21 PE=1...	[more]
RZ22A_ARATH	5.3e-37	66.67	Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana GN=RSZ22A PE...	[more]
RZP23_ORYSJ	2.6e-36	72.12	Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp. japonica GN=RS...	[more]
RZ21A_ORYSJ	1.3e-35	70.48	Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica GN=R...	[more]
RSZ22_ARATH	1.3e-35	65.55	Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana GN=RSZ22 PE=1...	[more]

BLAST of CmaCh18G008090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2SJB1_GOSRA	1.4e-52	69.77	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G183600 PE=4 SV=1	[more]
I3SKI2_LOTJA	2.3e-47	84.68	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
W9RD44_9ROSA	3.9e-47	84.07	Serine/arginine-rich splicing factor 7 OS=Morus notabilis GN=L484_027802 PE=4 SV...	[more]
V4VGM9_9ROSI	3.9e-47	85.59	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032693mg PE=4 SV=1	[more]
V4TEF9_9ROSI	3.9e-47	85.59	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032693mg PE=4 SV=1	[more]

BLAST of CmaCh18G008090 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G23860.1	2.9e-41	74.77	RS-containing zinc finger protein 21	[more]
AT2G24590.1	3.0e-38	66.67	RNA recognition motif and CCHC-type zinc finger domains containing p...	[more]
AT4G31580.1	7.3e-37	65.55	serine/arginine-rich 22	[more]
AT1G02840.1	4.9e-09	38.98	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G53500.2	2.4e-08	38.71	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc...	[more]

BLAST of CmaCh18G008090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|763764001\|gb\|KJB31255.1\|	2.0e-52	69.77	hypothetical protein B456_005G183600 [Gossypium raimondii]	[more]
gi\|778705101\|ref\|XP_011655637.1\|	3.2e-50	85.59	PREDICTED: serine/arginine-rich splicing factor RSZ21 isoform X2 [Cucumis sativu...	[more]
gi\|659090832\|ref\|XP_008446226.1\|	3.2e-50	85.59	PREDICTED: serine/arginine-rich splicing factor RSZ21 [Cucumis melo]	[more]
gi\|778705099\|ref\|XP_011655636.1\|	4.1e-50	84.87	PREDICTED: serine/arginine-rich splicing factor RSZ21 isoform X1 [Cucumis sativu...	[more]
gi\|764577774\|ref\|XP_011463379.1\|	2.5e-47	84.96	PREDICTED: serine/arginine-rich splicing factor RSZ21 isoform X2 [Fragaria vesca...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR001878	Znf_CCHC
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016607	nuclear speck
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G008090.1	CmaCh18G008090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 68..115 score: 7.1
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 62..123 score: 4.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 68..127 score: 10
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 136..156 score: 4.
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 138..153 score: 1.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 138..154 score: 1.
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 138..154 score: 11
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 124..157 score: 4.5
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 68..132 score: 1.3
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 68..117 score: 4.03

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh18G008090	Cucsa.285940	Cucumber (Gy14) v1	cgycmaB0799
CmaCh18G008090	Cla010099	Watermelon (97103) v1	cmawmB375
CmaCh18G008090	Csa5G602160	Cucumber (Chinese Long) v2	cmacuB413
CmaCh18G008090	MELO3C012008	Melon (DHL92) v3.5.1	cmameB354
CmaCh18G008090	ClCG05G025210	Watermelon (Charleston Gray)	cmawcgB366
CmaCh18G008090	CmoCh04G018030	Cucurbita moschata (Rifu)	cmacmoB422
CmaCh18G008090	CmoCh18G008110	Cucurbita moschata (Rifu)	cmacmoB406
CmaCh18G008090	Lsi04G005340	Bottle gourd (USVL1VR-Ls)	cmalsiB383
CmaCh18G008090	Cp4.1LG09g04980	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G008090	Cp4.1LG01g15140	Cucurbita pepo (Zucchini)	cmacpeB431
CmaCh18G008090	MELO3C012008.2	Melon (DHL92) v3.6.1	cmamedB411
CmaCh18G008090	CsaV3_5G031680	Cucumber (Chinese Long) v3	cmacucB0495
CmaCh18G008090	Cla97C05G107350	Watermelon (97103) v2	cmawmbB426
CmaCh18G008090	Bhi07G001354	Wax gourd	cmawgoB0543
CmaCh18G008090	CsGy5G022320	Cucumber (Gy14) v2	cgybcmaB623
CmaCh18G008090	Carg14458	Silver-seed gourd	carcmaB1012
CmaCh18G008090	Carg14355	Silver-seed gourd	carcmaB0337

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh18G008090	CmaCh04G017170	Cucurbita maxima (Rimu)	cmacmaB404

The following block(s) are covering this gene:

None