CmaCh18G007220 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G007220
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr18 : 6539255 .. 6539497 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTAGATACTGGCCTGTCATGGGCAGATCAATGGGATAACAACCCTGACCCAAACCCTCCACCGTCATCGGCGGAAAATGGGAAGAAGAAGAACATATTTAAGAAGAAGAAGAAGGAGAAGGAGGAGGGGGGATCCTCCTCCTCCTCCTCCTCCTCCTCCTCATCGGAGAAGAACATATTTAAGAAGGCAAACTTGAAGTGGATAAAGGAATTGCGAAAGAAATCTGAGAAATCTTGA

mRNA sequence

ATGAATGTAGATACTGGCCTGTCATGGGCAGATCAATGGGATAACAACCCTGACCCAAACCCTCCACCGTCATCGGCGGAAAATGGGAAGAAGAAGAACATATTTAAGAAGAAGAAGAAGGAGAAGGAGGAGGGGGGATCCTCCTCCTCCTCCTCCTCCTCCTCCTCATCGGAGAAGAACATATTTAAGAAGGCAAACTTGAAGTGGATAAAGGAATTGCGAAAGAAATCTGAGAAATCTTGA

Coding sequence (CDS)

ATGAATGTAGATACTGGCCTGTCATGGGCAGATCAATGGGATAACAACCCTGACCCAAACCCTCCACCGTCATCGGCGGAAAATGGGAAGAAGAAGAACATATTTAAGAAGAAGAAGAAGGAGAAGGAGGAGGGGGGATCCTCCTCCTCCTCCTCCTCCTCCTCCTCATCGGAGAAGAACATATTTAAGAAGGCAAACTTGAAGTGGATAAAGGAATTGCGAAAGAAATCTGAGAAATCTTGA

Protein sequence

MNVDTGLSWADQWDNNPDPNPPPSSAENGKKKNIFKKKKKEKEEGGSSSSSSSSSSSEKNIFKKANLKWIKELRKKSEKS

Homology

[Close]

BLAST of CmaCh18G007220 vs. TrEMBL
Match: A0A0A0KVC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G590180 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.0e-07
Identity = 42/82 (51.22%), Postives = 49/82 (59.76%), Query Frame = 1


Query: 1  MNVDTGLSWADQWDNNPDPNPPPSSAENGKKKNIFKKKKKEKEEGGSSSSSSSSSSSEKN 60
          M +D GLSWADQWD NPD  PPPSS+EN KKKN                      SS+K+
Sbjct: 1  MGLDGGLSWADQWDYNPD--PPPSSSENEKKKN-------------------KDGSSDKS 60

Query: 61 IFKKANL--KWIKELRKKSEKS 81
           F+K  L  KW+KELRKKS+KS
Sbjct: 61 KFRKTILGFKWMKELRKKSDKS 61

[Close]

BLAST of CmaCh18G007220 vs. TAIR10
Match: AT1G67670.1 (AT1G67670.1 unknown protein)

HSP 1 Score: 53.5 bits (127), Expect = 6.8e-08
Identity = 39/78 (50.00%), Postives = 46/78 (58.97%), Query Frame = 1


Query: 3  VDTGLSWADQWD-NNPDPNPPPSSAENGKKKNIFKKKKKEKEEGGSSSSSSSSSSSEKNI 62
          +D+G SWADQWD NNPDP P  +  +  KKKN     KK+KEE GS SS   +       
Sbjct: 1  MDSGPSWADQWDYNNPDPLPSSTKEDESKKKN-----KKKKEEDGSKSSLGKT------- 60

Query: 63 FKKANLKWIKELRKKSEK 80
                KW+KELRKKSEK
Sbjct: 61 --LLGFKWMKELRKKSEK 64

[Close]

BLAST of CmaCh18G007220 vs. NCBI nr
Match: gi|449435454|ref|XP_004135510.1| (PREDICTED: uncharacterized protein LOC101219061 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 7.1e-07
Identity = 42/82 (51.22%), Postives = 49/82 (59.76%), Query Frame = 1


Query: 1  MNVDTGLSWADQWDNNPDPNPPPSSAENGKKKNIFKKKKKEKEEGGSSSSSSSSSSSEKN 60
          M +D GLSWADQWD NPD  PPPSS+EN KKKN                      SS+K+
Sbjct: 1  MGLDGGLSWADQWDYNPD--PPPSSSENEKKKN-------------------KDGSSDKS 60

Query: 61 IFKKANL--KWIKELRKKSEKS 81
           F+K  L  KW+KELRKKS+KS
Sbjct: 61 KFRKTILGFKWMKELRKKSDKS 61

[Close]

BLAST of CmaCh18G007220 vs. NCBI nr
Match: gi|659090574|ref|XP_008446089.1| (PREDICTED: uncharacterized protein LOC103488917 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-06
Identity = 40/82 (48.78%), Postives = 49/82 (59.76%), Query Frame = 1


Query: 1  MNVDTGLSWADQWDNNPDPNPPPSSAENGKKKNIFKKKKKEKEEGGSSSSSSSSSSSEKN 60
          M +D GLSWADQWD NPD  PPPSS++N KKKN                      SS+K+
Sbjct: 1  MGLDGGLSWADQWDYNPD--PPPSSSDNDKKKN-------------------KDGSSDKS 60

Query: 61 IFKKANL--KWIKELRKKSEKS 81
           F+K  L  KW+K+LRKKS+KS
Sbjct: 61 KFRKTILGFKWMKDLRKKSDKS 61

The following BLAST results are available for this feature:

BLAST of CmaCh18G007220 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh18G007220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVC1_CUCSA	5.0e-07	51.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G590180 PE=4 SV=1	[more]

BLAST of CmaCh18G007220 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67670.1	6.8e-08	50.00	unknown protein	[more]

BLAST of CmaCh18G007220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435454\|ref\|XP_004135510.1\|	7.1e-07	51.22	PREDICTED: uncharacterized protein LOC101219061 [Cucumis sativus]	[more]
gi\|659090574\|ref\|XP_008446089.1\|	2.7e-06	48.78	PREDICTED: uncharacterized protein LOC103488917 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G007220.1	CmaCh18G007220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33386	FAMILY NOT NAMED	coord: 3..79 score: 2.9
None	No IPR available	PANTHER	PTHR33386:SF1	F12A21.18-RELATED	coord: 3..79 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G007220	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G007220	Cucurbita pepo (Zucchini)	cmacpeB421
CmaCh18G007220	Cucurbita pepo (Zucchini)	cmacpeB431
CmaCh18G007220	Cucurbita pepo (Zucchini)	cmacpeB455
CmaCh18G007220	Bottle gourd (USVL1VR-Ls)	cmalsiB383
CmaCh18G007220	Bottle gourd (USVL1VR-Ls)	cmalsiB394
CmaCh18G007220	Cucumber (Gy14) v2	cgybcmaB198
CmaCh18G007220	Cucumber (Gy14) v2	cgybcmaB623
CmaCh18G007220	Melon (DHL92) v3.6.1	cmamedB411
CmaCh18G007220	Melon (DHL92) v3.6.1	cmamedB430
CmaCh18G007220	Silver-seed gourd	carcmaB0337
CmaCh18G007220	Silver-seed gourd	carcmaB0882
CmaCh18G007220	Silver-seed gourd	carcmaB0970
CmaCh18G007220	Cucumber (Chinese Long) v3	cmacucB0486
CmaCh18G007220	Cucumber (Chinese Long) v3	cmacucB0495
CmaCh18G007220	Watermelon (97103) v2	cmawmbB426
CmaCh18G007220	Watermelon (97103) v2	cmawmbB434
CmaCh18G007220	Wax gourd	cmawgoB0510
CmaCh18G007220	Wax gourd	cmawgoB0543
CmaCh18G007220	Cucurbita maxima (Rimu)	cmacmaB178
CmaCh18G007220	Cucurbita maxima (Rimu)	cmacmaB404
CmaCh18G007220	Cucurbita maxima (Rimu)	cmacmaB411
CmaCh18G007220	Cucumber (Gy14) v1	cgycmaB0125
CmaCh18G007220	Cucumber (Gy14) v1	cgycmaB1090
CmaCh18G007220	Cucurbita moschata (Rifu)	cmacmoB392
CmaCh18G007220	Cucurbita moschata (Rifu)	cmacmoB406
CmaCh18G007220	Cucurbita moschata (Rifu)	cmacmoB422
CmaCh18G007220	Cucurbita moschata (Rifu)	cmacmoB427
CmaCh18G007220	Wild cucumber (PI 183967)	cmacpiB412
CmaCh18G007220	Wild cucumber (PI 183967)	cmacpiB419
CmaCh18G007220	Cucumber (Chinese Long) v2	cmacuB407
CmaCh18G007220	Cucumber (Chinese Long) v2	cmacuB413
CmaCh18G007220	Melon (DHL92) v3.5.1	cmameB354
CmaCh18G007220	Melon (DHL92) v3.5.1	cmameB373
CmaCh18G007220	Watermelon (Charleston Gray)	cmawcgB366
CmaCh18G007220	Watermelon (Charleston Gray)	cmawcgB372
CmaCh18G007220	Watermelon (97103) v1	cmawmB364
CmaCh18G007220	Watermelon (97103) v1	cmawmB375