CmaCh18G007140 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G007140
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Urease subunit alpha
Location	Cma_Chr18 : 6474517 .. 6474735 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGTCCTATCCATCCTACAGGTAGGAAAGTTAGCTGATCTTGTTCTATGGAAGCCATCCTTTTTTGGGGCAAAACCAGAAAAGGTGATTAAAGGTGGTACAATTGCATGGGCGAACATGGGCGATCCAAATGCGAGCATTCCTACACCCGAACTGATAAATCCCTATTATCTCTCTCAGCACGACGTTTGGATTGTGCGACAGAAAACACGATAG

mRNA sequence

ATGATTGTCCTATCCATCCTACAGGTAGGAAAGTTAGCTGATCTTGTTCTATGGAAGCCATCCTTTTTTGGGGCAAAACCAGAAAAGGTGATTAAAGGTGGTACAATTGCATGGGCGAACATGGGCGATCCAAATGCGAGCATTCCTACACCCGAACTGATAAATCCCTATTATCTCTCTCAGCACGACGTTTGGATTGTGCGACAGAAAACACGATAG

Coding sequence (CDS)

ATGATTGTCCTATCCATCCTACAGGTAGGAAAGTTAGCTGATCTTGTTCTATGGAAGCCATCCTTTTTTGGGGCAAAACCAGAAAAGGTGATTAAAGGTGGTACAATTGCATGGGCGAACATGGGCGATCCAAATGCGAGCATTCCTACACCCGAACTGATAAATCCCTATTATCTCTCTCAGCACGACGTTTGGATTGTGCGACAGAAAACACGATAG

Protein sequence

MIVLSILQVGKLADLVLWKPSFFGAKPEKVIKGGTIAWANMGDPNASIPTPELINPYYLSQHDVWIVRQKTR

Homology

[Close]

BLAST of CmaCh18G007140 vs. Swiss-Prot
Match: UREA_ORYSJ (Urease OS=Oryza sativa subsp. japonica GN=Os12g0234800 PE=3 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 4.0e-17
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1


Query: 7   LQVGKLADLVLWKPSFFGAKPEKVIKGGTIAWANMGDPNASIPTPE 53
           ++VGKLADLV+WKPSFFGAKPE VIKGG IA ANMGDPNASIPTPE
Sbjct: 700 VEVGKLADLVIWKPSFFGAKPEMVIKGGAIACANMGDPNASIPTPE 745

[Close]

BLAST of CmaCh18G007140 vs. Swiss-Prot
Match: UREA_ORYSI (Urease OS=Oryza sativa subsp. indica PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.0e-17
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1


Query: 7   LQVGKLADLVLWKPSFFGAKPEKVIKGGTIAWANMGDPNASIPTPE 53
           ++VGKLADLV+WKPSFFGAKPE VIKGG IA ANMGDPNASIPTPE
Sbjct: 700 VEVGKLADLVIWKPSFFGAKPEMVIKGGAIACANMGDPNASIPTPE 745

[Close]

BLAST of CmaCh18G007140 vs. Swiss-Prot
Match: UREA_SOYBN (Urease (Fragment) OS=Glycine max PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.0e-17
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 1


Query: 7  LQVGKLADLVLWKPSFFGAKPEKVIKGGTIAWANMGDPNASIPTPE 53
          ++ GKLADLVLWKPSFFGAKPE VIKGG +A+ANMGDPNASIPTPE
Sbjct: 54 VEAGKLADLVLWKPSFFGAKPEMVIKGGEVAYANMGDPNASIPTPE 99

[Close]

BLAST of CmaCh18G007140 vs. Swiss-Prot
Match: UREA_CANEN (Urease OS=Canavalia ensiformis PE=1 SV=3)

HSP 1 Score: 87.4 bits (215), Expect = 6.8e-17
Identity = 37/46 (80.43%), Postives = 43/46 (93.48%), Query Frame = 1


Query: 7   LQVGKLADLVLWKPSFFGAKPEKVIKGGTIAWANMGDPNASIPTPE 53
           ++VGKLADLV+WKPSFFG KPE VIKGG +AWA++GDPNASIPTPE
Sbjct: 697 VEVGKLADLVMWKPSFFGTKPEMVIKGGMVAWADIGDPNASIPTPE 742

[Close]

BLAST of CmaCh18G007140 vs. Swiss-Prot
Match: UREA_ARATH (Urease OS=Arabidopsis thaliana GN=URE PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.9e-16
Identity = 36/50 (72.00%), Postives = 44/50 (88.00%), Query Frame = 1


Query: 3   VLSILQVGKLADLVLWKPSFFGAKPEKVIKGGTIAWANMGDPNASIPTPE 53
           ++  ++V KLADLV+W+P+FFGAKPE +IKGG IAWANMGD NASIPTPE
Sbjct: 691 LIGSVEVKKLADLVIWQPAFFGAKPEMIIKGGNIAWANMGDANASIPTPE 740

[Close]

BLAST of CmaCh18G007140 vs. TrEMBL
Match: K3XV94_SETIT (Urease OS=Setaria italica GN=SETIT_005851mg PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-17
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1


Query: 7   LQVGKLADLVLWKPSFFGAKPEKVIKGGTIAWANMGDPNASIPTPE 53
           ++VGKLADLVLWKPSFFGAKPE V+KGGTIAWANMGDPNASIPTPE
Sbjct: 698 VEVGKLADLVLWKPSFFGAKPELVVKGGTIAWANMGDPNASIPTPE 743

[Close]

BLAST of CmaCh18G007140 vs. TrEMBL
Match: B9A9C8_MORAL (Urease OS=Morus alba GN=ure PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 6.2e-17
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 7   LQVGKLADLVLWKPSFFGAKPEKVIKGGTIAWANMGDPNASIPTPE--LINPYY 59
           ++VGKLADLVLWKPSFFGAKPE +IKGG IAWANMGDPNASIPTPE  L+ P +
Sbjct: 694 VEVGKLADLVLWKPSFFGAKPEMIIKGGVIAWANMGDPNASIPTPEPVLMRPMF 747

[Close]

BLAST of CmaCh18G007140 vs. TrEMBL
Match: V4SU04_9ROSI (Urease OS=Citrus clementina GN=CICLE_v10030703mg PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 8.1e-17
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1


Query: 7   LQVGKLADLVLWKPSFFGAKPEKVIKGGTIAWANMGDPNASIPTPE 53
           ++VGKLADLVLWKPSFFGAKPE VIKGG IAWANMGDPNASIPTPE
Sbjct: 696 VEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPE 741

[Close]

BLAST of CmaCh18G007140 vs. TrEMBL
Match: A0A0D9XR86_9ORYZ (Urease OS=Leersia perrieri PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 8.1e-17
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 7   LQVGKLADLVLWKPSFFGAKPEKVIKGGTIAWANMGDPNASIPTPE--LINPYY 59
           ++VGKLADLV+WKPSFFGAKPE VIKGG IAWANMGDPNASIPTPE  L+ P +
Sbjct: 698 VEVGKLADLVIWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPVLMRPMF 751

[Close]

BLAST of CmaCh18G007140 vs. TrEMBL
Match: A0A067GQS1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004611mg PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 8.1e-17
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1


Query: 7   LQVGKLADLVLWKPSFFGAKPEKVIKGGTIAWANMGDPNASIPTPE 53
           ++VGKLADLVLWKPSFFGAKPE VIKGG IAWANMGDPNASIPTPE
Sbjct: 694 VEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPE 739

[Close]

BLAST of CmaCh18G007140 vs. TAIR10
Match: AT1G67550.1 (AT1G67550.1 urease)

HSP 1 Score: 83.6 bits (205), Expect = 5.6e-17
Identity = 36/50 (72.00%), Postives = 44/50 (88.00%), Query Frame = 1


Query: 3   VLSILQVGKLADLVLWKPSFFGAKPEKVIKGGTIAWANMGDPNASIPTPE 53
           ++  ++V KLADLV+W+P+FFGAKPE +IKGG IAWANMGD NASIPTPE
Sbjct: 691 LIGSVEVKKLADLVIWQPAFFGAKPEMIIKGGNIAWANMGDANASIPTPE 740

[Close]

BLAST of CmaCh18G007140 vs. NCBI nr
Match: gi|514763447|ref|XP_004965276.1| (PREDICTED: urease [Setaria italica])

HSP 1 Score: 95.1 bits (235), Expect = 5.2e-17
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1


Query: 7   LQVGKLADLVLWKPSFFGAKPEKVIKGGTIAWANMGDPNASIPTPE 53
           ++VGKLADLVLWKPSFFGAKPE V+KGGTIAWANMGDPNASIPTPE
Sbjct: 698 VEVGKLADLVLWKPSFFGAKPELVVKGGTIAWANMGDPNASIPTPE 743

[Close]

BLAST of CmaCh18G007140 vs. NCBI nr
Match: gi|222143560|dbj|BAH19309.1| (urease [Morus alba])

HSP 1 Score: 94.4 bits (233), Expect = 8.9e-17
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 7   LQVGKLADLVLWKPSFFGAKPEKVIKGGTIAWANMGDPNASIPTPE--LINPYY 59
           ++VGKLADLVLWKPSFFGAKPE +IKGG IAWANMGDPNASIPTPE  L+ P +
Sbjct: 694 VEVGKLADLVLWKPSFFGAKPEMIIKGGVIAWANMGDPNASIPTPEPVLMRPMF 747

[Close]

BLAST of CmaCh18G007140 vs. NCBI nr
Match: gi|657995035|ref|XP_008389834.1| (PREDICTED: urease-like [Malus domestica])

HSP 1 Score: 94.4 bits (233), Expect = 8.9e-17
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1


Query: 7   LQVGKLADLVLWKPSFFGAKPEKVIKGGTIAWANMGDPNASIPTPE 53
           ++VGKLADLVLWKPSFFGAKPE VIKGG IAWANMGDPNASIPTPE
Sbjct: 692 IEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPE 737

[Close]

BLAST of CmaCh18G007140 vs. NCBI nr
Match: gi|641863293|gb|KDO81979.1| (hypothetical protein CISIN_1g004611mg [Citrus sinensis])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-16
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1


Query: 7   LQVGKLADLVLWKPSFFGAKPEKVIKGGTIAWANMGDPNASIPTPE 53
           ++VGKLADLVLWKPSFFGAKPE VIKGG IAWANMGDPNASIPTPE
Sbjct: 694 VEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPE 739

[Close]

BLAST of CmaCh18G007140 vs. NCBI nr
Match: gi|568861125|ref|XP_006484057.1| (PREDICTED: urease isoform X1 [Citrus sinensis])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-16
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1


Query: 7   LQVGKLADLVLWKPSFFGAKPEKVIKGGTIAWANMGDPNASIPTPE 53
           ++VGKLADLVLWKPSFFGAKPE VIKGG IAWANMGDPNASIPTPE
Sbjct: 694 VEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPE 739

The following BLAST results are available for this feature:

BLAST of CmaCh18G007140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UREA_ORYSJ	4.0e-17	86.96	Urease OS=Oryza sativa subsp. japonica GN=Os12g0234800 PE=3 SV=2	[more]
UREA_ORYSI	4.0e-17	86.96	Urease OS=Oryza sativa subsp. indica PE=1 SV=1	[more]
UREA_SOYBN	4.0e-17	84.78	Urease (Fragment) OS=Glycine max PE=3 SV=1	[more]
UREA_CANEN	6.8e-17	80.43	Urease OS=Canavalia ensiformis PE=1 SV=3	[more]
UREA_ARATH	9.9e-16	72.00	Urease OS=Arabidopsis thaliana GN=URE PE=3 SV=1	[more]

BLAST of CmaCh18G007140 vs. TrEMBL


Match Name	E-value	Identity	Description
K3XV94_SETIT	3.6e-17	91.30	Urease OS=Setaria italica GN=SETIT_005851mg PE=3 SV=1	[more]
B9A9C8_MORAL	6.2e-17	79.63	Urease OS=Morus alba GN=ure PE=2 SV=1	[more]
V4SU04_9ROSI	8.1e-17	91.30	Urease OS=Citrus clementina GN=CICLE_v10030703mg PE=3 SV=1	[more]
A0A0D9XR86_9ORYZ	8.1e-17	79.63	Urease OS=Leersia perrieri PE=3 SV=1	[more]
A0A067GQS1_CITSI	8.1e-17	91.30	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004611mg PE=3 SV=1	[more]

BLAST of CmaCh18G007140 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67550.1	5.6e-17	72.00	urease	[more]

BLAST of CmaCh18G007140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|514763447\|ref\|XP_004965276.1\|	5.2e-17	91.30	PREDICTED: urease [Setaria italica]	[more]
gi\|222143560\|dbj\|BAH19309.1\|	8.9e-17	79.63	urease [Morus alba]	[more]
gi\|657995035\|ref\|XP_008389834.1\|	8.9e-17	91.30	PREDICTED: urease-like [Malus domestica]	[more]
gi\|641863293\|gb\|KDO81979.1\|	1.2e-16	91.30	hypothetical protein CISIN_1g004611mg [Citrus sinensis]	[more]
gi\|568861125\|ref\|XP_006484057.1\|	1.2e-16	91.30	PREDICTED: urease isoform X1 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011059	Metal-dep_hydrolase_composite
IPR017951	Urease_asu_c

Vocabulary: **Molecular Function**
Term	Definition
GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0009039	urease activity
GO:0016151	nickel cation binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006807	nitrogen compound metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019381	atrazine catabolic process
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0043419	urea catabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016151	nickel cation binding
molecular_function	GO:0009039	urease activity
molecular_function	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G007140.1	CmaCh18G007140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011059	Metal-dependent hydrolase, composite domain	GENE3D	G3DSA:2.30.40.10		coord: 2..54 score: 1.0
IPR011059	Metal-dependent hydrolase, composite domain	unknown	SSF51338	Composite domain of metallo-dependent hydrolases	coord: 7..53 score: 1.2
IPR017951	Urease, alpha subunit, C-terminal	PROFILE	PS51368	UREASE_3	coord: 1..52 score: 23
None	No IPR available	PANTHER	PTHR22642	IMIDAZOLONEPROPIONASE	coord: 7..54 score: 1.5
None	No IPR available	PANTHER	PTHR22642:SF7	UREASE	coord: 7..54 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G007140	Watermelon (97103) v2	cmawmbB407
CmaCh18G007140	Watermelon (97103) v2	cmawmbB434
CmaCh18G007140	Wax gourd	cmawgoB0510
CmaCh18G007140	Wax gourd	cmawgoB0543
CmaCh18G007140	Cucurbita maxima (Rimu)	cmacmaB178
CmaCh18G007140	Cucurbita maxima (Rimu)	cmacmaB404
CmaCh18G007140	Cucurbita maxima (Rimu)	cmacmaB411
CmaCh18G007140	Cucumber (Gy14) v1	cgycmaB0125
CmaCh18G007140	Cucumber (Gy14) v1	cgycmaB1090
CmaCh18G007140	Cucurbita moschata (Rifu)	cmacmoB392
CmaCh18G007140	Cucurbita moschata (Rifu)	cmacmoB406
CmaCh18G007140	Cucurbita moschata (Rifu)	cmacmoB422
CmaCh18G007140	Cucurbita moschata (Rifu)	cmacmoB427
CmaCh18G007140	Wild cucumber (PI 183967)	cmacpiB412
CmaCh18G007140	Wild cucumber (PI 183967)	cmacpiB419
CmaCh18G007140	Cucumber (Chinese Long) v2	cmacuB407
CmaCh18G007140	Cucumber (Chinese Long) v2	cmacuB413
CmaCh18G007140	Melon (DHL92) v3.5.1	cmameB354
CmaCh18G007140	Melon (DHL92) v3.5.1	cmameB373
CmaCh18G007140	Watermelon (Charleston Gray)	cmawcgB337
CmaCh18G007140	Watermelon (Charleston Gray)	cmawcgB372
CmaCh18G007140	Watermelon (97103) v1	cmawmB364
CmaCh18G007140	Watermelon (97103) v1	cmawmB398
CmaCh18G007140	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G007140	Cucurbita pepo (Zucchini)	cmacpeB421
CmaCh18G007140	Cucurbita pepo (Zucchini)	cmacpeB431
CmaCh18G007140	Cucurbita pepo (Zucchini)	cmacpeB455
CmaCh18G007140	Bottle gourd (USVL1VR-Ls)	cmalsiB383
CmaCh18G007140	Bottle gourd (USVL1VR-Ls)	cmalsiB394
CmaCh18G007140	Cucumber (Gy14) v2	cgybcmaB198
CmaCh18G007140	Cucumber (Gy14) v2	cgybcmaB623
CmaCh18G007140	Melon (DHL92) v3.6.1	cmamedB411
CmaCh18G007140	Melon (DHL92) v3.6.1	cmamedB430
CmaCh18G007140	Silver-seed gourd	carcmaB0337
CmaCh18G007140	Silver-seed gourd	carcmaB0882
CmaCh18G007140	Silver-seed gourd	carcmaB0970
CmaCh18G007140	Cucumber (Chinese Long) v3	cmacucB0486
CmaCh18G007140	Cucumber (Chinese Long) v3	cmacucB0495