CmaCh18G006230 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh18G006230
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description30S ribosomal protein S12-B
LocationCma_Chr18 : 5509573 .. 5515225 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAGGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACCAGAACATTACGCTTTTTGAATTACCTTAATCAAAACTAAAATGGATGAGTTATAGCGGAAACAAAATAGAGTAAAAAGTACTCTGATCTTATCACATGACAGTTGAGTTGGGATCATGGACCAATGAAAAGGTGACATGTGTACTTACATTTTTAATTGTTTTTTGAAATAAAACAATATATATAATAAAAGGAATAAATCTAAAACTTAATGACCTTTAATTATTATTTTAAAAATAAATGGAAAAAAATTTAAATTTGTTCATCATTACTACTATTATTACTATTATTATTAAAAAAGAAAAGAAACTCAAATTTATGATATGGTCATTGATATCATTATTGTATTATTATTTTAAATTAAAATAAAATAAGAAAAACTTTCTAAATTTGTTCATAATTTTTCTATTTAAATATATATATAATCTTCTCCATACTCAATACACAATTTTTCTACCATTCTTTCCTCCTTATCTTTTTTTAAACTTCCAATTTTTTTTTCTCGTTATCTTAATTTTTAGAAAGTTTTTTATTGTAGGGTAAGAATATTGTCGTGAGTATTCAAATTGTAAATGTCACACTCCGAATTTGAGCGCCAAAATACTTGAAGTGTATGTGTATGGTGTACATTTAAAATGGGGTATGGAGCAGGGATACACGGTGTAAAAAGAAAGGTGAATTGTGAACTCATGGACTCTACAAACGCCCCAGGCCGAGGACACTAAGTTCCTAGGCACCCCCTCACCTTGACCAACATACTCATGGATTTGAAAAGGGAAAGTAGAATGGAGCAAATAAGCTACTTGTAGGATCTCATCGCATCCTTGATCTATAGATGACCAAGGTTAATCCTAGGCCTTAGGCTTGTTGACCTTGTGCACAGACTTTGTATCACATTAGGCTTCGCAACGATACCAAGTGCTTGTAGTTGAGATGCTACCTCAAATACACTCTCACAAATCAGGTGGAGACAACCGGGTGAGTCCTAACCTCAAGTACACTCTCCCAAATATCACCCAAATCGAGAAATCGAGAAGCCATTATAAGAAAATCAAATTCCTTAAAAGTGATAGGTGAGAAGAAAAGGCACCCAATGGGCCTTCATTGTTAGGGCAATTCTATGGAAGATTTGTATCTTTGTTTGGTGTTCCTTTGAGAAGAAGGGAAGAAAGGGAATATCTCACCTATATTTGAGTTTTGTACTAAGTTTCCATGTTAGCTTCTTCTTCACATACTAAGTGTTGACATGTCATCTAATTACACAAGTTTACTTCCTATTGGATGACACAACAATTAAGTAATATTTAAGGGTGCATAGGTCCAAACAATCCGAACAAAGGTCATAGTTCAACCCAAACCTTCTGTTTTTGGGTTAGATTAAGTGGTTTTTGTTTAATTATTTTACAAAGTCATGTTTATCCCCTGAGTTACAAATATTCACCAGCCACACTGTATATAGTTAACATTAGTTACAAGCGTGAAATATTCTTAGTTTTCATAATAATCTTAAAAGTAGAGTAGGATTGAGTTGAATTGTAACCTTATTTTTTGGTGGGTTAGATTGTGTCACGTCCTAAGCCCACTGCTAACAAATATTGTTGTCTTTGGACTTTCCCTCTCAAGTTTTCCCTCAACTCTTTTAAAGAATGCTTTGTGCCCATTTCAACCTGATGTGGGATTTCACAATAAATTTGAGAGGAAACATGAAAGAGAAAGCCAAAAGAAACAATATGTACTAGTAGTGGATTGAGATTTTCCAAGTTGACCCATAAGCTGATTTAAATTTTAAGTAATCGGAAAAAGAAAAAAAAAAAATCTAACCCAACCTATATGATTTGAGTTGGGTAGCTCAGGTTAGATGACTTATTGGGTCATATAAACACCCTCGAAAGCTGCTTGTGACCTCAAACAAAAACTTTATTTTTCGTTTGTTTTTGGTAATTAGGAAGTGAATGATCATATTGCAATCCCCTTTTATGGTATATATCCGAATGGCATAGTGTGTTCGAAGCACATGTGATATGGGGTTTAAGTGATCCAAATGGGATGCGTTGTCCCATCGACGAGGGGCCATTGGGGCCTCCTTGCCTTCCCCTTCCCCAACACAGCTACCAAATGCAACCTTCATTTCACACTCCCAACGAACATTAAGGCATTTAGGAGAGGCACAAATAAATATGCCCACTTGCCTCTTTCCTTTATTCATTTGGACCACCACCAAATTATGTATCTCATCCATCCTTCTCACCTACATTTTTACGCATTTAATTCTACCATCTTATCTCTATCCACTTGTTTGTGTAGCAACTCGACTTTTTAAAACCCTAAACTACTCTAGGTTCGTGTCATTTTAAAGCGGAAGAATAAAAACATGTAGGTTGCAAACGCGTACGTTTCGAAAAATAACTAAGTTTTGTACAAGGTACCCGTTTCTAATCAAATCTAAAAGACCATACATCCAAGTTATTTAAAAACATAGAACTCTATATATAAACAATATGACAGTCTCTCAGGGTAACTACCGATCCCTCTCAGCTCTTACACGCACTTGCTCTTACCTAAAAAAAAATTCAACTCCCATGCACACCCATGCACATCGATGAGCTACTGCCACTAGTAAAGATCTCAAGGGAGTGCAATGGTCGGAGATATTCTTTATGAAACTTCCTATTTTTAAATAAAATTGGATGTATTATTTTCTCGTTTGATTTTAAAATGGTAATCCATGTAAAACGTAGTTATTTCTTAAAATGTATTTACGACGTGTACGTTTTCATTCTTTTACTTTAAAGTGGTGTCAACATGCGTATGATAACGAACTCGAGTCGATCTAGGATTATAGAAAATCTAGTTCTTAAGTCAAGTAGGTATTGTATTATAATGTATATATGTTAATCCCACCGAACTTGTGCGTAAGGTATTTTGATTATATTTTTGTATTATCCATCTAATATGTATATCATTATTGTCTACATCTTTTATACATTTGACCAACTCATATAACCCGTATGTGTTGTTAAAGTGTTAGCCAACCCTCTATTTTTTGACTTGAGTTGGATGGAGCATCGATTAAAAAGAAAGATTTAGAGTAGTTAATCTCATTGATTGGTAAAGCGTTTGACTAAGAATGAGAGTGGGAGCAACGTGCGACAGCAAATGGCGAGCAACATGCGAATGAACATGATCAAGAGAGGTGTAGCGTGGTGTGTGATTGCTGCAAGCCAAGTAACTTACGACTACAAATGGGACAAGTACAAAAATCGAATAGAACTAGTTCGGTTCTCAAAAGGGGAAAATATATCAAACCTAAACCAATATTATATGTAAATGAACTCAACCCAACGCGGGGAGATTTAGGAATTTTATTTATAAATTAATAATTTTTATTTATATACTTTTGAAAGATTTATTTATTCCTTTAAGTTTGATTAGATATTTTGTGTTTGCATTAGAAGAAATAGGATAATTAAATTTTTTAAAGATAAAAATTATTTTAAAATTCCGGTTGTCCTACCAAGCGTGTGCAATTTTGAATATAACTATTTATACCAATTTTTTTTTATTAAGTAATTTATAAAAAAAGAAAAAAAAAAGGAAAAAATACAACTATTTAATATTACGAGATTTCGTAATTTATATCCTTTTAATTTCCAGAAATGGATTGCAAACAAATGGATAACCGTCAAAATATAAAATACAAAATATCTGCATATTTCTATTATTTAAATTAATGTACAAAATTACAAATTCATCTTTTTTTTTTTTTTTTTTTTTAAATCAAATTAGTCATAATAAAATTTTGAAGTTTGAAAAATGTTAAAAAGACTAATTTTTGGAGTTGTTTGTAAGAATATTTGAAATATTTACGTACGATATGAAAATAATAATAAATGGATATAAGATATTTATGCAAATATTTAGATATTTATTTATAATAAAATATCAAATAAGAGGTGTGGTCAATTATAATTCAGGACTATAATTTAGAACTAAATATCTGTATTTGTATAGTTTAAAAATATAGTTTTTTTTTAAAAAAAATTAAATAACAAAATTAAGCTAAAATTTTTTTATGGGAATTTTTTTTAAAAAAAATTGTGTTAAATAGGTTGTATTTCAAAATTTTAAAAATTTAAGATCCTATTAAACTCAAAATTGAAAGTGCTTATACCATGATAGACAAAAAATTCAATAATTTTTTAATTTTTTTTAAATATTAAATATGCTAAACATCTAATCAATACTTTTAAAAATAATATATATATATATATATTTATAGTTTAGTATCACATTAAATAAAAAATTTAAAGGATATTTTTTTTGAAGGTTGACATCAAAAAGAAAAAAAAAATGGAAGGATTAAAGTTAGAATTGAATGGAAATTAGAGGAAAGGAAGTAAAAAGAAATTGGAGTTAAAAAGAATGGATAAGAAAGGTAAAAAGGGTCTGTTTTGTGAAGTAAGGGAATTGGATAAGTGAAGTTTATAGGCCCCATAATATCTTTATGCATAAACTGGATTCAAAGAAATAGAAAAAGGAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGGGAAGCTTTTTAATAAAGGGAGAGAAATGAAGGGTTTGGTTAATAATGATTTCACTCACAGAAATGGAGGGTTTTGGTTTGGAGGCATGACAGACAGCTGCTGCACATCAGTCGTTTGGTGATTCGGACCCCTTTAGTTCCTGGACAAAATACCGACGCTAAATTATTGCCTTTCTCAAAAACCCCTCTCCTTTGTGTACCTCCCACCCCTCTTTCTCTCTCCTCACCTCTCTCCATTGTCAAGGACTCCAGCTCTGCACCAAAACCAACCAAGCTCTCTACCACGATCCCCTTCAATTTGGGTATTCTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGGTTTTTGCATCTGGGGTTGCGTTTTTCTCTTGGATCTGTTCTGGGGTTTCACTGATTAAGCTTCAGGTTTTGGTTTCAAGATCTGGGGTTTCTTTTCTCTTTCCTCCTACCCTTTTTTGAAGCGGTTTTAGGTTCTGAGTTGATTCTAGTTTGTTGGCTAGGGTTCGTGATGACTTCTGTACTGTTACTGAGTGTTTGAATCTGTCTGAATCCTTGGTTTCTTGTTTTGTTTGTCTGTTTTCATGTTTTTTCTTCACTTCTTCAATGTCTTGTCTGCGATATCTGCTTTCTGCTTTGTCTCTGACTGAATATTCATCTTGATTTTTGCTTTGCTAAATCCTTGGATGACATGTTCTTAGGACATCCTTCTCTGGATGGAAGACCAAAAGACAGACAGGAGAGCTCTTGATTGTGTGTGCTGAAGCTGCTGATTAA

mRNA sequence

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAGGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGACTCCAGCTCTGCACCAAAACCAACCAAGCTCTCTACCACGATCCCCTTCAATTTGGGACATCCTTCTCTGGATGGAAGACCAAAAGACAGACAGGAGAGCTCTTGATTGTGTGTGCTGAAGCTGCTGATTAA

Coding sequence (CDS)

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAGGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGACTCCAGCTCTGCACCAAAACCAACCAAGCTCTCTACCACGATCCCCTTCAATTTGGGACATCCTTCTCTGGATGGAAGACCAAAAGACAGACAGGAGAGCTCTTGATTGTGTGTGCTGAAGCTGCTGATTAA

Protein sequence

MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGLQLCTKTNQALYHDPLQFGTSFSGWKTKRQTGELLIVCAEAAD
Homology
[Close]
BLAST of CmaCh18G006230 vs. Swiss-Prot
Match: RR12B_POPTR (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa GN=rps12-B PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.9e-18
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 46 SCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          +CT + SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 33 TCTRVYSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 82

[Close]
BLAST of CmaCh18G006230 vs. Swiss-Prot
Match: RR12B_OLIPU (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila GN=rps12-B PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.2e-11
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1 

Query: 55 KGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          +G  +  +STITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 31 RGTCTRVYSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 71

[Close]
BLAST of CmaCh18G006230 vs. Swiss-Prot
Match: RR12_BUXMI (30S ribosomal protein S12, chloroplastic OS=Buxus microphylla GN=rps12-A PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.9e-10
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1 

Query: 64 TITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          TITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGI 70

[Close]
BLAST of CmaCh18G006230 vs. Swiss-Prot
Match: RR12_NICSY (30S ribosomal protein S12, chloroplastic OS=Nicotiana sylvestris GN=rps12-A PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.9e-10
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1 

Query: 64 TITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          TITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGI 70

[Close]
BLAST of CmaCh18G006230 vs. Swiss-Prot
Match: RR12_BARVE (30S ribosomal protein S12, chloroplastic OS=Barbarea verna GN=rps12-A PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.9e-10
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1 

Query: 64 TITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          TITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGI 70

[Close]
BLAST of CmaCh18G006230 vs. TrEMBL
Match: U5CU38_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s02071p00004290 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.8e-31
Identity = 76/94 (80.85%), Postives = 81/94 (86.17%), Query Frame = 1 

Query: 2  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
          +EN TELV VT RDG+EEGRRFS+EEKDP+TSKELNEEPYE         S SKGDLSVN
Sbjct: 8  HENATELVLVTPRDGVEEGRRFSSEEKDPITSKELNEEPYE---------SDSKGDLSVN 67

Query: 62 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          FSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 68 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 92

[Close]
BLAST of CmaCh18G006230 vs. TrEMBL
Match: A0A0A0LR16_CUCSA (30S ribosomal protein S12-B OS=Cucumis sativus GN=Csa_1G044825 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.8e-31
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 1 

Query: 17 MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 76
          MEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSVNFSTITPKKPNSALRK
Sbjct: 1  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRK 60

Query: 77 VARVRLTSGFEITAY 92
          VARVRLTSGFEITAY
Sbjct: 61 VARVRLTSGFEITAY 75

[Close]
BLAST of CmaCh18G006230 vs. TrEMBL
Match: A0A059C1Y4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00717 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-30
Identity = 76/94 (80.85%), Postives = 79/94 (84.04%), Query Frame = 1 

Query: 2  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
          +ENVTELV VTLRDG+EEGRRFSNEEKDPMTSKELNEEP              KGDLSVN
Sbjct: 8  HENVTELVLVTLRDGVEEGRRFSNEEKDPMTSKELNEEP--------------KGDLSVN 67

Query: 62 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          FSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 68 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 87

[Close]
BLAST of CmaCh18G006230 vs. TrEMBL
Match: A0A0D2NAB6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G100800 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.0e-29
Identity = 73/94 (77.66%), Postives = 77/94 (81.91%), Query Frame = 1 

Query: 2  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
          +ENVTE V VTLRD +EEGRRFSNEEKDPMTSKELNEEP              KGDLSVN
Sbjct: 8  HENVTEFVLVTLRDRVEEGRRFSNEEKDPMTSKELNEEP--------------KGDLSVN 67

Query: 62 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          FSTITPKKPNSALRKVA+VRLTSGFEITAYIPG+
Sbjct: 68 FSTITPKKPNSALRKVAKVRLTSGFEITAYIPGI 87

[Close]
BLAST of CmaCh18G006230 vs. TrEMBL
Match: A0A0C5G6K8_IPOBA (Ribosomal protein S12 OS=Ipomoea batatas GN=rps12 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-25
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 1 

Query: 31 MTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 90
          M SKELNEEPYEVKISCTVL SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA
Sbjct: 1  MNSKELNEEPYEVKISCTVLKSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 60

Query: 91 YIPGL 96
          YIPG+
Sbjct: 61 YIPGI 65

[Close]
BLAST of CmaCh18G006230 vs. TAIR10
Match: ATCG00065.1 (ATCG00065.1 ribosomal protein S12A)

HSP 1 Score: 65.1 bits (157), Expect = 3.9e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1 

Query: 64 TITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          TITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGI 70

[Close]
BLAST of CmaCh18G006230 vs. TAIR10
Match: ATCG01230.1 (ATCG01230.1 ribosomal protein S12B)

HSP 1 Score: 65.1 bits (157), Expect = 3.9e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1 

Query: 64 TITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          TITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGI 70

[Close]
BLAST of CmaCh18G006230 vs. TAIR10
Match: ATCG00905.1 (ATCG00905.1 ribosomal protein S12C)

HSP 1 Score: 65.1 bits (157), Expect = 3.9e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1 

Query: 64 TITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          TITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGI 70

[Close]
BLAST of CmaCh18G006230 vs. NCBI nr
Match: gi|1009172427|ref|XP_015867265.1| (PREDICTED: 30S ribosomal protein S12, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 149.1 bits (375), Expect = 5.8e-33
Identity = 74/95 (77.89%), Postives = 84/95 (88.42%), Query Frame = 1 

Query: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60
          MNENVTELV VTL++G+EEG+RFSNEE D MTSKELNEEPYE+KISC VL +G KGDLS+
Sbjct: 1  MNENVTELVLVTLQNGVEEGKRFSNEENDRMTSKELNEEPYEIKISCMVLQNGIKGDLSI 60

Query: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          NFS I PKKPNSAL KVARVRLT GFE+T +IPG+
Sbjct: 61 NFSIIIPKKPNSALSKVARVRLTFGFEMTTFIPGI 95

[Close]
BLAST of CmaCh18G006230 vs. NCBI nr
Match: gi|1009159802|ref|XP_015898012.1| (PREDICTED: 30S ribosomal protein S12, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 146.0 bits (367), Expect = 4.9e-32
Identity = 72/95 (75.79%), Postives = 84/95 (88.42%), Query Frame = 1 

Query: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60
          MNENVT+LV VTL++G+EEG+RFSNEE D MTSKELN+EPYE+KISC VL +G KGDLS+
Sbjct: 1  MNENVTKLVLVTLQNGVEEGKRFSNEENDRMTSKELNKEPYEIKISCMVLQNGIKGDLSI 60

Query: 61 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          NFS I PKKPNSAL KVARVRLT GFE+T +IPG+
Sbjct: 61 NFSIIIPKKPNSALSKVARVRLTFGFEMTTFIPGI 95

[Close]
BLAST of CmaCh18G006230 vs. NCBI nr
Match: gi|548832465|gb|ERM95251.1| (hypothetical protein AMTR_s02071p00004290 [Amborella trichopoda])

HSP 1 Score: 142.5 bits (358), Expect = 5.4e-31
Identity = 76/94 (80.85%), Postives = 81/94 (86.17%), Query Frame = 1 

Query: 2  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
          +EN TELV VT RDG+EEGRRFS+EEKDP+TSKELNEEPYE         S SKGDLSVN
Sbjct: 8  HENATELVLVTPRDGVEEGRRFSSEEKDPITSKELNEEPYE---------SDSKGDLSVN 67

Query: 62 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          FSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 68 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 92

[Close]
BLAST of CmaCh18G006230 vs. NCBI nr
Match: gi|700209137|gb|KGN64233.1| (30S ribosomal protein S12-B [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 5.4e-31
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 1 

Query: 17 MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 76
          MEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSVNFSTITPKKPNSALRK
Sbjct: 1  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRK 60

Query: 77 VARVRLTSGFEITAY 92
          VARVRLTSGFEITAY
Sbjct: 61 VARVRLTSGFEITAY 75

[Close]
BLAST of CmaCh18G006230 vs. NCBI nr
Match: gi|629107118|gb|KCW72264.1| (hypothetical protein EUGRSUZ_E00717 [Eucalyptus grandis])

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-30
Identity = 76/94 (80.85%), Postives = 79/94 (84.04%), Query Frame = 1 

Query: 2  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
          +ENVTELV VTLRDG+EEGRRFSNEEKDPMTSKELNEEP              KGDLSVN
Sbjct: 8  HENVTELVLVTLRDGVEEGRRFSNEEKDPMTSKELNEEP--------------KGDLSVN 67

Query: 62 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGL 96
          FSTITPKKPNSALRKVARVRLTSGFEITAYIPG+
Sbjct: 68 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGI 87

The following BLAST results are available for this feature:
BLAST of CmaCh18G006230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR12B_POPTR6.9e-1890.0030S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa GN=rps12-B PE=... [more]
RR12B_OLIPU8.2e-1180.4930S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila GN=rps12-B ... [more]
RR12_BUXMI6.9e-1096.8830S ribosomal protein S12, chloroplastic OS=Buxus microphylla GN=rps12-A PE=3 SV... [more]
RR12_NICSY6.9e-1096.8830S ribosomal protein S12, chloroplastic OS=Nicotiana sylvestris GN=rps12-A PE=3... [more]
RR12_BARVE6.9e-1096.8830S ribosomal protein S12, chloroplastic OS=Barbarea verna GN=rps12-A PE=3 SV=1[more]
BLAST of CmaCh18G006230 vs. TrEMBL
Match NameE-valueIdentityDescription
U5CU38_AMBTC3.8e-3180.85Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s02071p00004290 PE=4 SV=... [more]
A0A0A0LR16_CUCSA3.8e-3198.6730S ribosomal protein S12-B OS=Cucumis sativus GN=Csa_1G044825 PE=4 SV=1[more]
A0A059C1Y4_EUCGR1.1e-3080.85Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00717 PE=4 SV=1[more]
A0A0D2NAB6_GOSRA6.0e-2977.66Uncharacterized protein OS=Gossypium raimondii GN=B456_005G100800 PE=4 SV=1[more]
A0A0C5G6K8_IPOBA1.4e-2595.38Ribosomal protein S12 OS=Ipomoea batatas GN=rps12 PE=4 SV=1[more]
BLAST of CmaCh18G006230 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00065.13.9e-1196.88ATCG00065.1 ribosomal protein S12A[more]
ATCG01230.13.9e-1196.88ATCG01230.1 ribosomal protein S12B[more]
ATCG00905.13.9e-1196.88ATCG00905.1 ribosomal protein S12C[more]
BLAST of CmaCh18G006230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1009172427|ref|XP_015867265.1|5.8e-3377.89PREDICTED: 30S ribosomal protein S12, chloroplastic-like [Ziziphus jujuba][more]
gi|1009159802|ref|XP_015898012.1|4.9e-3275.79PREDICTED: 30S ribosomal protein S12, chloroplastic-like [Ziziphus jujuba][more]
gi|548832465|gb|ERM95251.1|5.4e-3180.85hypothetical protein AMTR_s02071p00004290 [Amborella trichopoda][more]
gi|700209137|gb|KGN64233.1|5.4e-3198.6730S ribosomal protein S12-B [Cucumis sativus][more]
gi|629107118|gb|KCW72264.1|1.6e-3080.85hypothetical protein EUGRSUZ_E00717 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006032Ribosomal_S12/S23
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G006230.1CmaCh18G006230.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 83..102
score: 1.6E-10coord: 67..82
score: 1.6
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 64..95
score: 2.1
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 57..96
score: 2.7
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 68..75
scor
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 60..96
score: 1.9
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 60..103
score: 1.54
NoneNo IPR availablePANTHERPTHR11652:SF17SUBFAMILY NOT NAMEDcoord: 64..95
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh18G006230Cucurbita maxima (Rimu)cmacmaB211
CmaCh18G006230Cucurbita maxima (Rimu)cmacmaB216
CmaCh18G006230Cucurbita maxima (Rimu)cmacmaB399
CmaCh18G006230Cucumber (Gy14) v1cgycmaB0040
CmaCh18G006230Cucumber (Gy14) v1cgycmaB0514
CmaCh18G006230Cucumber (Gy14) v1cgycmaB0884
CmaCh18G006230Cucurbita moschata (Rifu)cmacmoB398
CmaCh18G006230Cucurbita moschata (Rifu)cmacmoB395
CmaCh18G006230Cucurbita moschata (Rifu)cmacmoB407
CmaCh18G006230Cucurbita moschata (Rifu)cmacmoB419
CmaCh18G006230Cucurbita moschata (Rifu)cmacmoB428
CmaCh18G006230Wild cucumber (PI 183967)cmacpiB428
CmaCh18G006230Wild cucumber (PI 183967)cmacpiB399
CmaCh18G006230Wild cucumber (PI 183967)cmacpiB403
CmaCh18G006230Cucumber (Chinese Long) v2cmacuB395
CmaCh18G006230Cucumber (Chinese Long) v2cmacuB399
CmaCh18G006230Cucumber (Chinese Long) v2cmacuB425
CmaCh18G006230Melon (DHL92) v3.5.1cmameB361
CmaCh18G006230Melon (DHL92) v3.5.1cmameB367
CmaCh18G006230Melon (DHL92) v3.5.1cmameB369
CmaCh18G006230Watermelon (Charleston Gray)cmawcgB341
CmaCh18G006230Watermelon (Charleston Gray)cmawcgB349
CmaCh18G006230Watermelon (97103) v1cmawmB386
CmaCh18G006230Watermelon (97103) v1cmawmB389
CmaCh18G006230Cucurbita pepo (Zucchini)cmacpeB413
CmaCh18G006230Cucurbita pepo (Zucchini)cmacpeB415
CmaCh18G006230Cucurbita pepo (Zucchini)cmacpeB418
CmaCh18G006230Cucurbita pepo (Zucchini)cmacpeB419
CmaCh18G006230Cucurbita pepo (Zucchini)cmacpeB438
CmaCh18G006230Cucurbita pepo (Zucchini)cmacpeB445
CmaCh18G006230Bottle gourd (USVL1VR-Ls)cmalsiB367
CmaCh18G006230Bottle gourd (USVL1VR-Ls)cmalsiB369
CmaCh18G006230Cucumber (Gy14) v2cgybcmaB089
CmaCh18G006230Cucumber (Gy14) v2cgybcmaB095
CmaCh18G006230Cucumber (Gy14) v2cgybcmaB771
CmaCh18G006230Melon (DHL92) v3.6.1cmamedB414
CmaCh18G006230Melon (DHL92) v3.6.1cmamedB421
CmaCh18G006230Melon (DHL92) v3.6.1cmamedB426
CmaCh18G006230Silver-seed gourdcarcmaB0057
CmaCh18G006230Silver-seed gourdcarcmaB0562
CmaCh18G006230Silver-seed gourdcarcmaB0696
CmaCh18G006230Silver-seed gourdcarcmaB0907
CmaCh18G006230Cucumber (Chinese Long) v3cmacucB0468
CmaCh18G006230Cucumber (Chinese Long) v3cmacucB0476
CmaCh18G006230Cucumber (Chinese Long) v3cmacucB0509
CmaCh18G006230Watermelon (97103) v2cmawmbB402
CmaCh18G006230Watermelon (97103) v2cmawmbB394
CmaCh18G006230Wax gourdcmawgoB0515
CmaCh18G006230Wax gourdcmawgoB0529
CmaCh18G006230Wax gourdcmawgoB0535